Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0012171

Physical Location & Seq

Genomic Coordinates Forward (+)

18439385 .. 18443200

Gene Structure 3816 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G194100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1764 bp

ATGGTGGCCGCCAAGAGAAAAAACACAGAAACAGAGGAAGGTGAAATCTTCTCGTCTTGCTCTTTCTCCAGCCTCGGCCTTCACTCAAACTTATGCGAGCAGCTCGAAGAAAGGTTGGGCTTCAAAGCTCCAACTCTGGTGCAAGCTCAAGCCATCCCTGTAATTCTATCCGGCCGCCATGTGCTTGTGAATGCGGCTACGGGCACAGGCAAAACGGTGGCGTATTTGGCTCCGGTTATCCACCACTTGCACTTGTACCAACCTCGAATTCAGCGCTCCGATGGCACTTTCGCGTTGGTTCTTGTGCCAACGCGAGAGCTGTGTTTGCAGGTTCATGAAATCCTGCACAAGTTACTGCACAGGTTTCATTGGATTGTCCCTGGTTATGTAATGGGAGGTGAAAACAGGAACAAGGAGAAGGCCAGGCTGCGCAAAGGCATAACTATTCTAGTTGCTACTCCTGGACGACTCTTGGATCACCTGAAGAATACATCATCGTTCTTGCACACAAATTTGCGTTGGATTATCTTTGATGAAGCAGATAGAATTTTGGAATTGGGATTTGGAAAAGAAATAGAGGAAATACTAGATCGTTTGGGTTCAATGCAACATGGCTCTGCCAATGAGGATGGTGTTGTTTCAACTAAATATGAGTTTCAGAGGCAGAATTTGCTATTGTCAGCGACCTTAAATGAAAAAGTCAATCATCTTGCGAAAATGAGTTTAGAAAAACCTGTTATGATTGGCATGCCTGAGAAAAAGACGCAGTCAATTGCATTACATGAGCATTTAGGATCTGACACAGATGATGAACCACAACCTTCAGCAAAGACAACAGGCTCTTTTAGTGAAGATTATAAACTTCCAGCTCAATTGACCCAGAGATATGTAAAAGTGCCATGTAATGCACGGCTTGCTGTACTTCTTTCCATTCTAAAACATCTTTTTGAGCGAGAAACTTCCGAAAAGATTGTGCTATTCTTTTCAACATGTGATGCAGTGGATTTTCACTACTCCTTGATAAGTGAGTTCCAATTCAGACCTCACTCAGGACTAGAAGCAGAACTTAATCAGCTGTTTGTTAGATGTAAGACCTTTCGGTTACATGGGAATATGAAGCAGGAGGATCGAAGAACTGCGTTTGAAACCTTCAAAAAAGAAAAATCGGCTCTTCTATTGTCCACAGATGTTTGTGCTAGAGGTTTGGATTTCCCGAAAGTAAAATGTATCATACAATATGATTCTCCAGGCGAGGCTACTGAATATGTTCATAGGGTTGGAAGAACTGCTCGGCTTGGCGAAAGAGGAGATTCATTGTTATTTTTACAGCCAATTGAAATGGATTATTTGAAAGAGTTGGCGAAACATGGTGTTTCCCTACAAGAGTATCCCCTCCTCAAAGTATTAGATAGTTTTCCACTATTTGGTCATAAGCATGTCAGGAAGTTTCTTTCCATTGACTCACATCCTTGGGTGATGTCTTTGCAAAAGGCACTTGAAGCATTTACAGAGAAGCCAGATACAAAGACACTGGCCAAAAACGCATTTTGCTCTTGGGTTCGTGCATACACTGCCCATCGTGGTGAGCTGAAAAGAATATTTATGGTGAAGAAACTTCACTTGGGACATGTTGCAAAAAGCTTTGCCTTGAAAGAACAACCTTCCTTGGTTGGTAAATCATTCCAGAATCAAGTAAAGAAGAGGAAGAGGGATGAAAAGCAAAAGGGATTATCAAGAAAGAGGAAGGTTTCCAGGAAAACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010501 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD DUF4217 Helicase_C

Protein Analysis

588

Amino Acids

66.83

Weight (kDa)

9.46

Isoelectric Point (pI)

