Prupe.7G195900_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0018345
Physical Location & Seq
Reverse (-)
18531618 .. 18532830
1213 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G195900.1_v2.0.a1.CDS.4

Sequence Viewer

Length: 795 bp
ATGCAAAGTAAGCTTACCGGAAAAACCCAGATTAAGAAGCCAAGCTCAAAAGTTTTTGATGATGACAAGGTGCAAAAACCTCCCAAAGAAGAAGTGAATGAGTGGCCTCATGGATTGCTGACAATTGGGACATTAGGAAATAGCGACTTGAAAGAAGATCAACAGAGCAACCCACCACCCTCCCCAAAAAACCATCCCCATGGATTTACACCAGAGGAAGTAAGAAACATTCAGAATGAGTTGAACTCCTACTTGAATGAAGAAGCTGATCATCAATCAAATTCAGGCACAGAGCTTGAAAAAGTTCCAAACTTTCTTCCACTGGACAAGTTTCTAAACAGACAGTCAAGCTTGAAAGCTGAGAGAAATGGTAACAATGCAGATTGTGATGAGCCTAAAGAAAATGGCAGTCGCTTCCAACGGAGCGGCAATGTTGTTCTCAGCCGAGGGAAAGATGTTTGTTTGGAGAACACAAACACTGCCATTGGCAAGAAGTCGTTGTCTTTTCTCCTCAAGAAGGTGTGTGTTTGTAGAAGTGGGTTTGCACCAGCTGCTGCTCCTGGTCTAAGAGATCCAATCCTTGAGTCAAGAATGGAGAAGATATTGAAGGCAATACTTCACAAGAAGATATACCCCAAAAGTTCAAGTGCTTCAACAATGTCCATGAAAAAGTACTTGGAGAACGGACACAATATTGCCAAGTCTGCCAATGATGAAGAAATAAATATTGATAAGGAAGATGAGGGAAGCAAATGGGTCAAGACTGATTCTGAATATATTGTTCTAGAGATATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

265

Amino Acids

29.47

Weight (kDa)

7.02

Isoelectric Point (pI)

