Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0004116

Physical Location & Seq

Genomic Coordinates Reverse (-)

38881313 .. 38885932

Gene Structure 4620 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG322500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1221 bp

ATGACAAGTCAGCTGCGGCGTAGTTTGCTGCAGGCGATGAAACAAATTAAGCAACTGCCACCAGCCTTTCCTTACCCTCTTCCATTTCTTCGTTCTTACTCAACAGAATTGCAACCTCAGTTATCACCAAAGCTTGTTAAGATCATGGAGCAAAGGCTGTCGCTTATCGAACAAAGGAATGCTTGTCTCCACAGTATCATAAACCAGTCGGATGCCACAGCAGAAGAGTATGCAAGGGCGAATAAGGAGCTTCGCAAAATTAGCTCATCCATGGACCTTATAAATCATTTAAGAGCCATACACAAGGAGATTGATGGGTTGAGGTCACTCATGGCTGAATCTGCTCAAGATAAAGACATGCTTGATATGGTGACCACTGAGTTGGATCAGGCCATCAACGAAGAGAAAAGACTGCACAATTTGTTGCTCAAGACTCTACTCCCCAAGGATGATGCCGATGAGAGGGATTGCATATTGGAGGTTAGAGCAGGAACTGGTGGGGAGGAGGCTTCTTTGTTTGCAATGGACATATTTAAAATGTATGAGAGATTCTCTCACAATAAAGGCTGGATGTTTGAAGTCTTGGATATTACCGAGTCTGATCTTAAAGGATATAAGGAAGCAAGTGCGGCAATCTCAGGGGCTGATGTTTATGGGAATCTTAAATTTGAGAGTGGTATTCACAGAGTACAGCGAGTTCCCGTGACAGAGAAGTCTGGACGCATTCATACTAGTGCTGTTTCTGTTGCTATCCTCCCCCAAGCTGATCAGGTAGATGTCCACCTGAGGAACGAAGATTTGAAAATTGATACCTATAGATCTGGTGGTTCTGGGGGTCAGCATGCAAATACTACAAACAGTGCGGTTAGAATAACTCATATTCCAACTGGGATGACCATAGCCATACAAGATGAACGATCCCAACATATGAACAAGGCCAAGGCACTTAAAGTACTGTGTGCAAAGCTATATGAGATGGAAAGGTCTAGACTACAGAACAATCGGTCAAAACTTCGATTAGAGCAGATTGGCAGTGGGGATCGATCAGAACGCATTCGTACATACAACTTTCCTCAAGGTCGTGTAACTGATCATCGTGTTGGCATTACTCATCATGCAATAAGTGATGTGATGCAGGGAGAGAATCTGGATGTGTTTGTTGATGCGCTTCTTTTGCAGCAGGAAATGGATGCAATCGCATCTTTCAGTTCTTCCCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PCRF RF-1

Protein Analysis

406

Amino Acids

45.81

Weight (kDa)

6.55

Isoelectric Point (pI)