38.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012171)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40700
fragaria_vesca	FvH4_1g09140 FvH4_1g09140 FvH4_1g09140
malus_domestica	MD02G1096800.v1.1
prunus_persica	Prupe.7G194100_v2.0.a1
pyrus_communis	pycom02g07680 pycom15g19610
rosa_chinensis	RchiOBHm_Chr2g0095531
rosa_laevigata	RLG00000016576
rosa_multiflora	Rmu_co8308315.1_g000001 Rmu_co8333539.1_g000001
rosa_roxburghii	Rroxscaffold_2G00146220
rosa_rugosa	Rorug02G0052200
rosa_samantha	Rh2AG100000 Rh2BG101400 Rh2CG103600 Rh2DG100900
rosa_wichuraiana	Rw2G007590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	858
Acc16I	TGCGCA	1 cut(s)	431
Acc36I	ACCTGC	1 cut(s)	319
AccB7I	CCANNNNNTGG	1 cut(s)	1424
AccII	CGCG	2 cut(s)	293, 313
AciI	CCGC	3 cut(s)	9, 175, 194
AclWI	GGATC	3 cut(s)	483, 802, 1134
AcoI	YGGCCR	3 cut(s)	6, 172, 1533
AcsI	RAATTY	4 cut(s)	267, 511, 546, 667
AcuI	CTGAAG	2 cut(s)	503, 807
AfaI	GTAC	2 cut(s)	257, 921
AfeI	AGCGCT	1 cut(s)	275
AfiI	CCNNNNNNNGG	2 cut(s)	1049, 1424
AflIII	ACRYGT	2 cut(s)	989, 1627
AjnI	CCWGG	5 cut(s)	379, 422, 460, 1246, 1751
AjuI	GAANNNNNNNTTGG	6 cut(s)	252, 284, 546, 578, 1604, 1636
AluBI	AGCT	8 cut(s)	103, 128, 146, 319, 869, 1075, 1588, 1641
AluI	AGCT	8 cut(s)	103, 128, 146, 319, 869, 1075, 1588, 1641
AlwI	GGATC	3 cut(s)	483, 802, 1134
Aor51HI	AGCGCT	1 cut(s)	275
AoxI	GGCC	5 cut(s)	6, 76, 172, 420, 1533
ApeKI	GCWGC	2 cut(s)	100, 427
ApoI	RAATTY	4 cut(s)	267, 511, 546, 667
Asp700I	GAANNNNTTC	1 cut(s)	1266
AspLEI	GCGC	2 cut(s)	276, 432
AsuHPI	GGTGA	6 cut(s)	53, 410, 470, 1486, 1595, 1618
BaeGI	GKGCMC	1 cut(s)	206
BaeI	ACNNNNGTAYC	2 cut(s)	1370, 1403
BalI	TGGCCA	1 cut(s)	1535
BbvI	GCAGC	2 cut(s)	112, 414
BccI	CCATC	4 cut(s)	161, 275, 623, 1584
BceAI	ACGGC	1 cut(s)	926
BcgI	CGANNNNNNTGC	2 cut(s)	1109, 1143
BciT130I	CCWGG	5 cut(s)	381, 424, 462, 1248, 1753
BciVI	GTATCC	1 cut(s)	1398
BfaI	CTAG	4 cut(s)	449, 587, 1055, 1197
BfoI	RGCGCY	1 cut(s)	277
BfuAI	ACCTGC	1 cut(s)	319
BfuI	GTATCC	1 cut(s)	1398
BisI	GCNGC	5 cut(s)	9, 101, 175, 195, 428
BlsI	GCNGC	5 cut(s)	10, 102, 176, 196, 429
Bme1390I	CCNGG	5 cut(s)	381, 424, 462, 1248, 1753
BmiI	GGNNCC	1 cut(s)	231
BmrFI	CCNGG	5 cut(s)	381, 424, 462, 1248, 1753
BmsI	GCATC	1 cut(s)	985
BpmI	CTGGAG	2 cut(s)	52, 1230
BpuEI	CTTGAG	1 cut(s)	132
BsaJI	CCNNGG	4 cut(s)	73, 379, 1469, 1665
BsaWI	WCCGGW	1 cut(s)	232
Bsc4I	CCNNNNNNNGG	2 cut(s)	1049, 1424
Bse1I	ACTGG	1 cut(s)	1536
