Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003505.1

Orthogroup ID

OG0004116

Physical Location & Seq

Genomic Coordinates Reverse (-)

160965 .. 165610

Gene Structure 4646 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003505.1_g000032.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1221 bp

atgacaagtcagctgcggcgcagtttgctgcaggcgatgaaacaaattaagcaactgccaccagcctttccttaccctcttccatttcttcgttcttactcaacagaattgcaacctcagttatcaccaaagcttgttaagatcatggagcaaaggctatcgcttatcgaacaaaggaatgcttgtctccacagtatcataaaccagtcggatgccacagcagaagagtatgcaagggcgaataaggagcttcgcaaaattagctcatccatggaccttataaatcagtcaagagccatacacaaggagattgatgggttgaggtcactcatggctgaatctgctcaagataaagacatgcttgatatggtgaccactgacttggatcaggccatcaacgaagagaaaagactgcacaatttgttgctcaagactctactccccaaggatgatgccgatgagagggattgcatattggaggttagagcaggaactggtggggaggaggcttctttgtttgcaatggacatatttaaaatgtatgagagattctctcacaataaaggctggatgtttgaagtcttggatattaccgagtctgatcttaaaggatataaggaagcaagtgcggcaatctcaggggctgatgtttatgggaatcttaaatttgagagtggtattcacagagtacagcgagttcccgtgacagagaagtctggacgcattcatactagtgctgtttctgttgctatcctcccccaagctgatcaggtagatgtccacctgaggaacgaagatttgaaaattgatacctatagatctggtggttctgggggtcagcatgcaaatactacaaacagtgcggttagaataactcatattccaactgggatgaccatagccatacaagatgaacgatcccaacatatgaacaaggccaaggcacttaaagtactgtgtgcaaagctatatgagatggaaaggtctagactacagaacaatcggtcaaaacttcgattagagcagattggcagtggggatcgatcagaacgcattcgtacatacaactttcctcaaggtcgtgtaactgatcatcgtgttggcattactcatcatgcaataagtgatgtgatgcagggagagaatctggatgtgtttgttgatgcgcttcttttgcagcaggaaatggatgcaatcgcatctttcagttcttcccaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PCRF RF-1

Protein Analysis

406

Amino Acids

45.76

Weight (kDa)

6.52

Isoelectric Point (pI)