46.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018345)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g09000
prunus_persica Prupe.7G195900_v2.0.a1
rosa_laevigata RLG00000016565
rosa_multiflora Rmu_co8252679.1_g000001
rosa_rugosa Rorug02G0050800
rosa_samantha Rh2AG099000 Rh2BG100200 Rh2CG102300 Rh2DG099800
rosa_wichuraiana Rw2G007480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 426
AciI CCGC 1 cut(s) 426
AclWI GGATC 1 cut(s) 566
AcsI RAATTY 1 cut(s) 280
AfaI GTAC 1 cut(s) 674
AfiI CCNNNNNNNGG 1 cut(s) 517
AgsI TTSAA 8 cut(s) 151, 244, 256, 299, 355, 607, 645, 654
AjnI CCWGG 1 cut(s) 559
AjuI GAANNNNNNNTTGG 2 cut(s) 659, 691
AluBI AGCT 7 cut(s) 13, 45, 266, 295, 351, 359, 551
AluI AGCT 7 cut(s) 13, 45, 266, 295, 351, 359, 551
AlwI GGATC 1 cut(s) 566
AlwNI CAGNNNCTG 1 cut(s) 554
AoxI GGCC 1 cut(s) 104
ApeKI GCWGC 2 cut(s) 551, 554
ApoI RAATTY 1 cut(s) 280
Asp700I GAANNNNTTC 1 cut(s) 303
BbvI GCAGC 2 cut(s) 538, 541
BccI CCATC 1 cut(s) 201
BciT130I CCWGG 1 cut(s) 561
BclI TGATCA 1 cut(s) 268
BfaI CTAG 1 cut(s) 785
BisI GCNGC 3 cut(s) 427, 552, 555
BlsI GCNGC 3 cut(s) 428, 553, 556
BmcAI AGTACT 1 cut(s) 674
Bme1390I CCNGG 1 cut(s) 561
BmrFI CCNGG 1 cut(s) 561
BplI GAGNNNNNCTC 2 cut(s) 230, 262
BpuEI CTTGAG 2 cut(s) 497, 602
BsaJI CCNNGG 2 cut(s) 199, 445
BsaWI WCCGGW 1 cut(s) 17
Bsc4I CCNNNNNNNGG 1 cut(s) 517
Bse1I ACTGG 1 cut(s) 327
Bse3DI GCAATG 1 cut(s) 436
BseBI CCWGG 1 cut(s) 561
BseDI CCNNGG 2 cut(s) 199, 445
BseGI GGATG 1 cut(s) 193
BseLI CCNNNNNNNGG 1 cut(s) 517
BseMI GCAATG 1 cut(s) 436
BseMII CTCAG 2 cut(s) 351, 454
BseNI ACTGG 1 cut(s) 327
BseRI GAGGAG 1 cut(s) 500
BseXI GCAGC 2 cut(s) 538, 541
BshFI GGCC 1 cut(s) 106
BsiSI CCGG 1 cut(s) 18
BslFI GGGAC 1 cut(s) 142
BslI CCNNNNNNNGG 1 cut(s) 517
BsmFI GGGAC 1 cut(s) 142
BsnI GGCC 1 cut(s) 106
Bsp143I GATC 3 cut(s) 157, 268, 571
Bsp19I CCATGG 1 cut(s) 199
BspACI CCGC 1 cut(s) 426
BspANI GGCC 1 cut(s) 106
BspCNI CTCAG 2 cut(s) 352, 453
BspPI GGATC 1 cut(s) 566
BsrBI CCGCTC 1 cut(s) 426
BsrDI GCAATG 1 cut(s) 436
BsrI ACTGG 1 cut(s) 327
BssECI CCNNGG 2 cut(s) 199, 445
BssMI GATC 3 cut(s) 157, 268, 571
BssT1I CCWWGG 1 cut(s) 199
Bst2UI CCWGG 1 cut(s) 561
Bst4CI ACNGT 1 cut(s) 345
BstAPI GCANNNNNTGC 1 cut(s) 551
BstDEI CTNAG 3 cut(s) 360, 440, 566
BstDSI CCRYGG 1 cut(s) 199
BstENI CCTNNNNNAGG 1 cut(s) 515
BstF5I GGATG 1 cut(s) 193
BstKTI GATC 3 cut(s) 160, 271, 574
BstMBI GATC 3 cut(s) 157, 268, 571
BstMWI GCNNNNNNNGC 3 cut(s) 10, 551, 704
BstNI CCWGG 1 cut(s) 561
BstSCI CCNGG 1 cut(s) 559
BstV1I GCAGC 2 cut(s) 538, 541
BstX2I RGATCY 1 cut(s) 571
BstXI CCANNNNNNTGG 1 cut(s) 200
BstYI RGATCY 1 cut(s) 571
BsuRI GGCC 1 cut(s) 106
BtgI CCRYGG 1 cut(s) 199
BtsCI GGATG 1 cut(s) 193
BtsI GCAGTG 1 cut(s) 477
BtsIMutI CAGTG 2 cut(s) 320, 477
CaiI CAGNNNCTG 1 cut(s) 554
Csp6I GTAC 1 cut(s) 673
CviAII CATG 3 cut(s) 110, 200, 664
CviQI GTAC 1 cut(s) 673
DdeI CTNAG 3 cut(s) 360, 440, 566
DpnI GATC 3 cut(s) 159, 270, 573
DpnII GATC 3 cut(s) 157, 268, 571
Eco130I CCWWGG 1 cut(s) 199
EcoNI CCTNNNNNAGG 1 cut(s) 515
EcoRII CCWGG 1 cut(s) 559
