RING-like zinc finger
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_1g01770 |
| malus_domestica | MD02G1013400.v1.1 MD15G1160200.v1.1 |
| prunus_persica | Prupe.7G255200_v2.0.a1 Prupe.7G255200_v2.0.a1 Prupe.7G255200_v2.0.a1 |
| pyrus_communis | pycom02g01250 pycom15g14410 |
| rosa_chinensis | RchiOBHm_Chr2g0086731 |
| rosa_laevigata | RLG00000015786 |
| rosa_multiflora | Rmu_sc0000335.1_g000009 Rmu_sc0004626.1_g000001 Rmu_sc0030160.1_g000001 Rmu_sc0035211.1_g000001 |
| rosa_roxburghii | Rroxscaffold_2G00154240 |
| rosa_rugosa | Rorug01G0469200 |
| rosa_samantha | Rh2AG021300 Rh2BG021200 Rh2CG022100 Rh2DG021900 |
| rosa_wichuraiana | Rw2G001730 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 254 |
| AasI | GACNNNNNNGTC | 2 cut(s) | 1243, 1610 |
| Acc36I | ACCTGC | 1 cut(s) | 254 |
| AccBSI | CCGCTC | 1 cut(s) | 618 |
| AccI | GTMKAC | 2 cut(s) | 19, 817 |
| AciI | CCGC | 3 cut(s) | 31, 501, 616 |
| AclWI | GGATC | 3 cut(s) | 274, 1005, 1119 |
| AcsI | RAATTY | 4 cut(s) | 610, 1089, 1314, 1485 |
| AcuI | CTGAAG | 4 cut(s) | 459, 645, 672, 1308 |
| AcyI | GRCGYC | 1 cut(s) | 1593 |
| AfaI | GTAC | 4 cut(s) | 229, 439, 451, 1252 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 40, 231, 751, 1134 |
| AflII | CTTAAG | 1 cut(s) | 1394 |
| AflIII | ACRYGT | 1 cut(s) | 1518 |
| AgsI | TTSAA | 3 cut(s) | 260, 314, 933 |
| AhlI | ACTAGT | 1 cut(s) | 376 |
| AjnI | CCWGG | 2 cut(s) | 345, 1077 |
| AleI | CACNNNNGTG | 1 cut(s) | 1206 |
| AluBI | AGCT | 5 cut(s) | 140, 446, 692, 1064, 1292 |
| AluI | AGCT | 5 cut(s) | 140, 446, 692, 1064, 1292 |
| Alw21I | GWGCWC | 2 cut(s) | 284, 1220 |
| Alw26I | GTCTC | 4 cut(s) | 226, 490, 1357, 1618 |
| AlwI | GGATC | 3 cut(s) | 274, 1005, 1119 |
| AlwNI | CAGNNNCTG | 3 cut(s) | 488, 692, 1361 |
| Ama87I | CYCGRG | 2 cut(s) | 45, 1254 |
| AoxI | GGCC | 3 cut(s) | 42, 891, 1153 |
| ApaI | GGGCCC | 1 cut(s) | 46 |
| ApeKI | GCWGC | 3 cut(s) | 290, 662, 692 |
| ApoI | RAATTY | 4 cut(s) | 610, 1089, 1314, 1485 |
| AseI | ATTAAT | 1 cut(s) | 183 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 739, 1143 |
| AspS9I | GGNCC | 2 cut(s) | 42, 43 |
| AsuHPI | GGTGA | 2 cut(s) | 235, 1049 |
| AvaI | CYCGRG | 2 cut(s) | 45, 1254 |
| AxyI | CCTNAGG | 1 cut(s) | 567 |
| BaeGI | GKGCMC | 2 cut(s) | 46, 238 |
| BanII | GRGCYC | 2 cut(s) | 29, 46 |
| BauI | CACGAG | 2 cut(s) | 696, 1206 |
| Bbv12I | GWGCWC | 2 cut(s) | 284, 1220 |
| BbvI | GCAGC | 3 cut(s) | 302, 649, 679 |
| BccI | CCATC | 8 cut(s) | 43, 118, 311, 721, 803, 1011, 1046, 1512 |