54.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004116)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47020 AT2G47020 AT2G47020 AT2G47020 AT2G47020
fragaria_vesca	FvH4_6g25260 FvH4_6g25260 FvH4_6g25260 FvH4_6g25260 FvH4_6g25260 FvH4_6g25260 FvH4_6g25260 FvH4_6g25260 FvH4_6g25260
malus_domestica	MD05G1002600.v1.1
prunus_persica	Prupe.7G036500_v2.0.a1 Prupe.7G036500_v2.0.a1 Prupe.7G036500_v2.0.a1 Prupe.7G036500_v2.0.a1 Prupe.7G036500_v2.0.a1 Prupe.7G036500_v2.0.a1 Prupe.7G036500_v2.0.a1
pyrus_communis	pycom05g00250
rosa_chinensis	RchiOBHm_Chr2g0125161
rosa_laevigata	RLG00000018851
rosa_multiflora	Rmu_sc0003505.1_g000032
rosa_roxburghii	Rroxscaffold_2G00118220 Rroxscaffold_2G00118690
rosa_rugosa	Rorug02G0256000
rosa_samantha	Rh2AG314300 Rh2BG322500 Rh2DG340900
rosa_wichuraiana	Rw2G025430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	281
AasI	GACNNNNNNGTC	1 cut(s)	712
AciI	CCGC	3 cut(s)	16, 629, 863
AclWI	GGATC	3 cut(s)	393, 912, 1047
AcsI	RAATTY	1 cut(s)	665
AfaI	GTAC	3 cut(s)	690, 954, 1060
AfiI	CCNNNNNNNGG	1 cut(s)	462
AgsI	TTSAA	2 cut(s)	578, 802
AhlI	ACTAGT	1 cut(s)	731
AluBI	AGCT	6 cut(s)	13, 133, 250, 264, 764, 967
AluI	AGCT	6 cut(s)	13, 133, 250, 264, 764, 967
Alw26I	GTCTC	1 cut(s)	191
AlwI	GGATC	3 cut(s)	393, 912, 1047
AlwNI	CAGNNNCTG	2 cut(s)	494, 644
AoxI	GGCC	2 cut(s)	390, 936
ApeKI	GCWGC	3 cut(s)	13, 28, 1177
ApoI	RAATTY	1 cut(s)	665
Asp700I	GAANNNNTTC	1 cut(s)	1053
AspLEI	GCGC	2 cut(s)	21, 1168
AspS9I	GGNCC	1 cut(s)	274
AsuHPI	GGTGA	2 cut(s)	117, 382
AvaII	GGWCC	1 cut(s)	274
AxyI	CCTNAGG	1 cut(s)	785
BbvI	GCAGC	2 cut(s)	15, 1189
BccI	CCATC	3 cut(s)	308, 401, 970
BclI	TGATCA	2 cut(s)	766, 1090
BcoDI	GTCTC	1 cut(s)	191
BcuI	ACTAGT	1 cut(s)	731
BfaI	CTAG	2 cut(s)	732, 987
BfmI	CTRYAG	3 cut(s)	29, 814, 992
BglII	AGATCT	1 cut(s)	818
BisI	GCNGC	5 cut(s)	14, 17, 29, 630, 1178
BlsI	GCNGC	5 cut(s)	15, 18, 30, 631, 1179
BmcAI	AGTACT	1 cut(s)	954
Bme18I	GGWCC	1 cut(s)	274
BmgT120I	GGNCC	1 cut(s)	274
BmrI	ACTGGG	1 cut(s)	897
BmsI	GCATC	6 cut(s)	202, 442, 1122, 1153, 1180, 1208
BmuI	ACTGGG	1 cut(s)	897
BplI	GAGNNNNNCTC	4 cut(s)	536, 568, 538, 570
BpuEI	CTTGAG	3 cut(s)	330, 413, 1059
Bsa29I	ATCGAT	1 cut(s)	1042
BsaJI	CCNNGG	3 cut(s)	270, 444, 939
Bsc4I	CCNNNNNNNGG	1 cut(s)	462
Bse1I	ACTGG	3 cut(s)	205, 499, 892
Bse21I	CCTNAGG	1 cut(s)	785
Bse3DI	GCAATG	1 cut(s)	528
