Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8308315.1

Orthogroup ID

OG0012171

Physical Location & Seq

Genomic Coordinates Reverse (-)

124 .. 847

Gene Structure 724 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8308315.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

ctgggtgaaagaggagattcaatattatttttacagccaattgaaatcgattatttgaaagaattggagaagcatggtgtttctctagtagagtatcctctcctcaaagtattagatagtttcccactatatggtcagcagcatgtcaggaagtttgtttccattgatgcacatccttgggtgctggctttgcaaaaggcacttgaagcgtttacagatcagccaaacataaagcctctggcaaagaatgcattttgctcttgggttcgtgcatacactgcccaccgtggtgagctgaagagaatttttgtagcaaagaaacttcacttgggacatgttgcaaaaagctttgcattaaaagaacaaccttccttggttgggggttcgtttcacaagcaagcacagaagaggaagagagacgaaaggcagaagggaggaatgaaaaagaggaagtttaacaggaaaacatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010501 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD DUF4217 Helicase_C

Protein Analysis

156

Amino Acids

17.96

Weight (kDa)

10.07

Isoelectric Point (pI)

36.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012171)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40700
fragaria_vesca	FvH4_1g09140 FvH4_1g09140 FvH4_1g09140
malus_domestica	MD02G1096800.v1.1
prunus_persica	Prupe.7G194100_v2.0.a1
pyrus_communis	pycom02g07680 pycom15g19610
rosa_chinensis	RchiOBHm_Chr2g0095531
rosa_laevigata	RLG00000016576
rosa_multiflora	Rmu_co8308315.1_g000001 Rmu_co8333539.1_g000001
rosa_roxburghii	Rroxscaffold_2G00146220
rosa_rugosa	Rorug02G0052200
rosa_samantha	Rh2AG100000 Rh2BG101400 Rh2CG103600 Rh2DG100900
rosa_wichuraiana	Rw2G007590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	131
AcsI	RAATTY	1 cut(s)	303
AcuI	CTGAAG	1 cut(s)	317
AfiI	CCNNNNNNNGG	2 cut(s)	131, 378
AflIII	ACRYGT	1 cut(s)	334
AgsI	TTSAA	4 cut(s)	21, 44, 58, 206
AjuI	GAANNNNNNNTTGG	2 cut(s)	311, 343
AleI	CACNNNNGTG	1 cut(s)	288
AluBI	AGCT	2 cut(s)	295, 348
AluI	AGCT	2 cut(s)	295, 348
Alw26I	GTCTC	1 cut(s)	411
ApeKI	GCWGC	1 cut(s)	139
ApoI	RAATTY	1 cut(s)	303
AsuHPI	GGTGA	2 cut(s)	17, 302
BbvI	GCAGC	1 cut(s)	151
BciVI	GTATCC	1 cut(s)	105
BcoDI	GTCTC	1 cut(s)	411
BfaI	CTAG	1 cut(s)	86
BfuI	GTATCC	1 cut(s)	105
BisI	GCNGC	1 cut(s)	140
BlsI	GCNGC	1 cut(s)	141
BmsI	GCATC	1 cut(s)	157
Bsa29I	ATCGAT	1 cut(s)	48
BsaBI	GATNNNNATC	1 cut(s)	171
BsaJI	CCNNGG	3 cut(s)	176, 286, 372
Bsc4I	CCNNNNNNNGG	2 cut(s)	131, 378
Bse8I	GATNNNNATC	1 cut(s)	171
BseCI	ATCGAT	1 cut(s)	48
BseDI	CCNNGG	3 cut(s)	176, 286, 372
BseGI	GGATG	1 cut(s)	172
BseJI	GATNNNNATC	1 cut(s)	171
BseLI	CCNNNNNNNGG	2 cut(s)	131, 378
BseRI	GAGGAG	2 cut(s)	27, 92
BseXI	GCAGC	1 cut(s)	151
BshVI	ATCGAT	1 cut(s)	48
BslFI	GGGAC	1 cut(s)	345
BslI	CCNNNNNNNGG	2 cut(s)	131, 378
BsmAI	GTCTC	1 cut(s)	411
BsmBI	CGTCTC	1 cut(s)	411
BsmFI	GGGAC	1 cut(s)	345
BsmI	GAATGC	1 cut(s)	253
Bsp143I	GATC	1 cut(s)	217
BspDI	ATCGAT	1 cut(s)	48
BssECI	CCNNGG	3 cut(s)	176, 286, 372
BssMI	GATC	1 cut(s)	217
BssT1I	CCWWGG	2 cut(s)	176, 372
Bst4CI	ACNGT	1 cut(s)	287
Bst6I	CTCTTC	3 cut(s)	293, 401, 407
BstAPI	GCANNNNNTGC	2 cut(s)	248, 278
BstC8I	GCNNGC	2 cut(s)	186, 399
BstDSI	CCRYGG	1 cut(s)	286
BstF5I	GGATG	1 cut(s)	172