| BceAI | ACGGC | 2 cut(s) | 1130, 1570 |
| BciT130I | CCWGG | 2 cut(s) | 347, 1079 |
| BcoDI | GTCTC | 4 cut(s) | 226, 490, 1357, 1618 |
| BcuI | ACTAGT | 1 cut(s) | 376 |
| BfaI | CTAG | 6 cut(s) | 377, 447, 861, 1001, 1122, 1248 |
| BfmI | CTRYAG | 2 cut(s) | 441, 1191 |
| BfrI | CTTAAG | 1 cut(s) | 1394 |
| BfuAI | ACCTGC | 1 cut(s) | 254 |
| BisI | GCNGC | 3 cut(s) | 291, 663, 693 |
| BlsI | GCNGC | 3 cut(s) | 292, 664, 694 |
| BmcAI | AGTACT | 3 cut(s) | 439, 451, 1252 |
| Bme1390I | CCNGG | 2 cut(s) | 347, 1079 |
| BmeT110I | CYCGRG | 2 cut(s) | 45, 1254 |
| BmgT120I | GGNCC | 2 cut(s) | 42, 43 |
| BmiI | GGNNCC | 3 cut(s) | 28, 44, 100 |
| BmrFI | CCNGG | 2 cut(s) | 347, 1079 |
| BmrI | ACTGGG | 2 cut(s) | 32, 476 |
| BmsI | GCATC | 4 cut(s) | 502, 865, 913, 1379 |
| BmuI | ACTGGG | 2 cut(s) | 32, 476 |
| BoxI | GACNNNNGTC | 1 cut(s) | 1167 |
| BpmI | CTGGAG | 1 cut(s) | 208 |
| BsaBI | GATNNNNATC | 2 cut(s) | 183, 271 |
| BsaHI | GRCGYC | 1 cut(s) | 1593 |
| BsaI | GGTCTC | 2 cut(s) | 226, 1357 |
| BsaJI | CCNNGG | 4 cut(s) | 346, 1078, 1128, 1573 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 40, 231, 751, 1134 |
| Bse1I | ACTGG | 4 cut(s) | 27, 225, 294, 482 |
| Bse21I | CCTNAGG | 1 cut(s) | 567 |
| Bse3DI | GCAATG | 1 cut(s) | 874 |
| Bse8I | GATNNNNATC | 2 cut(s) | 183, 271 |
| BseBI | CCWGG | 2 cut(s) | 347, 1079 |
| BseDI | CCNNGG | 4 cut(s) | 346, 1078, 1128, 1573 |
| BseGI | GGATG | 5 cut(s) | 133, 517, 928, 1315, 1438 |
| BseJI | GATNNNNATC | 2 cut(s) | 183, 271 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 40, 231, 751, 1134 |
| BseMI | GCAATG | 1 cut(s) | 874 |
| BseMII | CTCAG | 7 cut(s) | 132, 267, 558, 569, 984, 1368, 1455 |
| BseNI | ACTGG | 4 cut(s) | 27, 225, 294, 482 |
| BseRI | GAGGAG | 5 cut(s) | 70, 91, 94, 375, 1590 |
| BseSI | GKGCMC | 2 cut(s) | 46, 238 |
| BseXI | GCAGC | 3 cut(s) | 302, 649, 679 |
| BshFI | GGCC | 3 cut(s) | 44, 893, 1155 |
| BsiHKAI | GWGCWC | 2 cut(s) | 284, 1220 |
| BsiHKCI | CYCGRG | 2 cut(s) | 45, 1254 |
| BslFI | GGGAC | 2 cut(s) | 1343, 1493 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 40, 231, 751, 1134 |
| BsmAI | GTCTC | 4 cut(s) | 226, 490, 1357, 1618 |
| BsmBI | CGTCTC | 1 cut(s) | 1618 |
| BsmFI | GGGAC | 2 cut(s) | 1343, 1493 |
| BsmI | GAATGC | 1 cut(s) | 1117 |
| BsnI | GGCC | 3 cut(s) | 44, 893, 1155 |
| Bso31I | GGTCTC | 2 cut(s) | 226, 1357 |
| BsoBI | CYCGRG | 2 cut(s) | 45, 1254 |
| Bsp120I | GGGCCC | 1 cut(s) | 42 |
| Bsp1286I | GDGCHC | 5 cut(s) | 29, 46, 238, 284, 1220 |
| Bsp143I | GATC | 4 cut(s) | 130, 266, 997, 1124 |