BseCI	ATCGAT	1 cut(s)	1042
BseDI	CCNNGG	3 cut(s)	270, 444, 939
BseGI	GGATG	7 cut(s)	217, 266, 454, 576, 897, 1156, 1195
BseLI	CCNNNNNNNGG	1 cut(s)	462
BseMI	GCAATG	1 cut(s)	528
BseMII	CTCAG	3 cut(s)	131, 651, 776
BseNI	ACTGG	3 cut(s)	205, 499, 892
BseRI	GAGGAG	1 cut(s)	518
BseXI	GCAGC	2 cut(s)	15, 1189
BsgI	GTGCAG	1 cut(s)	398
BshFI	GGCC	2 cut(s)	392, 938
BshVI	ATCGAT	1 cut(s)	1042
BslI	CCNNNNNNNGG	1 cut(s)	462
BsmAI	GTCTC	1 cut(s)	191
BsmI	GAATGC	3 cut(s)	184, 723, 1053
BsnI	GGCC	2 cut(s)	392, 938
Bsp143I	GATC	9 cut(s)	141, 385, 601, 766, 818, 917, 1039, 1043, 1090
Bsp19I	CCATGG	1 cut(s)	270
BspACI	CCGC	3 cut(s)	16, 629, 863
BspANI	GGCC	2 cut(s)	392, 938
BspCNI	CTCAG	3 cut(s)	130, 650, 777
BspDI	ATCGAT	1 cut(s)	1042
BspMAI	CTGCAG	1 cut(s)	33
BspPI	GGATC	3 cut(s)	393, 912, 1047
BsrDI	GCAATG	1 cut(s)	528
BsrI	ACTGG	3 cut(s)	205, 499, 892
BssECI	CCNNGG	3 cut(s)	270, 444, 939
BssMI	GATC	9 cut(s)	141, 385, 601, 766, 818, 917, 1039, 1043, 1090
BssT1I	CCWWGG	3 cut(s)	270, 444, 939
Bst4CI	ACNGT	3 cut(s)	194, 860, 957
Bst6I	CTCTTC	3 cut(s)	84, 219, 396
BstC8I	GCNNGC	2 cut(s)	33, 843
BstDEI	CTNAG	3 cut(s)	117, 637, 785
BstDSI	CCRYGG	1 cut(s)	270
BstEII	GGTNACC	1 cut(s)	370
BstF5I	GGATG	7 cut(s)	217, 266, 454, 576, 897, 1156, 1195
BstHHI	GCGC	2 cut(s)	21, 1168
BstKTI	GATC	9 cut(s)	144, 388, 604, 769, 821, 920, 1042, 1046, 1093
BstMAI	GTCTC	1 cut(s)	191
BstMBI	GATC	9 cut(s)	141, 385, 601, 766, 818, 917, 1039, 1043, 1090
BstMWI	GCNNNNNNNGC	5 cut(s)	25, 261, 341, 629, 1174
BstNSI	RCATGY	2 cut(s)	361, 845
BstPI	GGTNACC	1 cut(s)	370
BstSFI	CTRYAG	3 cut(s)	29, 814, 992
BstV1I	GCAGC	2 cut(s)	15, 1189
BstX2I	RGATCY	1 cut(s)	818
BstXI	CCANNNNNNTGG	1 cut(s)	382
BstYI	RGATCY	1 cut(s)	818
Bsu15I	ATCGAT	1 cut(s)	1042
Bsu36I	CCTNAGG	1 cut(s)	785
BsuRI	GGCC	2 cut(s)	392, 938
BsuTUI	ATCGAT	1 cut(s)	1042
BtgI	CCRYGG	1 cut(s)	270
BtgZI	GCGATG	1 cut(s)	50
BtsCI	GGATG	7 cut(s)	217, 266, 454, 576, 897, 1156, 1195
BtsI	GCAGTG	1 cut(s)	1039
BtsIMutI	CAGTG	3 cut(s)	375, 865, 1039
Cac8I	GCNNGC	2 cut(s)	33, 843
CaiI	CAGNNNCTG	2 cut(s)	494, 644
CfoI	GCGC	2 cut(s)	21, 1168
Cfr13I	GGNCC	1 cut(s)	274
ClaI	ATCGAT	1 cut(s)	1042
CseI	GACGC	1 cut(s)	729
Csp6I	GTAC	3 cut(s)	689, 953, 1059
CviAII	CATG	6 cut(s)	145, 271, 331, 358, 842, 1115
CviQI	GTAC	3 cut(s)	689, 953, 1059
DdeI	CTNAG	3 cut(s)	117, 637, 785