54.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PCRF	PF03462	60 - 249	4.4e-58	PCRF domain
RF-1	PF00472	257 - 366	1.8e-39	RF-1 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004116)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47020 AT2G47020 AT2G47020 AT2G47020 AT2G47020
fragaria_vesca	FvH4_6g25260 FvH4_6g25260 FvH4_6g25260 FvH4_6g25260 FvH4_6g25260 FvH4_6g25260 FvH4_6g25260 FvH4_6g25260 FvH4_6g25260
malus_domestica	MD05G1002600.v1.1
prunus_persica	Prupe.7G036500_v2.0.a1 Prupe.7G036500_v2.0.a1 Prupe.7G036500_v2.0.a1 Prupe.7G036500_v2.0.a1 Prupe.7G036500_v2.0.a1 Prupe.7G036500_v2.0.a1 Prupe.7G036500_v2.0.a1
pyrus_communis	pycom05g00250
rosa_chinensis	RchiOBHm_Chr2g0125161
rosa_laevigata	RLG00000018851
rosa_multiflora	Rmu_sc0003505.1_g000032
rosa_roxburghii	Rroxscaffold_2G00118220 Rroxscaffold_2G00118690
rosa_rugosa	Rorug02G0256000
rosa_samantha	Rh2AG314300 Rh2BG322500 Rh2DG340900
rosa_wichuraiana	Rw2G025430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	281
AasI	GACNNNNNNGTC	1 cut(s)	712
AciI	CCGC	3 cut(s)	16, 629, 863
AclWI	GGATC	3 cut(s)	393, 912, 1047
AcsI	RAATTY	1 cut(s)	665
AfaI	GTAC	3 cut(s)	690, 954, 1060
AfiI	CCNNNNNNNGG	1 cut(s)	462
AgsI	TTSAA	2 cut(s)	578, 802
AhlI	ACTAGT	1 cut(s)	731
AluBI	AGCT	6 cut(s)	13, 133, 250, 264, 764, 967
AluI	AGCT	6 cut(s)	13, 133, 250, 264, 764, 967
Alw26I	GTCTC	1 cut(s)	191
AlwI	GGATC	3 cut(s)	393, 912, 1047
AlwNI	CAGNNNCTG	2 cut(s)	494, 644
AoxI	GGCC	2 cut(s)	390, 936
ApeKI	GCWGC	3 cut(s)	13, 28, 1177
ApoI	RAATTY	1 cut(s)	665
Asp700I	GAANNNNTTC	1 cut(s)	1053
AspLEI	GCGC	1 cut(s)	1168
AspS9I	GGNCC	1 cut(s)	274
AsuHPI	GGTGA	2 cut(s)	117, 382
AvaII	GGWCC	1 cut(s)	274
AxyI	CCTNAGG	1 cut(s)	785
BbvI	GCAGC	2 cut(s)	15, 1189
BccI	CCATC	3 cut(s)	308, 401, 970
BclI	TGATCA	2 cut(s)	766, 1090
BcoDI	GTCTC	1 cut(s)	191
BcuI	ACTAGT	1 cut(s)	731
BfaI	CTAG	2 cut(s)	732, 987
BfmI	CTRYAG	3 cut(s)	29, 814, 992
BglII	AGATCT	1 cut(s)	818
BisI	GCNGC	5 cut(s)	14, 17, 29, 630, 1178
BlsI	GCNGC	5 cut(s)	15, 18, 30, 631, 1179
BmcAI	AGTACT	1 cut(s)	954
Bme18I	GGWCC	1 cut(s)	274
BmgT120I	GGNCC	1 cut(s)	274
BmrI	ACTGGG	1 cut(s)	897
BmsI	GCATC	6 cut(s)	202, 442, 1122, 1153, 1180, 1208
BmuI	ACTGGG	1 cut(s)	897
BplI	GAGNNNNNCTC	4 cut(s)	536, 568, 538, 570
BpuEI	CTTGAG	3 cut(s)	330, 413, 1059
Bsa29I	ATCGAT	1 cut(s)	1042
BsaJI	CCNNGG	3 cut(s)	270, 444, 939
Bsc4I	CCNNNNNNNGG	1 cut(s)	462