EcoT14I CCWWGG 1 cut(s) 199
ErhI CCWWGG 1 cut(s) 199
FaeI CATG 3 cut(s) 113, 203, 667
FaiI YATR 6 cut(s) 111, 201, 631, 665, 777, 793
FaqI GGGAC 1 cut(s) 142
FatI CATG 3 cut(s) 109, 199, 663
FbaI TGATCA 1 cut(s) 268
Fnu4HI GCNGC 3 cut(s) 427, 552, 555
FokI GGATG 1 cut(s) 180
Fsp4HI GCNGC 3 cut(s) 427, 552, 555
FspBI CTAG 1 cut(s) 785
GluI GCNGC 3 cut(s) 427, 552, 555
HaeIII GGCC 1 cut(s) 106
HapII CCGG 1 cut(s) 18
Hin1II CATG 3 cut(s) 113, 203, 667
HindIII AAGCTT 2 cut(s) 11, 349
HinfI GANTC 2 cut(s) 584, 767
HpaII CCGG 1 cut(s) 18
Hpy188I TCNGA 2 cut(s) 234, 772
Hpy188III TCNNGA 4 cut(s) 514, 588, 760, 785
HpyAV CCTTC 2 cut(s) 511, 601
HpyCH4III ACNGT 1 cut(s) 345
HpyCH4V TGCA 4 cut(s) 4, 73, 380, 545
HpyF10VI GCNNNNNNNGC 3 cut(s) 10, 551, 704
HpyF3I CTNAG 3 cut(s) 360, 440, 566
Hsp92II CATG 3 cut(s) 113, 203, 667
Ksp22I TGATCA 1 cut(s) 268
Kzo9I GATC 3 cut(s) 157, 268, 571
LmnI GCTCC 2 cut(s) 423, 562
LpnPI CCDG 8 cut(s) 31, 41, 225, 270, 308, 546, 561, 573
Lsp1109I GCAGC 2 cut(s) 538, 541
MaeI CTAG 1 cut(s) 785
MaeIII GTNAC 1 cut(s) 371
MalI GATC 3 cut(s) 159, 270, 573
MbiI CCGCTC 1 cut(s) 426
MboI GATC 3 cut(s) 157, 268, 571
MboII GAAGA 8 cut(s) 101, 167, 272, 308, 610, 637, 728, 749
MfeI CAATTG 1 cut(s) 123
MflI RGATCY 1 cut(s) 571
MluCI AATT 2 cut(s) 123, 280
MlyI GAGTC 1 cut(s) 593
MmeI TCCRAC 1 cut(s) 442
MnlI CCTC 7 cut(s) 90, 117, 190, 208, 440, 521, 736
MroXI GAANNNNTTC 1 cut(s) 303
MseI TTAA 1 cut(s) 33
MslI CAYNNNNRTG 1 cut(s) 198
MspA1I CMGCKG 1 cut(s) 551
MspI CCGG 1 cut(s) 18
MspR9I CCNGG 1 cut(s) 561
MunI CAATTG 1 cut(s) 123
MvaI CCWGG 1 cut(s) 561
MwoI GCNNNNNNNGC 3 cut(s) 10, 551, 704
NcoI CCATGG 1 cut(s) 199
NdeII GATC 3 cut(s) 157, 268, 571
NlaIII CATG 3 cut(s) 113, 203, 667
NmeAIII GCCGAG 1 cut(s) 470
PdmI GAANNNNTTC 1 cut(s) 303
PfeI GAWTC 1 cut(s) 767
PkrI GCNGC 3 cut(s) 428, 553, 556
PleI GAGTC 1 cut(s) 592
PpsI GAGTC 1 cut(s) 592
Psp6I CCWGG 1 cut(s) 559
PspGI CCWGG 1 cut(s) 559
PstNI CAGNNNCTG 1 cut(s) 554
PsuI RGATCY 1 cut(s) 571
PvuII CAGCTG 1 cut(s) 551
RsaI GTAC 1 cut(s) 674
RsaNI GTAC 1 cut(s) 673
RseI CAYNNNNRTG 1 cut(s) 198
SaqAI TTAA 1 cut(s) 33
SatI GCNGC 3 cut(s) 427, 552, 555
Sau3AI GATC 3 cut(s) 157, 268, 571
ScaI AGTACT 1 cut(s) 674
SchI GAGTC 1 cut(s) 593
ScrFI CCNGG 1 cut(s) 561
SmiMI CAYNNNNRTG 1 cut(s) 198
SmlI CTYRAG 2 cut(s) 512, 581
SmoI CTYRAG 2 cut(s) 512, 581
Sse9I AATT 2 cut(s) 123, 280
SsiI CCGC 1 cut(s) 426
SspI AATATT 2 cut(s) 694, 727
SspMI CTAG 1 cut(s) 785
StyD4I CCNGG 1 cut(s) 559
StyI CCWWGG 1 cut(s) 199
TaaI ACNGT 1 cut(s) 345
TasI AATT 2 cut(s) 123, 280
TatI WGTACW 1 cut(s) 672
TauI GCSGC 1 cut(s) 429
TfiI GAWTC 1 cut(s) 767
Tru1I TTAA 1 cut(s) 33
Tru9I TTAA 1 cut(s) 33
TscAI CASTG 2 cut(s) 327, 484
TseI GCWGC 2 cut(s) 551, 554
TspDTI ATGAA 3 cut(s) 273, 680, 729
TspGWI ACGGA 2 cut(s) 436, 699
TspRI CASTG 2 cut(s) 327, 484
XagI CCTNNNNNAGG 1 cut(s) 515
XapI RAATTY 1 cut(s) 280
XbaI TCTAGA 1 cut(s) 784
XmnI GAANNNNTTC 1 cut(s) 303
XspI CTAG 1 cut(s) 785
ZrmI AGTACT 1 cut(s) 674
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.