Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0012171

Physical Location & Seq

Genomic Coordinates Reverse (-)

3997800 .. 3998492

Gene Structure 693 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0052200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 693 bp

ATGGCTGATCCTCTGGTTGCTAGGTGCCTTTACTCTGGCAAAGGTTATATGATTCCTTTGAATCAATGTATGAGCTACTCTGAGTTGTATGAAGACATTTTCCGTATATTCCAGTTTTTAACAAGTGATGTTATTGAGCTTCAGTATTCAGTTCCTGGTTGTGAAGTTTGTTTTCTTCGCAACGATCGTGATTTCCATATGCTGTTTTGCTCTGCTAGAATACATAAGTTAGATTGTGTCGAGATTTCAGTTTTAAAGATTGGTGGAAGTTGCAGCAGAACTTGTTCAGTGGATAGTTGTTCGGAAGTTATTGATGAATACGATTATTTGGGGGATGCATTCAGGACTGAAGTTCACAAGACTTATTTGTCTGATGAGTGGAGTTCTTATATTAATCATGTCGGGAATAAGTTTCATGGTGCTGCCGAGCTCCGTGAGAAACTCAGGAAGTATGCAATTGCAGTTGGTTTCGAGTTTGTATTCCTGAGAAATGATTTGGACCGTATTCATGCAGTCTGTGAAAATGTTGGAACCGAAGGTTGTGATTGGCATCTTCGCGCTTTTTCATCATCTGCCAATGGTTGCCTTTATATAACAAAGTTGAATAATATTCACACTTGCAAGGGTGTAGTTAGGACTCAAAAGCACATGGCTTTTGGGATCCAAGGTTGTCAAGACTTGCATTGCTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010501 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD DUF4217 Helicase_C

Protein Analysis

230

Amino Acids

26.23

Weight (kDa)

5.91

Isoelectric Point (pI)