Bse1I	ACTGG	3 cut(s)	205, 499, 892
Bse21I	CCTNAGG	1 cut(s)	785
Bse3DI	GCAATG	1 cut(s)	528
BseCI	ATCGAT	1 cut(s)	1042
BseDI	CCNNGG	3 cut(s)	270, 444, 939
BseGI	GGATG	7 cut(s)	217, 266, 454, 576, 897, 1156, 1195
BseLI	CCNNNNNNNGG	1 cut(s)	462
BseMI	GCAATG	1 cut(s)	528
BseMII	CTCAG	4 cut(s)	131, 369, 651, 776
BseNI	ACTGG	3 cut(s)	205, 499, 892
BseRI	GAGGAG	1 cut(s)	518
BseXI	GCAGC	2 cut(s)	15, 1189
BsgI	GTGCAG	1 cut(s)	398
BshFI	GGCC	2 cut(s)	392, 938
BshVI	ATCGAT	1 cut(s)	1042
BslI	CCNNNNNNNGG	1 cut(s)	462
BsmAI	GTCTC	1 cut(s)	191
BsmI	GAATGC	3 cut(s)	184, 723, 1053
BsnI	GGCC	2 cut(s)	392, 938
Bsp143I	GATC	9 cut(s)	141, 385, 601, 766, 818, 917, 1039, 1043, 1090
Bsp19I	CCATGG	1 cut(s)	270
BspACI	CCGC	3 cut(s)	16, 629, 863
BspANI	GGCC	2 cut(s)	392, 938
BspCNI	CTCAG	4 cut(s)	130, 370, 650, 777
BspDI	ATCGAT	1 cut(s)	1042
BspMAI	CTGCAG	1 cut(s)	33
BspPI	GGATC	3 cut(s)	393, 912, 1047
BsrDI	GCAATG	1 cut(s)	528
BsrI	ACTGG	3 cut(s)	205, 499, 892
BssECI	CCNNGG	3 cut(s)	270, 444, 939
BssMI	GATC	9 cut(s)	141, 385, 601, 766, 818, 917, 1039, 1043, 1090
BssT1I	CCWWGG	3 cut(s)	270, 444, 939
Bst4CI	ACNGT	3 cut(s)	194, 860, 957
Bst6I	CTCTTC	3 cut(s)	84, 219, 396
BstC8I	GCNNGC	2 cut(s)	33, 843
BstDEI	CTNAG	4 cut(s)	117, 378, 637, 785
BstDSI	CCRYGG	1 cut(s)	270
BstEII	GGTNACC	1 cut(s)	370
BstF5I	GGATG	7 cut(s)	217, 266, 454, 576, 897, 1156, 1195
BstHHI	GCGC	1 cut(s)	1168
BstKTI	GATC	9 cut(s)	144, 388, 604, 769, 821, 920, 1042, 1046, 1093
BstMAI	GTCTC	1 cut(s)	191
BstMBI	GATC	9 cut(s)	141, 385, 601, 766, 818, 917, 1039, 1043, 1090
BstMWI	GCNNNNNNNGC	5 cut(s)	25, 261, 341, 629, 1174
BstNSI	RCATGY	2 cut(s)	361, 845
BstPI	GGTNACC	1 cut(s)	370
BstSFI	CTRYAG	3 cut(s)	29, 814, 992
BstV1I	GCAGC	2 cut(s)	15, 1189
BstX2I	RGATCY	1 cut(s)	818
BstXI	CCANNNNNNTGG	1 cut(s)	382
BstYI	RGATCY	1 cut(s)	818
Bsu15I	ATCGAT	1 cut(s)	1042
Bsu36I	CCTNAGG	1 cut(s)	785
BsuRI	GGCC	2 cut(s)	392, 938
BsuTUI	ATCGAT	1 cut(s)	1042
BtgI	CCRYGG	1 cut(s)	270
BtgZI	GCGATG	1 cut(s)	50
BtsCI	GGATG	7 cut(s)	217, 266, 454, 576, 897, 1156, 1195
BtsI	GCAGTG	1 cut(s)	1039
BtsIMutI	CAGTG	3 cut(s)	375, 865, 1039
Cac8I	GCNNGC	2 cut(s)	33, 843
CaiI	CAGNNNCTG	2 cut(s)	494, 644
CfoI	GCGC	1 cut(s)	1168
Cfr13I	GGNCC	1 cut(s)	274
ClaI	ATCGAT	1 cut(s)	1042
CseI	GACGC	1 cut(s)	729
Csp6I	GTAC	3 cut(s)	689, 953, 1059
CviAII	CATG	6 cut(s)	145, 271, 331, 358, 842, 1115
CviQI	GTAC	3 cut(s)	689, 953, 1059