BseBI	CCWGG	5 cut(s)	381, 424, 462, 1248, 1753
BseDI	CCNNGG	4 cut(s)	73, 379, 1469, 1665
BseGI	GGATG	4 cut(s)	153, 634, 1465, 1717
BseLI	CCNNNNNNNGG	2 cut(s)	1049, 1424
BseMII	CTCAG	2 cut(s)	744, 1062
BseNI	ACTGG	1 cut(s)	1536
BseRI	GAGGAG	2 cut(s)	1320, 1385
BseSI	GKGCMC	1 cut(s)	206
BseX3I	CGGCCG	1 cut(s)	172
BseXI	GCAGC	2 cut(s)	112, 414
BsgI	GTGCAG	2 cut(s)	329, 341
Bsh1236I	CGCG	2 cut(s)	293, 313
Bsh1285I	CGRYCG	1 cut(s)	175
BshFI	GGCC	5 cut(s)	8, 78, 174, 422, 1535
BsiEI	CGRYCG	1 cut(s)	175
BsiSI	CCGG	2 cut(s)	171, 233
BslFI	GGGAC	2 cut(s)	362, 1638
BslI	CCNNNNNNNGG	2 cut(s)	1049, 1424
BsmFI	GGGAC	2 cut(s)	362, 1638
BsmI	GAATGC	1 cut(s)	196
BsnI	GGCC	5 cut(s)	8, 78, 174, 422, 1535
Bsp1286I	GDGCHC	1 cut(s)	206
Bsp143I	GATC	4 cut(s)	475, 589, 794, 1126
BspACI	CCGC	3 cut(s)	9, 175, 194
BspANI	GGCC	5 cut(s)	8, 78, 174, 422, 1535
BspCNI	CTCAG	2 cut(s)	745, 1061
BspFNI	CGCG	2 cut(s)	293, 313
BspHI	TCATGA	1 cut(s)	334
BspLI	GGNNCC	1 cut(s)	231
BspMI	ACCTGC	1 cut(s)	319
BspPI	GGATC	3 cut(s)	483, 802, 1134
BspQI	GCTCTTC	1 cut(s)	1176
BsrI	ACTGG	1 cut(s)	1536
BssECI	CCNNGG	4 cut(s)	73, 379, 1469, 1665
BssMI	GATC	4 cut(s)	475, 589, 794, 1126
BssT1I	CCWWGG	2 cut(s)	1469, 1665
Bst2UI	CCWGG	5 cut(s)	381, 424, 462, 1248, 1753
Bst4CI	ACNGT	1 cut(s)	217
Bst6I	CTCTTC	3 cut(s)	1176, 1694, 1700
BstAPI	GCANNNNNTGC	3 cut(s)	670, 914, 1571
BstC8I	GCNNGC	4 cut(s)	98, 144, 749, 915
BstDEI	CTNAG	2 cut(s)	753, 1048
BstENI	CCTNNNNNAGG	1 cut(s)	1047
BstF5I	GGATG	4 cut(s)	153, 634, 1465, 1717
BstFNI	CGCG	2 cut(s)	293, 313
BstH2I	RGCGCY	1 cut(s)	277
BstHHI	GCGC	2 cut(s)	276, 432
BstKTI	GATC	4 cut(s)	478, 592, 797, 1129
BstMBI	GATC	4 cut(s)	475, 589, 794, 1126
BstMCI	CGRYCG	1 cut(s)	175
BstMWI	GCNNNNNNNGC	8 cut(s)	227, 282, 325, 670, 914, 1499, 1541, 1571
BstNI	CCWGG	5 cut(s)	381, 424, 462, 1248, 1753
BstNSI	RCATGY	4 cut(s)	751, 993, 1439, 1631
BstSCI	CCNGG	5 cut(s)	379, 422, 460, 1246, 1751
BstSLI	GKGCMC	1 cut(s)	206
BstUI	CGCG	2 cut(s)	293, 313
BstV1I	GCAGC	2 cut(s)	112, 414
BstX2I	RGATCY	1 cut(s)	794
BstYI	RGATCY	1 cut(s)	794
BstZI	CGGCCG	1 cut(s)	172
BsuI	GTATCC	1 cut(s)	1398
BsuRI	GGCC	5 cut(s)	8, 78, 174, 422, 1535
BtsCI	GGATG	4 cut(s)	153, 634, 1465, 1717
BtsI	GCAGTG	2 cut(s)	1005, 1569
BtsIMutI	CAGTG	3 cut(s)	1005, 1529, 1569
BveI	ACCTGC	1 cut(s)	319
Cac8I	GCNNGC	4 cut(s)	98, 144, 749, 915
CciI	TCATGA	1 cut(s)	334
CfoI	GCGC	2 cut(s)	276, 432
CseI	GACGC	1 cut(s)	772
Csp6I	GTAC	2 cut(s)	256, 920