| BspACI | CCGC | 3 cut(s) | 31, 501, 616 |
| BspANI | GGCC | 3 cut(s) | 44, 893, 1155 |
| BspCNI | CTCAG | 7 cut(s) | 133, 268, 559, 568, 985, 1367, 1456 |
| BspHI | TCATGA | 4 cut(s) | 412, 834, 1009, 1507 |
| BspLI | GGNNCC | 3 cut(s) | 28, 44, 100 |
| BspMI | ACCTGC | 1 cut(s) | 254 |
| BspPI | GGATC | 3 cut(s) | 274, 1005, 1119 |
| BspTI | CTTAAG | 1 cut(s) | 1394 |
| BspTNI | GGTCTC | 2 cut(s) | 226, 1357 |
| BsrBI | CCGCTC | 1 cut(s) | 618 |
| BsrDI | GCAATG | 1 cut(s) | 874 |
| BsrI | ACTGG | 4 cut(s) | 27, 225, 294, 482 |
| BssECI | CCNNGG | 4 cut(s) | 346, 1078, 1128, 1573 |
| BssMI | GATC | 4 cut(s) | 130, 266, 997, 1124 |
| BssNAI | GTATAC | 1 cut(s) | 818 |
| BssNI | GRCGYC | 1 cut(s) | 1593 |
| BssSI | CACGAG | 2 cut(s) | 696, 1206 |
| Bst1107I | GTATAC | 1 cut(s) | 818 |
| Bst2BI | CACGAG | 2 cut(s) | 696, 1206 |
| Bst2UI | CCWGG | 2 cut(s) | 347, 1079 |
| Bst4CI | ACNGT | 4 cut(s) | 240, 286, 1446, 1607 |
| Bst6I | CTCTTC | 1 cut(s) | 1236 |
| BstACI | GRCGYC | 1 cut(s) | 1593 |
| BstAFI | CTTAAG | 1 cut(s) | 1394 |
| BstC8I | GCNNGC | 1 cut(s) | 1284 |
| BstDEI | CTNAG | 7 cut(s) | 141, 276, 555, 567, 993, 1354, 1464 |
| BstEII | GGTNACC | 1 cut(s) | 1073 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 749 |
| BstF5I | GGATG | 5 cut(s) | 133, 517, 928, 1315, 1438 |
| BstKTI | GATC | 4 cut(s) | 133, 269, 1000, 1127 |
| BstMAI | GTCTC | 4 cut(s) | 226, 490, 1357, 1618 |
| BstMBI | GATC | 4 cut(s) | 130, 266, 997, 1124 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 1224 |
| BstNI | CCWGG | 2 cut(s) | 347, 1079 |
| BstNSI | RCATGY | 2 cut(s) | 1216, 1522 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 1167 |
| BstPI | GGTNACC | 1 cut(s) | 1073 |
| BstSCI | CCNGG | 2 cut(s) | 345, 1077 |
| BstSFI | CTRYAG | 2 cut(s) | 441, 1191 |
| BstSLI | GKGCMC | 2 cut(s) | 46, 238 |
| BstV1I | GCAGC | 3 cut(s) | 302, 649, 679 |
| BstX2I | RGATCY | 2 cut(s) | 997, 1124 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1208 |
| BstYI | RGATCY | 2 cut(s) | 997, 1124 |
| BstZ17I | GTATAC | 1 cut(s) | 818 |
| Bsu36I | CCTNAGG | 1 cut(s) | 567 |
| BsuRI | GGCC | 3 cut(s) | 44, 893, 1155 |
| BtgZI | GCGATG | 1 cut(s) | 1304 |
| BtsCI | GGATG | 5 cut(s) | 133, 517, 928, 1315, 1438 |
| BtsI | GCAGTG | 1 cut(s) | 334 |
| BtsIMutI | CAGTG | 4 cut(s) | 282, 334, 1451, 1599 |
| BveI | ACCTGC | 1 cut(s) | 254 |
| Cac8I | GCNNGC | 1 cut(s) | 1284 |
| CaiI | CAGNNNCTG | 3 cut(s) | 488, 692, 1361 |
| CciI | TCATGA | 4 cut(s) | 412, 834, 1009, 1507 |
| Cfr13I | GGNCC | 2 cut(s) | 42, 43 |