DdeI	CTNAG	4 cut(s)	117, 378, 637, 785
DpnI	GATC	9 cut(s)	143, 387, 603, 768, 820, 919, 1041, 1045, 1092
DpnII	GATC	9 cut(s)	141, 385, 601, 766, 818, 917, 1039, 1043, 1090
DraI	TTTAAA	1 cut(s)	535
DrdI	GACNNNNNNGTC	1 cut(s)	712
DseDI	GACNNNNNNGTC	1 cut(s)	712
Eam1104I	CTCTTC	3 cut(s)	84, 219, 396
EarI	CTCTTC	3 cut(s)	84, 219, 396
Eco130I	CCWWGG	3 cut(s)	270, 444, 939
Eco47I	GGWCC	1 cut(s)	274
Eco81I	CCTNAGG	1 cut(s)	785
Eco91I	GGTNACC	1 cut(s)	370
EcoO65I	GGTNACC	1 cut(s)	370
EcoT14I	CCWWGG	3 cut(s)	270, 444, 939
ErhI	CCWWGG	3 cut(s)	270, 444, 939
FaeI	CATG	6 cut(s)	148, 274, 334, 361, 845, 1118
FalI	AAGNNNNNCTT	4 cut(s)	166, 198, 345, 377
FatI	CATG	6 cut(s)	144, 270, 330, 357, 841, 1114
FauNDI	CATATG	1 cut(s)	927
FbaI	TGATCA	2 cut(s)	766, 1090
Fnu4HI	GCNGC	5 cut(s)	14, 17, 29, 630, 1178
FokI	GGATG	7 cut(s)	224, 253, 461, 583, 904, 1163, 1202
Fsp4HI	GCNGC	5 cut(s)	14, 17, 29, 630, 1178
FspBI	CTAG	2 cut(s)	732, 987
GlaI	GCGC	1 cut(s)	1167
GluI	GCNGC	5 cut(s)	14, 17, 29, 630, 1178
HaeIII	GGCC	2 cut(s)	392, 938
HgaI	GACGC	1 cut(s)	729
HhaI	GCGC	1 cut(s)	1168
Hin1II	CATG	6 cut(s)	148, 274, 334, 361, 845, 1118
Hin6I	GCGC	1 cut(s)	1166
HinP1I	GCGC	1 cut(s)	1166
HindIII	AAGCTT	1 cut(s)	131
HinfI	GANTC	6 cut(s)	338, 433, 549, 596, 658, 1144
HphI	GGTGA	2 cut(s)	117, 382
Hpy166II	GTNNAC	1 cut(s)	781
Hpy188I	TCNGA	3 cut(s)	211, 601, 1048
Hpy188III	TCNNGA	5 cut(s)	347, 430, 717, 987, 1148
Hpy8I	GTNNAC	1 cut(s)	781
HpyCH4III	ACNGT	3 cut(s)	194, 860, 957
HpyF10VI	GCNNNNNNNGC	5 cut(s)	25, 261, 341, 629, 1174
HpyF3I	CTNAG	4 cut(s)	117, 378, 637, 785
Hsp92II	CATG	6 cut(s)	148, 274, 334, 361, 845, 1118
HspAI	GCGC	1 cut(s)	1166
Ksp22I	TGATCA	2 cut(s)	766, 1090
Kzo9I	GATC	9 cut(s)	141, 385, 601, 766, 818, 917, 1039, 1043, 1090
LmnI	GCTCC	2 cut(s)	148, 247
Lsp1109I	GCAGC	2 cut(s)	15, 1189
LweI	GCATC	6 cut(s)	202, 442, 1122, 1153, 1180, 1208
MaeI	CTAG	2 cut(s)	732, 987
MaeIII	GTNAC	4 cut(s)	324, 370, 703, 1084
MalI	GATC	9 cut(s)	143, 387, 603, 768, 820, 919, 1041, 1045, 1092
MboI	GATC	9 cut(s)	141, 385, 601, 766, 818, 917, 1039, 1043, 1090
MboII	GAAGA	6 cut(s)	71, 80, 236, 413, 806, 1203
MflI	RGATCY	1 cut(s)	818
MluCI	AATT	6 cut(s)	45, 107, 258, 418, 665, 804
MlyI	GAGTC	2 cut(s)	427, 605
MmeI	TCCRAC	3 cut(s)	189, 363, 908
MroXI	GAANNNNTTC	1 cut(s)	1053
MseI	TTAA	7 cut(s)	48, 138, 290, 534, 606, 663, 948
MslI	CAYNNNNRTG	1 cut(s)	732
