Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0004116

Physical Location & Seq

Genomic Coordinates Reverse (-)

26776437 .. 26779243

Gene Structure 2807 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0256000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1170 bp

ATGAAGATCCAAAAACAACAATGGGGAGTCGAAGACTACTTTCCTGAAGAAATCGTGGACAAAATCCTGTTGAAGTTGCCCGTCAAAGAGGTTATCAGATGCAGCGCCGTGTGCAAGTTATGGAACTCTCTCATCAAAAACCCTGCCTTCATTCAAACCCACCTCAACAATCAAACCCACGACGGCGTTTCGGAGCTCCTCCTACTCAGCTCCCACCAATCAGACGATCTGCATTGGGATAACCCTGCAGCTTTATTCGGTCAGTATTCCAACCTCCGAAATCCAATTCACAACAACAACAACAACAGTAGCAATTGGACCAAGGGTATCAGTTACCAAGTGGTCGGAACTTGTAACGGGCTCGTATGCCTTTCTCTTTACTCATTTGACCGTGACCCATGCCCTCCTGTAATTCTCTGGAATCCATCCATTAGAAAGTTCGGGTTTTTGCCTAGTCCAAGTCTTGCCACTGATTGCTGCCGGAATGAAAGTTATTATTTCTGCTATGATTCTCGTATTGATGATTATAAGGTTGTGAGAATTGTCGAGAGAATCCATCGCGAGGTTGAGGTCTGGTCCTTAGCCTCAGGAGGTGCTTGGAAGAGTCTTAATAATGTTCCTGCCGATTTTTCCCCGTATAGACACTGTCATGCTTTTGTCAATGGTGCTTTTCACTGGGTTCAAAGCCGCCTCACGAAGGAGGAGGAGGAGGAGGAGTTTTCTGTTTCCGTTGTGGCATTGGATATGGTTGATGAATCATTTCGCAATGTCGAGATTCGCCAAGGTTGGAGTGGTCCACCAATGATTTCAAGGTACCATGGTGATGGGGATCAGTGCTGGCTTGCGTTATTTGAGTTGCAGGGAGACTCTTGTTTTGACTTGTGGGTGATGAAAGAGTACGGTGTGGCCGAATCATGGACTAAATTATTCAATGTGTGTCTGCTAGGATCTCCGGAAGAAGAACCTAGGATCGAGCCATTTGGTTTTACAAAGAGTGGTCAGGTGGTGGTCAGAATGGGTCGGGACGAAGAGTTCAATTCGTTCAAGTCTTATGACCCCAAGGACAAACAGTTTAGAGATTTTGGAAATCAGGCATATGACTACTACTTCATGGATTCTTTCGTGGAGAGCCTTGTCTTACTTGGCCAAACCAATGTTTTTTCTTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PCRF RF-1

Protein Analysis

389

Amino Acids

44.92

Weight (kDa)

5.09

Isoelectric Point (pI)

