Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0010512

Physical Location & Seq

Genomic Coordinates Reverse (-)

1750128 .. 1753981

Gene Structure 3854 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ46224

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1626 bp

ATGGGCTCGAGCACTAGCCGACTGGGTTCGCGCCCATCTCGGCCCCGACCCAACCGCATCGCCAATCGTTCCCTACTCTCCTCTCTCGTCTGCGGAGGCTCGTCCTCACGTGCCGCTCACGAGATGGAAGATCATCCAGCTGAGTGTCTTGTGAGATACGCAGAGAATTGTGATCGGGGTAAAAATCCAGTTCAGAACTCCACAGACGTATCCTCGTTGATCTCCAGTGCAGGGGCAGGGTCCACCTTCCCTAATACTGAAATTGGATCCTCATCTCAGAGCGATGTTCCAGCCGGTCAGGGTACTTATTTTGAAGAAGGTTTAAGAAGTCTTGACACTAGTAACCAGGGGAAGTGCTTGTCCAGAAGTAAGGAGCTCATTTCTCATCCGGTAAGTGCTGGTTGTAATCATGATGAATCTAGTAGGGATAATAGTACTACAGCTAGTACTTCGTTTAAAGAACAACAATCTTCCCACCCAGTCTCTGTGAATAGTTCGGCTAACATGGATGCAGTCAATGGCTCCGCAGACAAGAATGTATCTCAGGCGTGTCCTGTGGTTATGCGTCCAAGTAGTTCTTCTCCACAAGGGATTGGGAATTCCCGTTCTGATGACATGTCCGTTGAGAATCATGTAGCTGAAGTAATGGCTGTCCATAATACTAATGCTGATACTGATTCTGTTCATGTTTCTGATATACCATTACCTTTTCCCTCACGCGGAAATGATTCCCTTCGGGAGGTACCTTCTGGCTTAGGATTCCTTGTGTCCAACAGGGAACAAAGCCGGGAAGATGGAAGTGTAGTTCATGTTGATGTCATGAGCATTTCTTCGAACTTTTTGTCCAGTAGTAATGCTGATACAAGTAACCGTGAGTCCAGAAGGAATGGTAGGCGTCTGTTTTGGGATGCATTTTCAAGACGCAGTTCCAGAAGGTTTATTGATTCTCCAACCATACTTTTCTCTACTGATGAGACTGAGGATCTAGGATTTCATGACAGATGGCTACTTGGTTTGAGTGGTGATTTTCTTGATGATCGAAGTGGAGCTGATTCTGGTCACCGGGTCAATAGAACTCCCAACTTGAGTGAACGGCGCCGGCACTCTAGATCTGAGGTCTGGGAACGGCTTCGTGGTGGCCTTGATGATAATGCTCACCGCAATACTACTTGTCCTACAGGAATTCACCCGGGTGGCATGTGCTCCTGTGGTTCATTCTTGATGACAGAGGAGTCTAGTGCTCGGGCAAGTATATCGAGAATTGTCATGCTTGCTGAAGCTCTATTCGAGGTTTTGGATGAAATTCATCGCCAACCTGTGTCACTTTCACTGTCTATGGTCTCAGTCCCTGCCCCAGCATCTGTTGTTGATTCGTTTCCTCTTAAGAGTCACACCAAGGTTGACAAATTGAAGCATGGGGATGATGCTGAACAGTGCCACATCTGCCTTGCTGAGTATGAGGAAGGGGACAAAATTCGAGTTCTGCCCTGCCACCATGAGTATCACATGTCATGTGTGGATAAGTGGCTTAAAGAGATACATGGAGTTTGTCCACTTTGTCGAGGAGATGTTCGTGAAGGTTTAAACGACTGTTCCGTATCTAACTCAGGAATATCTTCTATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000578 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007275 GO:0007389 GO:0008134 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009790 GO:0009798 GO:0009880 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0032501 GO:0032502 GO:0036211 GO:0042802 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044464 GO:0048856 GO:0051603 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_11 zf-RING_2

Protein Analysis

541

Amino Acids

58.72

Weight (kDa)

5.82

Isoelectric Point (pI)