DpnI	GATC	9 cut(s)	143, 387, 603, 768, 820, 919, 1041, 1045, 1092
DpnII	GATC	9 cut(s)	141, 385, 601, 766, 818, 917, 1039, 1043, 1090
DraI	TTTAAA	1 cut(s)	535
DrdI	GACNNNNNNGTC	1 cut(s)	712
DseDI	GACNNNNNNGTC	1 cut(s)	712
Eam1104I	CTCTTC	3 cut(s)	84, 219, 396
EarI	CTCTTC	3 cut(s)	84, 219, 396
Eco130I	CCWWGG	3 cut(s)	270, 444, 939
Eco47I	GGWCC	1 cut(s)	274
Eco81I	CCTNAGG	1 cut(s)	785
Eco91I	GGTNACC	1 cut(s)	370
EcoO65I	GGTNACC	1 cut(s)	370
EcoT14I	CCWWGG	3 cut(s)	270, 444, 939
ErhI	CCWWGG	3 cut(s)	270, 444, 939
FaeI	CATG	6 cut(s)	148, 274, 334, 361, 845, 1118
FalI	AAGNNNNNCTT	4 cut(s)	166, 198, 345, 377
FatI	CATG	6 cut(s)	144, 270, 330, 357, 841, 1114
FauNDI	CATATG	1 cut(s)	927
FbaI	TGATCA	2 cut(s)	766, 1090
Fnu4HI	GCNGC	5 cut(s)	14, 17, 29, 630, 1178
FokI	GGATG	7 cut(s)	224, 253, 461, 583, 904, 1163, 1202
Fsp4HI	GCNGC	5 cut(s)	14, 17, 29, 630, 1178
FspBI	CTAG	2 cut(s)	732, 987
GlaI	GCGC	2 cut(s)	20, 1167
GluI	GCNGC	5 cut(s)	14, 17, 29, 630, 1178
HaeIII	GGCC	2 cut(s)	392, 938
HgaI	GACGC	1 cut(s)	729
HhaI	GCGC	2 cut(s)	21, 1168
Hin1II	CATG	6 cut(s)	148, 274, 334, 361, 845, 1118
Hin6I	GCGC	2 cut(s)	19, 1166
HinP1I	GCGC	2 cut(s)	19, 1166
HindIII	AAGCTT	1 cut(s)	131
HinfI	GANTC	6 cut(s)	338, 433, 549, 596, 658, 1144
HphI	GGTGA	2 cut(s)	117, 382
Hpy166II	GTNNAC	1 cut(s)	781
Hpy188I	TCNGA	3 cut(s)	211, 601, 1048
Hpy188III	TCNNGA	6 cut(s)	291, 347, 430, 717, 987, 1148
Hpy8I	GTNNAC	1 cut(s)	781
HpyCH4III	ACNGT	3 cut(s)	194, 860, 957
HpyF10VI	GCNNNNNNNGC	5 cut(s)	25, 261, 341, 629, 1174
HpyF3I	CTNAG	3 cut(s)	117, 637, 785
Hsp92II	CATG	6 cut(s)	148, 274, 334, 361, 845, 1118
HspAI	GCGC	2 cut(s)	19, 1166
Ksp22I	TGATCA	2 cut(s)	766, 1090
Kzo9I	GATC	9 cut(s)	141, 385, 601, 766, 818, 917, 1039, 1043, 1090
LmnI	GCTCC	2 cut(s)	148, 247
Lsp1109I	GCAGC	2 cut(s)	15, 1189
LweI	GCATC	6 cut(s)	202, 442, 1122, 1153, 1180, 1208
MaeI	CTAG	2 cut(s)	732, 987
MaeIII	GTNAC	4 cut(s)	324, 370, 703, 1084
MalI	GATC	9 cut(s)	143, 387, 603, 768, 820, 919, 1041, 1045, 1092
MboI	GATC	9 cut(s)	141, 385, 601, 766, 818, 917, 1039, 1043, 1090
MboII	GAAGA	6 cut(s)	71, 80, 236, 413, 806, 1203
MflI	RGATCY	1 cut(s)	818
MluCI	AATT	6 cut(s)	45, 107, 258, 418, 665, 804
MlyI	GAGTC	2 cut(s)	427, 605
MmeI	TCCRAC	2 cut(s)	189, 908
MroXI	GAANNNNTTC	1 cut(s)	1053
MseI	TTAA	6 cut(s)	48, 138, 534, 606, 663, 948
MslI	CAYNNNNRTG	1 cut(s)	732
MspA1I	CMGCKG	1 cut(s)	13