CviQI	GTAC	2 cut(s)	256, 920
DdeI	CTNAG	2 cut(s)	753, 1048
DpnI	GATC	4 cut(s)	477, 591, 796, 1128
DpnII	GATC	4 cut(s)	475, 589, 794, 1126
EaeI	YGGCCR	3 cut(s)	6, 172, 1533
EagI	CGGCCG	1 cut(s)	172
Eam1104I	CTCTTC	3 cut(s)	1176, 1694, 1700
EarI	CTCTTC	3 cut(s)	1176, 1694, 1700
EclXI	CGGCCG	1 cut(s)	172
Eco130I	CCWWGG	2 cut(s)	1469, 1665
Eco47III	AGCGCT	1 cut(s)	275
Eco52I	CGGCCG	1 cut(s)	172
Eco57I	CTGAAG	2 cut(s)	503, 807
EcoNI	CCTNNNNNAGG	1 cut(s)	1047
EcoRI	GAATTC	1 cut(s)	267
EcoRII	CCWGG	5 cut(s)	379, 422, 460, 1246, 1751
EcoT14I	CCWWGG	2 cut(s)	1469, 1665
ErhI	CCWWGG	2 cut(s)	1469, 1665
FalI	AAGNNNNNCTT	2 cut(s)	1050, 1082
FaqI	GGGAC	2 cut(s)	362, 1638
Fnu4HI	GCNGC	5 cut(s)	9, 101, 175, 195, 428
FokI	GGATG	4 cut(s)	140, 641, 1452, 1724
Fsp4HI	GCNGC	5 cut(s)	9, 101, 175, 195, 428
FspBI	CTAG	4 cut(s)	449, 587, 1055, 1197
FspI	TGCGCA	1 cut(s)	431
GlaI	GCGC	2 cut(s)	275, 431
GluI	GCNGC	5 cut(s)	9, 101, 175, 195, 428
GsuI	CTGGAG	2 cut(s)	52, 1230
HaeII	RGCGCY	1 cut(s)	277
HaeIII	GGCC	5 cut(s)	8, 78, 174, 422, 1535
HapII	CCGG	2 cut(s)	171, 233
HgaI	GACGC	1 cut(s)	772
HhaI	GCGC	2 cut(s)	276, 432
Hin6I	GCGC	2 cut(s)	274, 430
HinP1I	GCGC	2 cut(s)	274, 430
HindIII	AAGCTT	1 cut(s)	1639
HinfI	GANTC	5 cut(s)	468, 1241, 1310, 1460, 1687
HpaII	CCGG	2 cut(s)	171, 233
HphI	GGTGA	6 cut(s)	53, 410, 470, 1486, 1595, 1618
Hpy166II	GTNNAC	1 cut(s)	1182
Hpy188I	TCNGA	5 cut(s)	280, 660, 799, 964, 1040
Hpy188III	TCNNGA	6 cut(s)	335, 1050, 1213, 1441, 1684, 1734
Hpy8I	GTNNAC	1 cut(s)	1182
HpyAV	CCTTC	7 cut(s)	32, 89, 412, 831, 1159, 1671, 1738
HpyCH4III	ACNGT	1 cut(s)	217
HpyF10VI	GCNNNNNNNGC	8 cut(s)	227, 282, 325, 670, 914, 1499, 1541, 1571
HpyF3I	CTNAG	2 cut(s)	753, 1048
HspAI	GCGC	2 cut(s)	274, 430
Kzo9I	GATC	4 cut(s)	475, 589, 794, 1126
LguI	GCTCTTC	1 cut(s)	1176
LmnI	GCTCC	3 cut(s)	133, 235, 281
Lsp1109I	GCAGC	2 cut(s)	112, 414
LweI	GCATC	1 cut(s)	985
MaeI	CTAG	4 cut(s)	449, 587, 1055, 1197
MaeIII	GTNAC	2 cut(s)	351, 1101
MalI	GATC	4 cut(s)	477, 591, 796, 1128
MboI	GATC	4 cut(s)	475, 589, 794, 1126
MfeI	CAATTG	3 cut(s)	771, 872, 1332
MflI	RGATCY	1 cut(s)	794
MhlI	GDGCHC	1 cut(s)	206
MlsI	TGGCCA	1 cut(s)	1535
MluNI	TGGCCA	1 cut(s)	1535
MlyI	GAGTC	2 cut(s)	462, 1454
MmeI	TCCRAC	3 cut(s)	155, 500, 1258
Mox20I	TGGCCA	1 cut(s)	1535
MroXI	GAANNNNTTC	1 cut(s)	1266
MscI	TGGCCA	1 cut(s)	1535
MseI	TTAA	2 cut(s)	689, 1068
MslI	CAYNNNNRTG	2 cut(s)	1434, 1581
Msp20I	TGGCCA	1 cut(s)	1535