64.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-rbx1	PF12678	477 - 521	2.1e-07	RING-H2 zinc finger domain
zf-RING_2	PF13639	478 - 521	3.1e-12	Ring finger domain
zf-RING_11	PF17123	478 - 506	3.2e-08	RING-like zinc finger
zf-C3HC4_2	PF13923	478 - 520	3.7e-06	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4	PF00097	479 - 520	9e-08	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010512)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g01770
malus_domestica	MD02G1013400.v1.1 MD15G1160200.v1.1
prunus_persica	Prupe.7G255200_v2.0.a1 Prupe.7G255200_v2.0.a1 Prupe.7G255200_v2.0.a1
pyrus_communis	pycom02g01250 pycom15g14410
rosa_chinensis	RchiOBHm_Chr2g0086731
rosa_laevigata	RLG00000015786
rosa_multiflora	Rmu_sc0000335.1_g000009 Rmu_sc0004626.1_g000001 Rmu_sc0030160.1_g000001 Rmu_sc0035211.1_g000001
rosa_roxburghii	Rroxscaffold_2G00154240
rosa_rugosa	Rorug01G0469200
rosa_samantha	Rh2AG021300 Rh2BG021200 Rh2CG022100 Rh2DG021900
rosa_wichuraiana	Rw2G001730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1231
Acc65I	GGTACC	1 cut(s)	742
AccB1I	GGYRCC	2 cut(s)	742, 1095
AccBSI	CCGCTC	1 cut(s)	116
AccII	CGCG	2 cut(s)	31, 720
AciI	CCGC	6 cut(s)	55, 93, 114, 525, 720, 1159
AclWI	GGATC	3 cut(s)	261, 274, 990
AcsI	RAATTY	4 cut(s)	598, 1182, 1302, 1473
AcuI	CTGAAG	2 cut(s)	660, 1296
AcvI	CACGTG	1 cut(s)	110
AcyI	GRCGYC	2 cut(s)	895, 1096
AfaI	GTAC	4 cut(s)	304, 436, 448, 744
AfiI	CCNNNNNNNGG	3 cut(s)	231, 719, 739
AflII	CTTAAG	1 cut(s)	1382
AflIII	ACRYGT	2 cut(s)	615, 1506
AgsI	TTSAA	3 cut(s)	314, 918, 1411
AhlI	ACTAGT	1 cut(s)	338
AjnI	CCWGG	1 cut(s)	345
AjuI	GAANNNNNNNTTGG	2 cut(s)	562, 594
AleI	CACNNNNGTG	1 cut(s)	1191
AloI	GAACNNNNNNTCC	6 cut(s)	589, 621, 789, 821, 827, 859
AluBI	AGCT	6 cut(s)	140, 376, 443, 638, 1049, 1280
AluI	AGCT	6 cut(s)	140, 376, 443, 638, 1049, 1280
Alw21I	GWGCWC	4 cut(s)	14, 378, 1205, 1243
Alw26I	GTCTC	3 cut(s)	487, 968, 1345
AlwI	GGATC	3 cut(s)	261, 274, 990
AlwNI	CAGNNNCTG	3 cut(s)	485, 1349, 1361
Ama87I	CYCGRG	3 cut(s)	7, 1189, 1242
AoxI	GGCC	2 cut(s)	41, 1138
ApoI	RAATTY	4 cut(s)	598, 1182, 1302, 1473
ArsI	GACNNNNNNTTYG	2 cut(s)	827, 859
Asp700I	GAANNNNTTC	3 cut(s)	727, 1128, 1615
Asp718I	GGTACC	1 cut(s)	742
AspLEI	GCGC	2 cut(s)	33, 1098
AspS9I	GGNCC	2 cut(s)	42, 240
AsuC2I	CCSGG	4 cut(s)	788, 1064, 1190, 1191
AsuHPI	GGTGA	4 cut(s)	1034, 1052, 1148, 1178
AsuII	TTCGAA	1 cut(s)	833
AvaI	CYCGRG	3 cut(s)	7, 1189, 1242
AvaII	GGWCC	1 cut(s)	240
BaeI	ACNNNNGTAYC	2 cut(s)	192, 225
BamHI	GGATCC	1 cut(s)	266
BanI	GGYRCC	2 cut(s)	742, 1095
BanII	GRGCYC	2 cut(s)	8, 378
BauI	CACGAG	1 cut(s)	119
BbrPI	CACGTG	1 cut(s)	110
Bbv12I	GWGCWC	4 cut(s)	14, 378, 1205, 1243
BccI	CCATC	4 cut(s)	43, 118, 788, 996
BceAI	ACGGC	2 cut(s)	1109, 1142
BcgI	CGANNNNNNTGC	2 cut(s)	1236, 1270
BciT130I	CCWGG	1 cut(s)	347
BciVI	GTATCC	1 cut(s)	220
BcnI	CCSGG	4 cut(s)	788, 1064, 1190, 1191