46.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	14 - 50	1e-09	F-box domain
F-box-like	PF12937	15 - 49	1.5e-07	F-box-like
FBA_3	PF08268	100 - 364	1.1e-18	F-box associated beta propeller domain
FBA_1	PF07734	105 - 379	5.4e-14	F-box associated beta propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004116)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47020 AT2G47020 AT2G47020 AT2G47020 AT2G47020
fragaria_vesca	FvH4_6g25260 FvH4_6g25260 FvH4_6g25260 FvH4_6g25260 FvH4_6g25260 FvH4_6g25260 FvH4_6g25260 FvH4_6g25260 FvH4_6g25260
malus_domestica	MD05G1002600.v1.1
prunus_persica	Prupe.7G036500_v2.0.a1 Prupe.7G036500_v2.0.a1 Prupe.7G036500_v2.0.a1 Prupe.7G036500_v2.0.a1 Prupe.7G036500_v2.0.a1 Prupe.7G036500_v2.0.a1 Prupe.7G036500_v2.0.a1
pyrus_communis	pycom05g00250
rosa_chinensis	RchiOBHm_Chr2g0125161
rosa_laevigata	RLG00000018851
rosa_multiflora	Rmu_sc0003505.1_g000032
rosa_roxburghii	Rroxscaffold_2G00118220 Rroxscaffold_2G00118690
rosa_rugosa	Rorug02G0256000
rosa_samantha	Rh2AG314300 Rh2BG322500 Rh2DG340900
rosa_wichuraiana	Rw2G025430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	528
Acc65I	GGTACC	1 cut(s)	813
AccB1I	GGYRCC	1 cut(s)	813
AccII	CGCG	1 cut(s)	561
AccIII	TCCGGA	1 cut(s)	952
AciI	CCGC	1 cut(s)	688
AclWI	GGATC	3 cut(s)	837, 955, 977
AcoI	YGGCCR	2 cut(s)	906, 1144
AcuI	CTGAAG	1 cut(s)	66
AfaI	GTAC	2 cut(s)	815, 899
AfiI	CCNNNNNNNGG	3 cut(s)	562, 697, 915
AgsI	TTSAA	7 cut(s)	73, 155, 683, 810, 931, 1036, 1045
AloI	GAACNNNNNNTCC	2 cut(s)	1016, 1048
AluBI	AGCT	3 cut(s)	196, 210, 251
AluI	AGCT	3 cut(s)	196, 210, 251
Alw21I	GWGCWC	1 cut(s)	198
Alw26I	GTCTC	1 cut(s)	858
AlwI	GGATC	3 cut(s)	837, 955, 977
Aor13HI	TCCGGA	1 cut(s)	952
AoxI	GGCC	2 cut(s)	906, 1144
ApeKI	GCWGC	3 cut(s)	102, 248, 477
ArsI	GACNNNNNNTTYG	2 cut(s)	857, 889
Asp700I	GAANNNNTTC	1 cut(s)	759
Asp718I	GGTACC	1 cut(s)	813
AspA2I	CCTAGG	1 cut(s)	965
AspLEI	GCGC	1 cut(s)	107
AspS9I	GGNCC	3 cut(s)	318, 576, 794
AsuHPI	GGTGA	2 cut(s)	833, 898
AvaII	GGWCC	3 cut(s)	318, 576, 794
AvrII	CCTAGG	1 cut(s)	965
AxyI	CCTNAGG	1 cut(s)	586
BaeI	ACNNNNGTAYC	2 cut(s)	805, 838
BalI	TGGCCA	1 cut(s)	1146
BanI	GGYRCC	1 cut(s)	813
BanII	GRGCYC	2 cut(s)	198, 363
BbsI	GAAGAC	1 cut(s)	39
Bbv12I	GWGCWC	1 cut(s)	198
BbvI	GCAGC	3 cut(s)	114, 260, 464
BccI	CCATC	3 cut(s)	433, 564, 818
BceAI	ACGGC	2 cut(s)	92, 199
BcoDI	GTCTC	1 cut(s)	858
BfaI	CTAG	3 cut(s)	453, 944, 966
BfmI	CTRYAG	1 cut(s)	246
BfoI	RGCGCY	1 cut(s)	108
BisI	GCNGC	4 cut(s)	103, 249, 478, 688
BlnI	CCTAGG	1 cut(s)	965
BlsI	GCNGC	4 cut(s)	104, 250, 479, 689