BstKTI	GATC	1 cut(s)	220
BstMAI	GTCTC	1 cut(s)	411
BstMBI	GATC	1 cut(s)	217
BstMWI	GCNNNNNNNGC	4 cut(s)	190, 206, 248, 278
BstNSI	RCATGY	2 cut(s)	146, 338
BstV1I	GCAGC	1 cut(s)	151
Bsu15I	ATCGAT	1 cut(s)	48
BsuI	GTATCC	1 cut(s)	105
BsuTUI	ATCGAT	1 cut(s)	48
BtgI	CCRYGG	1 cut(s)	286
BtsCI	GGATG	1 cut(s)	172
BtsI	GCAGTG	1 cut(s)	276
BtsIMutI	CAGTG	1 cut(s)	276
Cac8I	GCNNGC	2 cut(s)	186, 399
ClaI	ATCGAT	1 cut(s)	48
CviAII	CATG	4 cut(s)	74, 143, 335, 468
CviJI	RGCY	6 cut(s)	37, 188, 223, 235, 295, 348
CviKI_1	RGCY	6 cut(s)	37, 188, 223, 235, 295, 348
DpnI	GATC	1 cut(s)	219
DpnII	GATC	1 cut(s)	217
Eam1104I	CTCTTC	3 cut(s)	293, 401, 407
EarI	CTCTTC	3 cut(s)	293, 401, 407
Eco130I	CCWWGG	2 cut(s)	176, 372
Eco57I	CTGAAG	1 cut(s)	317
EcoT14I	CCWWGG	2 cut(s)	176, 372
EcoT22I	ATGCAT	1 cut(s)	253
ErhI	CCWWGG	2 cut(s)	176, 372
Esp3I	CGTCTC	1 cut(s)	411
FaeI	CATG	4 cut(s)	77, 146, 338, 471
FaiI	YATR	8 cut(s)	75, 130, 132, 144, 230, 274, 336, 469
FaqI	GGGAC	1 cut(s)	345
FatI	CATG	4 cut(s)	73, 142, 334, 467
Fnu4HI	GCNGC	1 cut(s)	140
FokI	GGATG	1 cut(s)	159
Fsp4HI	GCNGC	1 cut(s)	140
FspBI	CTAG	1 cut(s)	86
GluI	GCNGC	1 cut(s)	140
Hin1II	CATG	4 cut(s)	77, 146, 338, 471
HindIII	AAGCTT	1 cut(s)	346
HinfI	GANTC	1 cut(s)	17
HphI	GGTGA	2 cut(s)	17, 302
Hpy166II	GTNNAC	1 cut(s)	213
Hpy188III	TCNNGA	1 cut(s)	148
Hpy8I	GTNNAC	1 cut(s)	213
HpyAV	CCTTC	2 cut(s)	378, 424
HpyCH4III	ACNGT	1 cut(s)	287
HpyCH4V	TGCA	6 cut(s)	170, 193, 251, 272, 341, 353
HpyF10VI	GCNNNNNNNGC	4 cut(s)	190, 206, 248, 278
Hsp92II	CATG	4 cut(s)	77, 146, 338, 471
Kzo9I	GATC	1 cut(s)	217
LpnPI	CCDG	4 cut(s)	133, 170, 224, 445
Lsp1109I	GCAGC	1 cut(s)	151
LweI	GCATC	1 cut(s)	157
MaeI	CTAG	1 cut(s)	86
MalI	GATC	1 cut(s)	219
MboI	GATC	1 cut(s)	217
MboII	GAAGA	3 cut(s)	310, 418, 424
MfeI	CAATTG	1 cut(s)	39
MluCI	AATT	3 cut(s)	39, 62, 303
MnlI	CCTC	7 cut(s)	5, 108, 113, 246, 402, 428, 441
Mph1103I	ATGCAT	1 cut(s)	253
MseI	TTAA	2 cut(s)	356, 456
MslI	CAYNNNNRTG	1 cut(s)	288
MunI	CAATTG	1 cut(s)	39
Mva1269I	GAATGC	1 cut(s)	253
MwoI	GCNNNNNNNGC	4 cut(s)	190, 206, 248, 278
NdeII	GATC	1 cut(s)	217
NlaIII	CATG	4 cut(s)	77, 146, 338, 471
NsiI	ATGCAT	1 cut(s)	253
NspI	RCATGY	2 cut(s)	146, 338
OliI	CACNNNNGTG	1 cut(s)	288
PciI	ACATGT	1 cut(s)	334
PctI	GAATGC	1 cut(s)	253
PfeI	GAWTC	1 cut(s)	17
PflMI	CCANNNNNTGG	1 cut(s)	131
PkrI	GCNGC	1 cut(s)	141
PscI	ACATGT	1 cut(s)	334
RseI	CAYNNNNRTG	1 cut(s)	288
SaqAI	TTAA	2 cut(s)	356, 456
SatI	GCNGC	1 cut(s)	140
Sau3AI	GATC	1 cut(s)	217
SetI	ASST	3 cut(s)	297, 350, 370
SfaNI	GCATC	1 cut(s)	157
SmiMI	CAYNNNNRTG	1 cut(s)	288
Sse9I	AATT	3 cut(s)	39, 62, 303
SspI	AATATT	1 cut(s)	24
SspMI	CTAG	1 cut(s)	86
StyI	CCWWGG	2 cut(s)	176, 372
TaaI	ACNGT	1 cut(s)	287
TaqI	TCGA	1 cut(s)	48
TasI	AATT	3 cut(s)	39, 62, 303
TfiI	GAWTC	1 cut(s)	17
Tru1I	TTAA	2 cut(s)	356, 456
Tru9I	TTAA	2 cut(s)	356, 456
TscAI	CASTG	1 cut(s)	283
TseI	GCWGC	1 cut(s)	139
TspDTI	ATGAA	1 cut(s)	455
TspRI	CASTG	1 cut(s)	283
Van91I	CCANNNNNTGG	1 cut(s)	131
XapI	RAATTY	1 cut(s)	303
XceI	RCATGY	2 cut(s)	146, 338
XspI	CTAG	1 cut(s)	86
Zsp2I	ATGCAT	1 cut(s)	253

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.