MspA1I	CMGCKG	1 cut(s)	13
Mva1269I	GAATGC	3 cut(s)	184, 723, 1053
MwoI	GCNNNNNNNGC	5 cut(s)	25, 261, 341, 629, 1174
NcoI	CCATGG	1 cut(s)	270
NdeI	CATATG	1 cut(s)	927
NdeII	GATC	9 cut(s)	141, 385, 601, 766, 818, 917, 1039, 1043, 1090
NlaIII	CATG	6 cut(s)	148, 274, 334, 361, 845, 1118
NmuCI	GTSAC	3 cut(s)	324, 370, 703
NspI	RCATGY	2 cut(s)	361, 845
PaeI	GCATGC	1 cut(s)	845
PctI	GAATGC	3 cut(s)	184, 723, 1053
PdmI	GAANNNNTTC	1 cut(s)	1053
PfeI	GAWTC	4 cut(s)	338, 549, 658, 1144
PkrI	GCNGC	5 cut(s)	15, 18, 30, 631, 1179
PleI	GAGTC	2 cut(s)	427, 604
PpsI	GAGTC	2 cut(s)	427, 604
PsiI	TTATAA	1 cut(s)	281
PspEI	GGTNACC	1 cut(s)	370
PspPI	GGNCC	1 cut(s)	274
PsrI	GAACNNNNNNTAC	2 cut(s)	681, 713
PstI	CTGCAG	1 cut(s)	33
PstNI	CAGNNNCTG	2 cut(s)	494, 644
PsuI	RGATCY	1 cut(s)	818
PvuII	CAGCTG	1 cut(s)	13
RsaI	GTAC	3 cut(s)	690, 954, 1060
RsaNI	GTAC	3 cut(s)	689, 953, 1059
RseI	CAYNNNNRTG	1 cut(s)	732
SaqAI	TTAA	7 cut(s)	48, 138, 290, 534, 606, 663, 948
SatI	GCNGC	5 cut(s)	14, 17, 29, 630, 1178
Sau3AI	GATC	9 cut(s)	141, 385, 601, 766, 818, 917, 1039, 1043, 1090
Sau96I	GGNCC	1 cut(s)	274
ScaI	AGTACT	1 cut(s)	954
SchI	GAGTC	2 cut(s)	427, 605
SfaNI	GCATC	6 cut(s)	202, 442, 1122, 1153, 1180, 1208
SfcI	CTRYAG	3 cut(s)	29, 814, 992
SinI	GGWCC	1 cut(s)	274
SmiMI	CAYNNNNRTG	1 cut(s)	732
SmlI	CTYRAG	3 cut(s)	345, 428, 1074
SmoI	CTYRAG	3 cut(s)	345, 428, 1074
SpeI	ACTAGT	1 cut(s)	731
SphI	GCATGC	1 cut(s)	845
Sse9I	AATT	6 cut(s)	45, 107, 258, 418, 665, 804
SsiI	CCGC	3 cut(s)	16, 629, 863
SspMI	CTAG	2 cut(s)	732, 987
StyI	CCWWGG	3 cut(s)	270, 444, 939
TaaI	ACNGT	3 cut(s)	194, 860, 957
TaqI	TCGA	3 cut(s)	168, 1015, 1042
TaqII	GACCGA	1 cut(s)	993
TasI	AATT	6 cut(s)	45, 107, 258, 418, 665, 804
TatI	WGTACW	2 cut(s)	688, 952
TauI	GCSGC	2 cut(s)	19, 632
TfiI	GAWTC	4 cut(s)	338, 549, 658, 1144
Tru1I	TTAA	7 cut(s)	48, 138, 290, 534, 606, 663, 948
Tru9I	TTAA	7 cut(s)	48, 138, 290, 534, 606, 663, 948
TscAI	CASTG	3 cut(s)	382, 865, 1039
TseFI	GTSAC	3 cut(s)	324, 370, 703
TseI	GCWGC	3 cut(s)	13, 28, 1177
Tsp45I	GTSAC	3 cut(s)	324, 370, 703
TspDTI	ATGAA	4 cut(s)	53, 716, 927, 944
TspRI	CASTG	3 cut(s)	382, 865, 1039
VpaK11BI	GGWCC	1 cut(s)	274
XapI	RAATTY	1 cut(s)	665
XbaI	TCTAGA	1 cut(s)	986
XceI	RCATGY	2 cut(s)	361, 845
XmnI	GAANNNNTTC	1 cut(s)	1053
XspI	CTAG	2 cut(s)	732, 987
ZrmI	AGTACT	1 cut(s)	954

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.