Bme18I	GGWCC	3 cut(s)	318, 576, 794
BmgT120I	GGNCC	3 cut(s)	318, 576, 794
BmiI	GGNNCC	1 cut(s)	815
BmrI	ACTGGG	1 cut(s)	685
BmsI	GCATC	1 cut(s)	89
BmuI	ACTGGG	1 cut(s)	685
BpiI	GAAGAC	1 cut(s)	39
Bpu10I	CCTNAGC	1 cut(s)	580
BsaBI	GATNNNNATC	1 cut(s)	828
BsaJI	CCNNGG	5 cut(s)	321, 781, 817, 965, 1059
BsaWI	WCCGGW	1 cut(s)	952
BsaXI	ACNNNNNCTCC	2 cut(s)	701, 731
Bsc4I	CCNNNNNNNGG	3 cut(s)	562, 697, 915
Bse1I	ACTGG	1 cut(s)	680
Bse21I	CCTNAGG	1 cut(s)	586
Bse3DI	GCAATG	1 cut(s)	772
Bse8I	GATNNNNATC	1 cut(s)	828
BseAI	TCCGGA	1 cut(s)	952
BseDI	CCNNGG	5 cut(s)	321, 781, 817, 965, 1059
BseGI	GGATG	1 cut(s)	425
BseJI	GATNNNNATC	1 cut(s)	828
BseLI	CCNNNNNNNGG	3 cut(s)	562, 697, 915
BseMI	GCAATG	1 cut(s)	772
BseMII	CTCAG	2 cut(s)	220, 600
BseNI	ACTGG	1 cut(s)	680
BseRI	GAGGAG	6 cut(s)	188, 716, 719, 722, 725, 728
BseXI	GCAGC	3 cut(s)	114, 260, 464
Bsh1236I	CGCG	1 cut(s)	561
BshFI	GGCC	2 cut(s)	908, 1146
BshNI	GGYRCC	1 cut(s)	813
BsiHKAI	GWGCWC	1 cut(s)	198
BsiSI	CCGG	2 cut(s)	481, 953
BslFI	GGGAC	1 cut(s)	1037
BslI	CCNNNNNNNGG	3 cut(s)	562, 697, 915
BsmAI	GTCTC	1 cut(s)	858
BsmFI	GGGAC	1 cut(s)	1037
BsnI	GGCC	2 cut(s)	908, 1146
Bsp1286I	GDGCHC	2 cut(s)	198, 363
Bsp13I	TCCGGA	1 cut(s)	952
Bsp143I	GATC	5 cut(s)	6, 226, 829, 947, 969
Bsp19I	CCATGG	1 cut(s)	817
Bsp68I	TCGCGA	1 cut(s)	561
BspACI	CCGC	1 cut(s)	688
BspANI	GGCC	2 cut(s)	908, 1146
BspCNI	CTCAG	2 cut(s)	219, 599
BspEI	TCCGGA	1 cut(s)	952
BspFNI	CGCG	1 cut(s)	561
BspLI	GGNNCC	1 cut(s)	815
BspMAI	CTGCAG	1 cut(s)	250
BspPI	GGATC	3 cut(s)	837, 955, 977
BspT107I	GGYRCC	1 cut(s)	813
BsrDI	GCAATG	1 cut(s)	772
BsrI	ACTGG	1 cut(s)	680
BssECI	CCNNGG	5 cut(s)	321, 781, 817, 965, 1059
BssMI	GATC	5 cut(s)	6, 226, 829, 947, 969
BssT1I	CCWWGG	5 cut(s)	321, 781, 817, 965, 1059
Bst4CI	ACNGT	5 cut(s)	308, 392, 647, 902, 1071
Bst6I	CTCTTC	2 cut(s)	596, 1023
BstC8I	GCNNGC	2 cut(s)	839, 843
BstDEI	CTNAG	3 cut(s)	206, 580, 586
BstDSI	CCRYGG	1 cut(s)	817
BstENI	CCTNNNNNAGG	1 cut(s)	695
BstF5I	GGATG	1 cut(s)	425
BstFNI	CGCG	1 cut(s)	561
BstH2I	RGCGCY	1 cut(s)	108
BstHHI	GCGC	1 cut(s)	107
BstKTI	GATC	5 cut(s)	9, 229, 832, 950, 972
BstMAI	GTCTC	1 cut(s)	858
BstMBI	GATC	5 cut(s)	6, 226, 829, 947, 969
BstMWI	GCNNNNNNNGC	1 cut(s)	111
BstSFI	CTRYAG	1 cut(s)	246
BstUI	CGCG	1 cut(s)	561
BstV1I	GCAGC	3 cut(s)	114, 260, 464
BstV2I	GAAGAC	1 cut(s)	39
BstX2I	RGATCY	2 cut(s)	6, 947
BstXI	CCANNNNNNTGG	1 cut(s)	824
BstYI	RGATCY	2 cut(s)	6, 947
Bsu36I	CCTNAGG	1 cut(s)	586
BsuRI	GGCC	2 cut(s)	908, 1146
BtgI	CCRYGG	1 cut(s)	817
BtgZI	GCGATG	1 cut(s)	542
BtsCI	GGATG	1 cut(s)	425