| CseI | GACGC | 3 cut(s) | 566, 945, 1582 |
| Csp6I | GTAC | 4 cut(s) | 228, 438, 450, 1251 |
| CviQI | GTAC | 4 cut(s) | 228, 438, 450, 1251 |
| DdeI | CTNAG | 7 cut(s) | 141, 276, 555, 567, 993, 1354, 1464 |
| DpnI | GATC | 4 cut(s) | 132, 268, 999, 1126 |
| DpnII | GATC | 4 cut(s) | 130, 266, 997, 1124 |
| DraI | TTTAAA | 1 cut(s) | 460 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 1243, 1610 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 1243, 1610 |
| Eam1104I | CTCTTC | 1 cut(s) | 1236 |
| EarI | CTCTTC | 1 cut(s) | 1236 |
| Eco24I | GRGCYC | 2 cut(s) | 29, 46 |
| Eco31I | GGTCTC | 2 cut(s) | 226, 1357 |
| Eco32I | GATATC | 1 cut(s) | 1629 |
| Eco57I | CTGAAG | 4 cut(s) | 459, 645, 672, 1308 |
| Eco81I | CCTNAGG | 1 cut(s) | 567 |
| Eco88I | CYCGRG | 2 cut(s) | 45, 1254 |
| Eco91I | GGTNACC | 1 cut(s) | 1073 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 749 |
| EcoO65I | GGTNACC | 1 cut(s) | 1073 |
| EcoRI | GAATTC | 2 cut(s) | 610, 1089 |
| EcoRII | CCWGG | 2 cut(s) | 345, 1077 |
| EcoRV | GATATC | 1 cut(s) | 1629 |
| EcoT22I | ATGCAT | 1 cut(s) | 928 |
| EcoT38I | GRGCYC | 2 cut(s) | 29, 46 |
| Esp3I | CGTCTC | 1 cut(s) | 1618 |
| FaqI | GGGAC | 2 cut(s) | 1343, 1493 |
| FauI | CCCGC | 2 cut(s) | 38, 623 |
| FauNDI | CATATG | 1 cut(s) | 1454 |
| FblI | GTMKAC | 2 cut(s) | 19, 817 |
| Fnu4HI | GCNGC | 3 cut(s) | 291, 663, 693 |
| FokI | GGATG | 5 cut(s) | 120, 524, 935, 1322, 1445 |
| FriOI | GRGCYC | 2 cut(s) | 29, 46 |
| Fsp4HI | GCNGC | 3 cut(s) | 291, 663, 693 |
| FspBI | CTAG | 6 cut(s) | 377, 447, 861, 1001, 1122, 1248 |
| GluI | GCNGC | 3 cut(s) | 291, 663, 693 |
| GsuI | CTGGAG | 1 cut(s) | 208 |
| HaeIII | GGCC | 3 cut(s) | 44, 893, 1155 |
| HgaI | GACGC | 3 cut(s) | 566, 945, 1582 |
| Hin1I | GRCGYC | 1 cut(s) | 1593 |
| HincII | GTYRAC | 3 cut(s) | 20, 1381, 1414 |
| HindII | GTYRAC | 3 cut(s) | 20, 1381, 1414 |
| HphI | GGTGA | 2 cut(s) | 235, 1049 |
| Hpy166II | GTNNAC | 6 cut(s) | 20, 243, 818, 1381, 1414, 1565 |
| Hpy188I | TCNGA | 9 cut(s) | 195, 277, 300, 478, 558, 609, 706, 1129, 1624 |
| Hpy8I | GTNNAC | 6 cut(s) | 20, 243, 818, 1381, 1414, 1565 |
| Hpy99I | CGWCG | 2 cut(s) | 1113, 1116 |
| HpyAV | CCTTC | 5 cut(s) | 755, 771, 891, 942, 1469 |
| HpyCH4III | ACNGT | 4 cut(s) | 240, 286, 1446, 1607 |
| HpyCH4IV | ACGT | 3 cut(s) | 109, 169, 1181 |
| HpyCH4V | TGCA | 7 cut(s) | 161, 290, 515, 878, 926, 1370, 1442 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 1224 |
| HpyF3I | CTNAG | 7 cut(s) | 141, 276, 555, 567, 993, 1354, 1464 |