38.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DBD_Tnp_Mut	PF03108	133 - 194	6.3e-10	MuDR family transposase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0012171)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40700
fragaria_vesca	FvH4_1g09140 FvH4_1g09140 FvH4_1g09140
malus_domestica	MD02G1096800.v1.1
prunus_persica	Prupe.7G194100_v2.0.a1
pyrus_communis	pycom02g07680 pycom15g19610
rosa_chinensis	RchiOBHm_Chr2g0095531
rosa_laevigata	RLG00000016576
rosa_multiflora	Rmu_co8308315.1_g000001 Rmu_co8333539.1_g000001
rosa_roxburghii	Rroxscaffold_2G00146220
rosa_rugosa	Rorug02G0052200
rosa_samantha	Rh2AG100000 Rh2BG101400 Rh2CG103600 Rh2DG100900
rosa_wichuraiana	Rw2G007590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	367
AccB1I	GGYRCC	1 cut(s)	24
AccII	CGCG	1 cut(s)	558
AclWI	GGATC	3 cut(s)	2, 655, 668
AcuI	CTGAAG	2 cut(s)	125, 369
AgsI	TTSAA	2 cut(s)	61, 604
AjnI	CCWGG	1 cut(s)	154
AluBI	AGCT	3 cut(s)	75, 139, 430
AluI	AGCT	3 cut(s)	75, 139, 430
Alw21I	GWGCWC	1 cut(s)	432
AlwI	GGATC	3 cut(s)	2, 655, 668
AlwNI	CAGNNNCTG	1 cut(s)	155
ApeKI	GCWGC	3 cut(s)	273, 422, 687
AseI	ATTAAT	1 cut(s)	393
Asp700I	GAANNNNTTC	1 cut(s)	283
AspLEI	GCGC	1 cut(s)	560
AspS9I	GGNCC	1 cut(s)	499
AvaII	GGWCC	1 cut(s)	499
BamHI	GGATCC	1 cut(s)	660
BanI	GGYRCC	1 cut(s)	24
BanII	GRGCYC	1 cut(s)	432
BbsI	GAAGAC	1 cut(s)	99
Bbv12I	GWGCWC	1 cut(s)	432
BbvI	GCAGC	3 cut(s)	285, 409, 674
BciT130I	CCWGG	1 cut(s)	156
BfaI	CTAG	2 cut(s)	21, 216
BisI	GCNGC	3 cut(s)	274, 423, 688
BlsI	GCNGC	3 cut(s)	275, 424, 689
Bme1390I	CCNGG	1 cut(s)	156
Bme18I	GGWCC	1 cut(s)	499
BmgT120I	GGNCC	1 cut(s)	499
BmiI	GGNNCC	3 cut(s)	26, 532, 662
BmrFI	CCNGG	1 cut(s)	156
BmsI	GCATC	2 cut(s)	325, 559
BpiI	GAAGAC	1 cut(s)	99
BsaBI	GATNNNNATC	1 cut(s)	549
BsaJI	CCNNGG	1 cut(s)	664
Bse1I	ACTGG	1 cut(s)	112
Bse3DI	GCAATG	1 cut(s)	682
Bse8I	GATNNNNATC	1 cut(s)	549
BseBI	CCWGG	1 cut(s)	156
BseDI	CCNNGG	1 cut(s)	664
BseGI	GGATG	1 cut(s)	340
BseJI	GATNNNNATC	1 cut(s)	549
BseMI	GCAATG	1 cut(s)	682
BseMII	CTCAG	3 cut(s)	72, 457, 476
BseNI	ACTGG	1 cut(s)	112
BseXI	GCAGC	3 cut(s)	285, 409, 674
Bsh1236I	CGCG	1 cut(s)	558
Bsh1285I	CGRYCG	1 cut(s)	187
BshNI	GGYRCC	1 cut(s)	24
BsiEI	CGRYCG	1 cut(s)	187
BsiHKAI	GWGCWC	1 cut(s)	432
BsmI	GAATGC	1 cut(s)	338
Bsp1286I	GDGCHC	1 cut(s)	432
Bsp143I	GATC	3 cut(s)	7, 184, 660
BspCNI	CTCAG	3 cut(s)	73, 456, 477