BtsIMutI	CAGTG	4 cut(s)	468, 643, 673, 839
BtuMI	TCGCGA	1 cut(s)	561
Cac8I	GCNNGC	2 cut(s)	839, 843
CfoI	GCGC	1 cut(s)	107
Cfr13I	GGNCC	3 cut(s)	318, 576, 794
Csp6I	GTAC	2 cut(s)	814, 898
CviAII	CATG	5 cut(s)	399, 650, 818, 915, 1111
CviQI	GTAC	2 cut(s)	814, 898
DdeI	CTNAG	3 cut(s)	206, 580, 586
DpnI	GATC	5 cut(s)	8, 228, 831, 949, 971
DpnII	GATC	5 cut(s)	6, 226, 829, 947, 969
EaeI	YGGCCR	2 cut(s)	906, 1144
Eam1104I	CTCTTC	2 cut(s)	596, 1023
EarI	CTCTTC	2 cut(s)	596, 1023
Ecl136II	GAGCTC	1 cut(s)	196
Eco130I	CCWWGG	5 cut(s)	321, 781, 817, 965, 1059
Eco24I	GRGCYC	2 cut(s)	198, 363
Eco47I	GGWCC	3 cut(s)	318, 576, 794
Eco53kI	GAGCTC	1 cut(s)	196
Eco57I	CTGAAG	1 cut(s)	66
Eco81I	CCTNAGG	1 cut(s)	586
EcoICRI	GAGCTC	1 cut(s)	196
EcoNI	CCTNNNNNAGG	1 cut(s)	695
EcoT14I	CCWWGG	5 cut(s)	321, 781, 817, 965, 1059
EcoT38I	GRGCYC	2 cut(s)	198, 363
ErhI	CCWWGG	5 cut(s)	321, 781, 817, 965, 1059
FaeI	CATG	5 cut(s)	402, 653, 821, 918, 1114
FaqI	GGGAC	1 cut(s)	1037
FatI	CATG	5 cut(s)	398, 649, 817, 914, 1110
FauNDI	CATATG	1 cut(s)	1096
Fnu4HI	GCNGC	4 cut(s)	103, 249, 478, 688
FokI	GGATG	1 cut(s)	412
FriOI	GRGCYC	2 cut(s)	198, 363
Fsp4HI	GCNGC	4 cut(s)	103, 249, 478, 688
FspBI	CTAG	3 cut(s)	453, 944, 966
GlaI	GCGC	1 cut(s)	106
GluI	GCNGC	4 cut(s)	103, 249, 478, 688
HaeII	RGCGCY	1 cut(s)	108
HaeIII	GGCC	2 cut(s)	908, 1146
HapII	CCGG	2 cut(s)	481, 953
HhaI	GCGC	1 cut(s)	107
Hin1II	CATG	5 cut(s)	402, 653, 821, 918, 1114
Hin6I	GCGC	1 cut(s)	105
HinP1I	GCGC	1 cut(s)	105
HpaII	CCGG	2 cut(s)	481, 953
HphI	GGTGA	2 cut(s)	833, 898
Hpy166II	GTNNAC	2 cut(s)	58, 797
Hpy188I	TCNGA	6 cut(s)	98, 193, 223, 278, 347, 1013
Hpy188III	TCNNGA	9 cut(s)	44, 418, 547, 560, 588, 694, 772, 953, 1022
Hpy8I	GTNNAC	2 cut(s)	58, 797
Hpy99I	CGWCG	1 cut(s)	185
HpyAV	CCTTC	2 cut(s)	157, 691
HpyCH4III	ACNGT	5 cut(s)	308, 392, 647, 902, 1071
HpyCH4V	TGCA	5 cut(s)	102, 114, 232, 248, 859
HpyF10VI	GCNNNNNNNGC	1 cut(s)	111
HpyF3I	CTNAG	3 cut(s)	206, 580, 586
Hsp92II	CATG	5 cut(s)	402, 653, 821, 918, 1114
HspAI	GCGC	1 cut(s)	105
Kpn2I	TCCGGA	1 cut(s)	952
KpnI	GGTACC	1 cut(s)	817
Kzo9I	GATC	5 cut(s)	6, 226, 829, 947, 969
LmnI	GCTCC	3 cut(s)	193, 201, 215
Lsp1109I	GCAGC	3 cut(s)	114, 260, 464
LweI	GCATC	1 cut(s)	89
MaeI	CTAG	3 cut(s)	453, 944, 966
MaeIII	GTNAC	3 cut(s)	332, 353, 392
MalI	GATC	5 cut(s)	8, 228, 831, 949, 971
MboI	GATC	5 cut(s)	6, 226, 829, 947, 969
MboII	GAAGA	7 cut(s)	16, 44, 59, 613, 968, 971, 1040
MfeI	CAATTG	1 cut(s)	313
MflI	RGATCY	2 cut(s)	6, 947
MhlI	GDGCHC	2 cut(s)	198, 363
MlsI	TGGCCA	1 cut(s)	1146