| HpySE526I | ACGT | 3 cut(s) | 109, 169, 1181 |
| Hsp92I | GRCGYC | 1 cut(s) | 1593 |
| Kzo9I | GATC | 4 cut(s) | 130, 266, 997, 1124 |
| LmnI | GCTCC | 3 cut(s) | 32, 104, 1061 |
| Lsp1109I | GCAGC | 3 cut(s) | 302, 649, 679 |
| LweI | GCATC | 4 cut(s) | 502, 865, 913, 1379 |
| MaeI | CTAG | 6 cut(s) | 377, 447, 861, 1001, 1122, 1248 |
| MaeII | ACGT | 3 cut(s) | 109, 169, 1181 |
| MaeIII | GTNAC | 5 cut(s) | 341, 1073, 1332, 1400, 1448 |
| MalI | GATC | 4 cut(s) | 132, 268, 999, 1126 |
| MbiI | CCGCTC | 1 cut(s) | 618 |
| MboI | GATC | 4 cut(s) | 130, 266, 997, 1124 |
| MboII | GAAGA | 8 cut(s) | 140, 326, 465, 818, 837, 1253, 1487, 1623 |
| MflI | RGATCY | 2 cut(s) | 997, 1124 |
| MhlI | GDGCHC | 5 cut(s) | 29, 46, 238, 284, 1220 |
| MluCI | AATT | 9 cut(s) | 261, 493, 532, 610, 969, 1089, 1272, 1314, 1485 |
| MlyI | GAGTC | 4 cut(s) | 57, 1253, 1376, 1408 |
| MmeI | TCCRAC | 3 cut(s) | 873, 989, 1641 |
| Mph1103I | ATGCAT | 1 cut(s) | 928 |
| MroXI | GAANNNNTTC | 2 cut(s) | 739, 1143 |
| MseI | TTAA | 5 cut(s) | 183, 323, 459, 1395, 1421 |
| MslI | CAYNNNNRTG | 2 cut(s) | 828, 1206 |
| MspA1I | CMGCKG | 1 cut(s) | 140 |
| MspCI | CTTAAG | 1 cut(s) | 1394 |
| MspR9I | CCNGG | 2 cut(s) | 347, 1079 |
| Mva1269I | GAATGC | 1 cut(s) | 1117 |
| MvaI | CCWGG | 2 cut(s) | 347, 1079 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 1224 |
| NdeI | CATATG | 1 cut(s) | 1454 |
| NdeII | GATC | 4 cut(s) | 130, 266, 997, 1124 |
| NlaIV | GGNNCC | 3 cut(s) | 28, 44, 100 |
| NmeAIII | GCCGAG | 1 cut(s) | 1598 |
| NmuCI | GTSAC | 2 cut(s) | 1332, 1400 |
| NsiI | ATGCAT | 1 cut(s) | 928 |
| NspI | RCATGY | 2 cut(s) | 1216, 1522 |
| OliI | CACNNNNGTG | 1 cut(s) | 1206 |
| PagI | TCATGA | 4 cut(s) | 412, 834, 1009, 1507 |
| PaqCI | CACCTGC | 1 cut(s) | 254 |
| PciI | ACATGT | 1 cut(s) | 1518 |
| PctI | GAATGC | 1 cut(s) | 1117 |
| PdmI | GAANNNNTTC | 2 cut(s) | 739, 1143 |
| PfeI | GAWTC | 8 cut(s) | 419, 604, 640, 740, 774, 959, 1067, 1197 |
| PflFI | GACNNNGTC | 1 cut(s) | 482 |
| PkrI | GCNGC | 3 cut(s) | 292, 664, 694 |
| PleI | GAGTC | 4 cut(s) | 56, 1252, 1376, 1407 |
| PpsI | GAGTC | 4 cut(s) | 56, 1252, 1376, 1407 |
| PscI | ACATGT | 1 cut(s) | 1518 |
| PshAI | GACNNNNGTC | 1 cut(s) | 1167 |
| PshBI | ATTAAT | 1 cut(s) | 183 |
| Psp6I | CCWGG | 2 cut(s) | 345, 1077 |
| PspEI | GGTNACC | 1 cut(s) | 1073 |
| PspGI | CCWGG | 2 cut(s) | 345, 1077 |
| PspN4I | GGNNCC | 3 cut(s) | 28, 44, 100 |
| PspOMI | GGGCCC | 1 cut(s) | 42 |
| PspPI | GGNCC | 2 cut(s) | 42, 43 |
| PstNI | CAGNNNCTG | 3 cut(s) | 488, 692, 1361 |