BspFNI	CGCG	1 cut(s)	558
BspLI	GGNNCC	3 cut(s)	26, 532, 662
BspPI	GGATC	3 cut(s)	2, 655, 668
BspT107I	GGYRCC	1 cut(s)	24
BsrDI	GCAATG	1 cut(s)	682
BsrI	ACTGG	1 cut(s)	112
BssECI	CCNNGG	1 cut(s)	664
BssMI	GATC	3 cut(s)	7, 184, 660
BssT1I	CCWWGG	1 cut(s)	664
Bst2UI	CCWGG	1 cut(s)	156
Bst4CI	ACNGT	1 cut(s)	503
BstDEI	CTNAG	3 cut(s)	81, 443, 485
BstF5I	GGATG	1 cut(s)	340
BstFNI	CGCG	1 cut(s)	558
BstHHI	GCGC	1 cut(s)	560
BstKTI	GATC	3 cut(s)	10, 187, 663
BstMBI	GATC	3 cut(s)	7, 184, 660
BstMCI	CGRYCG	1 cut(s)	187
BstNI	CCWGG	1 cut(s)	156
BstSCI	CCNGG	1 cut(s)	154
BstUI	CGCG	1 cut(s)	558
BstV1I	GCAGC	3 cut(s)	285, 409, 674
BstV2I	GAAGAC	1 cut(s)	99
BstX2I	RGATCY	1 cut(s)	660
BstYI	RGATCY	1 cut(s)	660
BtsCI	GGATG	1 cut(s)	340
BtsIMutI	CAGTG	1 cut(s)	294
CaiI	CAGNNNCTG	1 cut(s)	155
CfoI	GCGC	1 cut(s)	560
Cfr13I	GGNCC	1 cut(s)	499
CviAII	CATG	4 cut(s)	398, 416, 509, 649
CviJI	RGCY	5 cut(s)	5, 75, 139, 430, 653
CviKI_1	RGCY	5 cut(s)	5, 75, 139, 430, 653
DdeI	CTNAG	3 cut(s)	81, 443, 485
DpnI	GATC	3 cut(s)	9, 186, 662
DpnII	GATC	3 cut(s)	7, 184, 660
DraI	TTTAAA	1 cut(s)	255
DrdI	GACNNNNNNGTC	1 cut(s)	367
DseDI	GACNNNNNNGTC	1 cut(s)	367
Ecl136II	GAGCTC	1 cut(s)	430
Eco130I	CCWWGG	1 cut(s)	664
Eco24I	GRGCYC	1 cut(s)	432
Eco47I	GGWCC	1 cut(s)	499
Eco53kI	GAGCTC	1 cut(s)	430
Eco57I	CTGAAG	2 cut(s)	125, 369
EcoICRI	GAGCTC	1 cut(s)	430
EcoRII	CCWGG	1 cut(s)	154
EcoT14I	CCWWGG	1 cut(s)	664
EcoT22I	ATGCAT	1 cut(s)	340
EcoT38I	GRGCYC	1 cut(s)	432
ErhI	CCWWGG	1 cut(s)	664
FaeI	CATG	4 cut(s)	401, 419, 512, 652
FatI	CATG	4 cut(s)	397, 415, 508, 648
FauNDI	CATATG	1 cut(s)	198
Fnu4HI	GCNGC	3 cut(s)	274, 423, 688
FokI	GGATG	1 cut(s)	347
FriOI	GRGCYC	1 cut(s)	432
Fsp4HI	GCNGC	3 cut(s)	274, 423, 688
FspBI	CTAG	2 cut(s)	21, 216
GlaI	GCGC	1 cut(s)	559
GluI	GCNGC	3 cut(s)	274, 423, 688
HhaI	GCGC	1 cut(s)	560
Hin1II	CATG	4 cut(s)	401, 419, 512, 652
Hin6I	GCGC	1 cut(s)	558
HinP1I	GCGC	1 cut(s)	558
HinfI	GANTC	3 cut(s)	52, 61, 637
Hpy166II	GTNNAC	1 cut(s)	355
Hpy188I	TCNGA	3 cut(s)	82, 304, 373
Hpy188III	TCNNGA	7 cut(s)	188, 241, 343, 403, 445, 484, 674
Hpy8I	GTNNAC	1 cut(s)	355
HpyAV	CCTTC	1 cut(s)	530
HpyCH4III	ACNGT	1 cut(s)	503
HpyCH4V	TGCA	7 cut(s)	273, 338, 455, 461, 512, 621, 682
HpyF3I	CTNAG	3 cut(s)	81, 443, 485
Hsp92II	CATG	4 cut(s)	401, 419, 512, 652
HspAI	GCGC	1 cut(s)	558
Kzo9I	GATC	3 cut(s)	7, 184, 660