MluCI	AATT	6 cut(s)	285, 313, 411, 540, 923, 1036
MluNI	TGGCCA	1 cut(s)	1146
MlyI	GAGTC	3 cut(s)	36, 613, 860
MmeI	TCCRAC	3 cut(s)	294, 325, 767
Mox20I	TGGCCA	1 cut(s)	1146
MroI	TCCGGA	1 cut(s)	952
MroXI	GAANNNNTTC	1 cut(s)	759
MscI	TGGCCA	1 cut(s)	1146
MseI	TTAA	1 cut(s)	609
MslI	CAYNNNNRTG	2 cut(s)	648, 822
Msp20I	TGGCCA	1 cut(s)	1146
MspI	CCGG	2 cut(s)	481, 953
MunI	CAATTG	1 cut(s)	313
MvnI	CGCG	1 cut(s)	561
MwoI	GCNNNNNNNGC	1 cut(s)	111
NcoI	CCATGG	1 cut(s)	817
NdeI	CATATG	1 cut(s)	1096
NdeII	GATC	5 cut(s)	6, 226, 829, 947, 969
NlaIII	CATG	5 cut(s)	402, 653, 821, 918, 1114
NlaIV	GGNNCC	1 cut(s)	815
NmuCI	GTSAC	1 cut(s)	392
NruI	TCGCGA	1 cut(s)	561
PcsI	WCGNNNNNNNCGW	1 cut(s)	906
PdmI	GAANNNNTTC	1 cut(s)	759
PfeI	GAWTC	7 cut(s)	421, 509, 552, 755, 775, 911, 1115
PflFI	GACNNNGTC	1 cut(s)	645
PkrI	GCNGC	4 cut(s)	104, 250, 479, 689
PleI	GAGTC	3 cut(s)	35, 612, 860
PpsI	GAGTC	3 cut(s)	35, 612, 860
PsiI	TTATAA	1 cut(s)	528
Psp124BI	GAGCTC	1 cut(s)	198
PspN4I	GGNNCC	1 cut(s)	815
PspPI	GGNCC	3 cut(s)	318, 576, 794
PstI	CTGCAG	1 cut(s)	250
PsuI	RGATCY	2 cut(s)	6, 947
PsyI	GACNNNGTC	1 cut(s)	645
RruI	TCGCGA	1 cut(s)	561
RsaI	GTAC	2 cut(s)	815, 899
RsaNI	GTAC	2 cut(s)	814, 898
RseI	CAYNNNNRTG	2 cut(s)	648, 822
SacI	GAGCTC	1 cut(s)	198
SaqAI	TTAA	1 cut(s)	609
SatI	GCNGC	4 cut(s)	103, 249, 478, 688
Sau3AI	GATC	5 cut(s)	6, 226, 829, 947, 969
Sau96I	GGNCC	3 cut(s)	318, 576, 794
SchI	GAGTC	3 cut(s)	36, 613, 860
SduI	GDGCHC	2 cut(s)	198, 363
SfaNI	GCATC	1 cut(s)	89
SfcI	CTRYAG	1 cut(s)	246
SinI	GGWCC	3 cut(s)	318, 576, 794
SmiMI	CAYNNNNRTG	2 cut(s)	648, 822
Sse9I	AATT	6 cut(s)	285, 313, 411, 540, 923, 1036
SsiI	CCGC	1 cut(s)	688
SspMI	CTAG	3 cut(s)	453, 944, 966
SstI	GAGCTC	1 cut(s)	198
StyI	CCWWGG	5 cut(s)	321, 781, 817, 965, 1059
TaaI	ACNGT	5 cut(s)	308, 392, 647, 902, 1071
TaqI	TCGA	4 cut(s)	30, 546, 771, 972
TaqII	GACCGA	1 cut(s)	248
TasI	AATT	6 cut(s)	285, 313, 411, 540, 923, 1036
TauI	GCSGC	1 cut(s)	690
TfiI	GAWTC	7 cut(s)	421, 509, 552, 755, 775, 911, 1115
Tru1I	TTAA	1 cut(s)	609
Tru9I	TTAA	1 cut(s)	609
TscAI	CASTG	4 cut(s)	475, 650, 680, 839
TseFI	GTSAC	1 cut(s)	392
TseI	GCWGC	3 cut(s)	102, 248, 477
Tsp45I	GTSAC	1 cut(s)	392
TspDTI	ATGAA	6 cut(s)	17, 139, 501, 768, 905, 1099
TspGWI	ACGGA	1 cut(s)	718
TspRI	CASTG	4 cut(s)	475, 650, 680, 839
Tth111I	GACNNNGTC	1 cut(s)	645
VpaK11BI	GGWCC	3 cut(s)	318, 576, 794
XagI	CCTNNNNNAGG	1 cut(s)	695
XcmI	CCANNNNNNNNNTGG	1 cut(s)	788
XmaJI	CCTAGG	1 cut(s)	965
XmnI	GAANNNNTTC	1 cut(s)	759
XspI	CTAG	3 cut(s)	453, 944, 966

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.