Mva1269I	GAATGC	3 cut(s)	184, 723, 1053
MwoI	GCNNNNNNNGC	5 cut(s)	25, 261, 341, 629, 1174
NcoI	CCATGG	1 cut(s)	270
NdeI	CATATG	1 cut(s)	927
NdeII	GATC	9 cut(s)	141, 385, 601, 766, 818, 917, 1039, 1043, 1090
NlaIII	CATG	6 cut(s)	148, 274, 334, 361, 845, 1118
NmuCI	GTSAC	3 cut(s)	324, 370, 703
NspI	RCATGY	2 cut(s)	361, 845
PaeI	GCATGC	1 cut(s)	845
PctI	GAATGC	3 cut(s)	184, 723, 1053
PdmI	GAANNNNTTC	1 cut(s)	1053
PfeI	GAWTC	4 cut(s)	338, 549, 658, 1144
PkrI	GCNGC	5 cut(s)	15, 18, 30, 631, 1179
PleI	GAGTC	2 cut(s)	427, 604
PpsI	GAGTC	2 cut(s)	427, 604
PsiI	TTATAA	1 cut(s)	281
PspEI	GGTNACC	1 cut(s)	370
PspPI	GGNCC	1 cut(s)	274
PsrI	GAACNNNNNNTAC	2 cut(s)	681, 713
PstI	CTGCAG	1 cut(s)	33
PstNI	CAGNNNCTG	2 cut(s)	494, 644
PsuI	RGATCY	1 cut(s)	818
PvuII	CAGCTG	1 cut(s)	13
RsaI	GTAC	3 cut(s)	690, 954, 1060
RsaNI	GTAC	3 cut(s)	689, 953, 1059
RseI	CAYNNNNRTG	1 cut(s)	732
SaqAI	TTAA	6 cut(s)	48, 138, 534, 606, 663, 948
SatI	GCNGC	5 cut(s)	14, 17, 29, 630, 1178
Sau3AI	GATC	9 cut(s)	141, 385, 601, 766, 818, 917, 1039, 1043, 1090
Sau96I	GGNCC	1 cut(s)	274
ScaI	AGTACT	1 cut(s)	954
SchI	GAGTC	2 cut(s)	427, 605
SfaNI	GCATC	6 cut(s)	202, 442, 1122, 1153, 1180, 1208
SfcI	CTRYAG	3 cut(s)	29, 814, 992
SinI	GGWCC	1 cut(s)	274
SmiMI	CAYNNNNRTG	1 cut(s)	732
SmlI	CTYRAG	3 cut(s)	345, 428, 1074
SmoI	CTYRAG	3 cut(s)	345, 428, 1074
SpeI	ACTAGT	1 cut(s)	731
SphI	GCATGC	1 cut(s)	845
Sse9I	AATT	6 cut(s)	45, 107, 258, 418, 665, 804
SsiI	CCGC	3 cut(s)	16, 629, 863
SspMI	CTAG	2 cut(s)	732, 987
StyI	CCWWGG	3 cut(s)	270, 444, 939
TaaI	ACNGT	3 cut(s)	194, 860, 957
TaqI	TCGA	3 cut(s)	168, 1015, 1042
TaqII	GACCGA	1 cut(s)	993
TasI	AATT	6 cut(s)	45, 107, 258, 418, 665, 804
TatI	WGTACW	2 cut(s)	688, 952
TauI	GCSGC	2 cut(s)	19, 632
TfiI	GAWTC	4 cut(s)	338, 549, 658, 1144
Tru1I	TTAA	6 cut(s)	48, 138, 534, 606, 663, 948
Tru9I	TTAA	6 cut(s)	48, 138, 534, 606, 663, 948
TscAI	CASTG	3 cut(s)	382, 865, 1039
TseFI	GTSAC	3 cut(s)	324, 370, 703
TseI	GCWGC	3 cut(s)	13, 28, 1177
Tsp45I	GTSAC	3 cut(s)	324, 370, 703
TspDTI	ATGAA	4 cut(s)	53, 716, 927, 944
TspRI	CASTG	3 cut(s)	382, 865, 1039
VpaK11BI	GGWCC	1 cut(s)	274
XapI	RAATTY	1 cut(s)	665
XbaI	TCTAGA	1 cut(s)	986
XceI	RCATGY	2 cut(s)	361, 845
XmnI	GAANNNNTTC	1 cut(s)	1053
XspI	CTAG	2 cut(s)	732, 987
ZrmI	AGTACT	1 cut(s)	954

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.