| PsuI | RGATCY | 2 cut(s) | 997, 1124 |
| PsyI | GACNNNGTC | 1 cut(s) | 482 |
| PvuII | CAGCTG | 1 cut(s) | 140 |
| RsaI | GTAC | 4 cut(s) | 229, 439, 451, 1252 |
| RsaNI | GTAC | 4 cut(s) | 228, 438, 450, 1251 |
| RseI | CAYNNNNRTG | 2 cut(s) | 828, 1206 |
| SalI | GTCGAC | 1 cut(s) | 18 |
| SaqAI | TTAA | 5 cut(s) | 183, 323, 459, 1395, 1421 |
| SatI | GCNGC | 3 cut(s) | 291, 663, 693 |
| Sau3AI | GATC | 4 cut(s) | 130, 266, 997, 1124 |
| Sau96I | GGNCC | 2 cut(s) | 42, 43 |
| ScaI | AGTACT | 3 cut(s) | 439, 451, 1252 |
| SchI | GAGTC | 4 cut(s) | 57, 1253, 1376, 1408 |
| ScrFI | CCNGG | 2 cut(s) | 347, 1079 |
| SduI | GDGCHC | 5 cut(s) | 29, 46, 238, 284, 1220 |
| SfaNI | GCATC | 4 cut(s) | 502, 865, 913, 1379 |
| SfcI | CTRYAG | 2 cut(s) | 441, 1191 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 828, 1206 |
| SmlI | CTYRAG | 1 cut(s) | 1394 |
| SmoI | CTYRAG | 1 cut(s) | 1394 |
| SpeI | ACTAGT | 1 cut(s) | 376 |
| Sse9I | AATT | 9 cut(s) | 261, 493, 532, 610, 969, 1089, 1272, 1314, 1485 |
| SsiI | CCGC | 3 cut(s) | 31, 501, 616 |
| SspMI | CTAG | 6 cut(s) | 377, 447, 861, 1001, 1122, 1248 |
| StyD4I | CCNGG | 2 cut(s) | 345, 1077 |
| TaaI | ACNGT | 4 cut(s) | 240, 286, 1446, 1607 |
| TaiI | ACGT | 3 cut(s) | 112, 172, 1184 |
| TaqI | TCGA | 5 cut(s) | 8, 19, 748, 1047, 1489 |
| TaqII | GACCGA | 1 cut(s) | 1253 |
| TasI | AATT | 9 cut(s) | 261, 493, 532, 610, 969, 1089, 1272, 1314, 1485 |
| TatI | WGTACW | 4 cut(s) | 227, 437, 449, 1250 |
| TfiI | GAWTC | 8 cut(s) | 419, 604, 640, 740, 774, 959, 1067, 1197 |
| Tru1I | TTAA | 5 cut(s) | 183, 323, 459, 1395, 1421 |
| Tru9I | TTAA | 5 cut(s) | 183, 323, 459, 1395, 1421 |
| TscAI | CASTG | 4 cut(s) | 289, 334, 1451, 1606 |
| TseFI | GTSAC | 2 cut(s) | 1332, 1400 |
| TseI | GCWGC | 3 cut(s) | 290, 662, 692 |
| Tsp45I | GTSAC | 2 cut(s) | 1332, 1400 |
| TspDTI | ATGAA | 7 cut(s) | 323, 432, 812, 998, 1119, 1307, 1326 |
| TspGWI | ACGGA | 1 cut(s) | 1600 |
| TspRI | CASTG | 4 cut(s) | 289, 334, 1451, 1606 |
| Tth111I | GACNNNGTC | 1 cut(s) | 482 |
| Vha464I | CTTAAG | 1 cut(s) | 1394 |
| VspI | ATTAAT | 1 cut(s) | 183 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 749 |
| XapI | RAATTY | 4 cut(s) | 610, 1089, 1314, 1485 |
| XbaI | TCTAGA | 2 cut(s) | 860, 1121 |
| XceI | RCATGY | 2 cut(s) | 1216, 1522 |
| XmiI | GTMKAC | 2 cut(s) | 19, 817 |
| XmnI | GAANNNNTTC | 2 cut(s) | 739, 1143 |
| XspI | CTAG | 6 cut(s) | 377, 447, 861, 1001, 1122, 1248 |
| ZrmI | AGTACT | 3 cut(s) | 439, 451, 1252 |
| Zsp2I | ATGCAT | 1 cut(s) | 928 |