MspA1I	CMGCKG	1 cut(s)	1075
MspI	CCGG	2 cut(s)	171, 233
MspR9I	CCNGG	5 cut(s)	381, 424, 462, 1248, 1753
MunI	CAATTG	3 cut(s)	771, 872, 1332
Mva1269I	GAATGC	1 cut(s)	196
MvaI	CCWGG	5 cut(s)	381, 424, 462, 1248, 1753
MvnI	CGCG	2 cut(s)	293, 313
MwoI	GCNNNNNNNGC	8 cut(s)	227, 282, 325, 670, 914, 1499, 1541, 1571
NdeII	GATC	4 cut(s)	475, 589, 794, 1126
NlaIV	GGNNCC	1 cut(s)	231
NmeAIII	GCCGAG	2 cut(s)	54, 1270
NsbI	TGCGCA	1 cut(s)	431
NspI	RCATGY	4 cut(s)	751, 993, 1439, 1631
PaeI	GCATGC	1 cut(s)	751
PagI	TCATGA	1 cut(s)	334
PciI	ACATGT	2 cut(s)	989, 1627
PciSI	GCTCTTC	1 cut(s)	1176
PctI	GAATGC	1 cut(s)	196
PdmI	GAANNNNTTC	1 cut(s)	1266
PfeI	GAWTC	3 cut(s)	1241, 1310, 1687
PflFI	GACNNNGTC	1 cut(s)	766
PflMI	CCANNNNNTGG	1 cut(s)	1424
PfoI	TCCNGGA	2 cut(s)	460, 1751
PkrI	GCNGC	5 cut(s)	10, 102, 176, 196, 429
PleI	GAGTC	2 cut(s)	462, 1454
PpsI	GAGTC	2 cut(s)	462, 1454
PscI	ACATGT	2 cut(s)	989, 1627
PsiI	TTATAA	1 cut(s)	858
Psp6I	CCWGG	5 cut(s)	379, 422, 460, 1246, 1751
PspGI	CCWGG	5 cut(s)	379, 422, 460, 1246, 1751
PspN4I	GGNNCC	1 cut(s)	231
PsuI	RGATCY	1 cut(s)	794
PsyI	GACNNNGTC	1 cut(s)	766
PvuII	CAGCTG	1 cut(s)	1075
RsaI	GTAC	2 cut(s)	257, 921
RsaNI	GTAC	2 cut(s)	256, 920
RseI	CAYNNNNRTG	2 cut(s)	1434, 1581
SapI	GCTCTTC	1 cut(s)	1176
SaqAI	TTAA	2 cut(s)	689, 1068
SatI	GCNGC	5 cut(s)	9, 101, 175, 195, 428
Sau3AI	GATC	4 cut(s)	475, 589, 794, 1126
SchI	GAGTC	2 cut(s)	462, 1454
ScrFI	CCNGG	5 cut(s)	381, 424, 462, 1248, 1753
SduI	GDGCHC	1 cut(s)	206
SfaNI	GCATC	1 cut(s)	985
SmiMI	CAYNNNNRTG	2 cut(s)	1434, 1581
SmlI	CTYRAG	1 cut(s)	147
SmoI	CTYRAG	1 cut(s)	147
SphI	GCATGC	1 cut(s)	751
SsiI	CCGC	3 cut(s)	9, 175, 194
SspI	AATATT	1 cut(s)	1599
SspMI	CTAG	4 cut(s)	449, 587, 1055, 1197
StyD4I	CCNGG	5 cut(s)	379, 422, 460, 1246, 1751
StyI	CCWWGG	2 cut(s)	1469, 1665
TaaI	ACNGT	1 cut(s)	217
TaqI	TCGA	3 cut(s)	105, 265, 1129
TatI	WGTACW	1 cut(s)	919
TauI	GCSGC	3 cut(s)	11, 177, 197
TfiI	GAWTC	3 cut(s)	1241, 1310, 1687
Tru1I	TTAA	2 cut(s)	689, 1068
Tru9I	TTAA	2 cut(s)	689, 1068
TscAI	CASTG	3 cut(s)	1005, 1536, 1576
TseI	GCWGC	2 cut(s)	100, 427
TspRI	CASTG	3 cut(s)	1005, 1536, 1576
Tth111I	GACNNNGTC	1 cut(s)	766
Van91I	CCANNNNNTGG	1 cut(s)	1424
XagI	CCTNNNNNAGG	1 cut(s)	1047
XapI	RAATTY	4 cut(s)	267, 511, 546, 667
XceI	RCATGY	4 cut(s)	751, 993, 1439, 1631
XmnI	GAANNNNTTC	1 cut(s)	1266
XspI	CTAG	4 cut(s)	449, 587, 1055, 1197

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.