LmnI	GCTCC	1 cut(s)	435
LpnPI	CCDG	7 cut(s)	21, 125, 141, 168, 328, 430, 497
Lsp1109I	GCAGC	3 cut(s)	285, 409, 674
LweI	GCATC	2 cut(s)	325, 559
MaeI	CTAG	2 cut(s)	21, 216
MalI	GATC	3 cut(s)	9, 186, 662
MboI	GATC	3 cut(s)	7, 184, 660
MboII	GAAGA	3 cut(s)	104, 167, 545
MfeI	CAATTG	1 cut(s)	456
MflI	RGATCY	1 cut(s)	660
MhlI	GDGCHC	1 cut(s)	432
MluCI	AATT	1 cut(s)	456
MlyI	GAGTC	1 cut(s)	631
MmeI	TCCRAC	1 cut(s)	508
MnlI	CCTC	1 cut(s)	21
Mph1103I	ATGCAT	1 cut(s)	340
MroXI	GAANNNNTTC	1 cut(s)	283
MseI	TTAA	3 cut(s)	119, 254, 393
MspR9I	CCNGG	1 cut(s)	156
MunI	CAATTG	1 cut(s)	456
Mva1269I	GAATGC	1 cut(s)	338
MvaI	CCWGG	1 cut(s)	156
MvnI	CGCG	1 cut(s)	558
NdeI	CATATG	1 cut(s)	198
NdeII	GATC	3 cut(s)	7, 184, 660
NlaIII	CATG	4 cut(s)	401, 419, 512, 652
NlaIV	GGNNCC	3 cut(s)	26, 532, 662
NmeAIII	GCCGAG	1 cut(s)	451
NsiI	ATGCAT	1 cut(s)	340
PcsI	WCGNNNNNNNCGW	1 cut(s)	184
PctI	GAATGC	1 cut(s)	338
PdmI	GAANNNNTTC	1 cut(s)	283
PfeI	GAWTC	2 cut(s)	52, 61
PkrI	GCNGC	3 cut(s)	275, 424, 689
Ple19I	CGATCG	1 cut(s)	187
PleI	GAGTC	1 cut(s)	631
PpsI	GAGTC	1 cut(s)	631
PshBI	ATTAAT	1 cut(s)	393
Psp124BI	GAGCTC	1 cut(s)	432
Psp6I	CCWGG	1 cut(s)	154
PspGI	CCWGG	1 cut(s)	154
PspN4I	GGNNCC	3 cut(s)	26, 532, 662
PspPI	GGNCC	1 cut(s)	499
PstNI	CAGNNNCTG	1 cut(s)	155
PsuI	RGATCY	1 cut(s)	660
PvuI	CGATCG	1 cut(s)	187
SacI	GAGCTC	1 cut(s)	432
SaqAI	TTAA	3 cut(s)	119, 254, 393
SatI	GCNGC	3 cut(s)	274, 423, 688
Sau3AI	GATC	3 cut(s)	7, 184, 660
Sau96I	GGNCC	1 cut(s)	499
SchI	GAGTC	1 cut(s)	631
ScrFI	CCNGG	1 cut(s)	156
SduI	GDGCHC	1 cut(s)	432
SetI	ASST	7 cut(s)	26, 46, 77, 141, 432, 541, 670
SfaNI	GCATC	2 cut(s)	325, 559
SinI	GGWCC	1 cut(s)	499
Sse9I	AATT	1 cut(s)	456
SspI	AATATT	1 cut(s)	610
SspMI	CTAG	2 cut(s)	21, 216
SstI	GAGCTC	1 cut(s)	432
StyD4I	CCNGG	1 cut(s)	154
StyI	CCWWGG	1 cut(s)	664
TaaI	ACNGT	1 cut(s)	503
TaqI	TCGA	2 cut(s)	240, 471
TasI	AATT	1 cut(s)	456
TfiI	GAWTC	2 cut(s)	52, 61
Tru1I	TTAA	3 cut(s)	119, 254, 393
Tru9I	TTAA	3 cut(s)	119, 254, 393
TscAI	CASTG	1 cut(s)	294
TseI	GCWGC	3 cut(s)	273, 422, 687
TspDTI	ATGAA	5 cut(s)	105, 330, 404, 497, 555
TspGWI	ACGGA	2 cut(s)	92, 422
TspRI	CASTG	1 cut(s)	294
VpaK11BI	GGWCC	1 cut(s)	499
VspI	ATTAAT	1 cut(s)	393
XmnI	GAANNNNTTC	1 cut(s)	283
XspI	CTAG	2 cut(s)	21, 216
Zsp2I	ATGCAT	1 cut(s)	340

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.