BcoDI	GTCTC	3 cut(s)	487, 968, 1345
BcuI	ACTAGT	1 cut(s)	338
BfaI	CTAG	7 cut(s)	15, 339, 420, 444, 986, 1107, 1236
BfmI	CTRYAG	2 cut(s)	438, 1176
BfoI	RGCGCY	1 cut(s)	1099
BfrI	CTTAAG	1 cut(s)	1382
BfuI	GTATCC	1 cut(s)	220
BglII	AGATCT	1 cut(s)	1109
BisI	GCNGC	1 cut(s)	114
BlsI	GCNGC	1 cut(s)	115
BmcAI	AGTACT	2 cut(s)	436, 448
Bme1390I	CCNGG	5 cut(s)	347, 788, 1064, 1190, 1191
Bme18I	GGWCC	1 cut(s)	240
BmeT110I	CYCGRG	3 cut(s)	7, 1189, 1242
BmgT120I	GGNCC	2 cut(s)	42, 240
BmiI	GGNNCC	6 cut(s)	44, 241, 268, 523, 744, 1097
BmrFI	CCNGG	5 cut(s)	347, 788, 1064, 1190, 1191
BmrI	ACTGGG	2 cut(s)	32, 473
BmsI	GCATC	5 cut(s)	66, 499, 898, 1367, 1414
BmuI	ACTGGG	2 cut(s)	32, 473
BpmI	CTGGAG	1 cut(s)	208
Bpu10I	CCTNAGC	1 cut(s)	754
Bpu14I	TTCGAA	1 cut(s)	833
BpuEI	CTTGAG	1 cut(s)	1105
BpuMI	CCSGG	4 cut(s)	788, 1064, 1190, 1191
BsaAI	YACGTR	1 cut(s)	110
BsaBI	GATNNNNATC	1 cut(s)	271
BsaHI	GRCGYC	2 cut(s)	895, 1096
BsaI	GGTCTC	1 cut(s)	1345
BsaJI	CCNNGG	3 cut(s)	346, 1189, 1395
BsaWI	WCCGGW	1 cut(s)	388
Bsc4I	CCNNNNNNNGG	3 cut(s)	231, 719, 739
Bse118I	RCCGGY	2 cut(s)	293, 1098
Bse1I	ACTGG	5 cut(s)	27, 188, 225, 479, 846
Bse8I	GATNNNNATC	1 cut(s)	271
BseBI	CCWGG	1 cut(s)	347
BseDI	CCNNGG	3 cut(s)	346, 1189, 1395
BseGI	GGATG	6 cut(s)	133, 385, 514, 913, 1303, 1426
BseJI	GATNNNNATC	1 cut(s)	271
BseLI	CCNNNNNNNGG	3 cut(s)	231, 719, 739
BseMII	CTCAG	8 cut(s)	132, 290, 557, 969, 1104, 1356, 1443, 1620
BseNI	ACTGG	5 cut(s)	27, 188, 225, 479, 846
BseRI	GAGGAG	3 cut(s)	70, 1244, 1578
BseYI	CCCAGC	1 cut(s)	1354
BsgI	GTGCAG	1 cut(s)	249
Bsh1236I	CGCG	2 cut(s)	31, 720
BshFI	GGCC	2 cut(s)	43, 1140
BshNI	GGYRCC	2 cut(s)	742, 1095
BsiHKAI	GWGCWC	4 cut(s)	14, 378, 1205, 1243
BsiHKCI	CYCGRG	3 cut(s)	7, 1189, 1242
BsiSI	CCGG	6 cut(s)	294, 389, 787, 1063, 1099, 1190
BslFI	GGGAC	2 cut(s)	1331, 1481
BslI	CCNNNNNNNGG	3 cut(s)	231, 719, 739
BsmAI	GTCTC	3 cut(s)	487, 968, 1345
BsmFI	GGGAC	2 cut(s)	1331, 1481
BsnI	GGCC	2 cut(s)	43, 1140
Bso31I	GGTCTC	1 cut(s)	1345
BsoBI	CYCGRG	3 cut(s)	7, 1189, 1242
Bsp119I	TTCGAA	1 cut(s)	833
Bsp1286I	GDGCHC	5 cut(s)	8, 14, 378, 1205, 1243
Bsp143I	GATC	7 cut(s)	130, 172, 219, 266, 982, 1036, 1109
BspACI	CCGC	6 cut(s)	55, 93, 114, 525, 720, 1159
BspANI	GGCC	2 cut(s)	43, 1140
BspCNI	CTCAG	8 cut(s)	133, 289, 556, 970, 1105, 1355, 1444, 1619
BspFNI	CGCG	2 cut(s)	31, 720
BspHI	TCATGA	3 cut(s)	409, 819, 994
BspLI	GGNNCC	6 cut(s)	44, 241, 268, 523, 744, 1097
BspPI	GGATC	3 cut(s)	261, 274, 990
BspT104I	TTCGAA	1 cut(s)	833
BspT107I	GGYRCC	2 cut(s)	742, 1095
BspTI	CTTAAG	1 cut(s)	1382
BspTNI	GGTCTC	1 cut(s)	1345
BsrBI	CCGCTC	1 cut(s)	116
BsrFI	RCCGGY	2 cut(s)	293, 1098
BsrI	ACTGG	5 cut(s)	27, 188, 225, 479, 846
BssAI	RCCGGY	2 cut(s)	293, 1098
BssECI	CCNNGG	3 cut(s)	346, 1189, 1395
BssMI	GATC	7 cut(s)	130, 172, 219, 266, 982, 1036, 1109
BssNI	GRCGYC	2 cut(s)	895, 1096
BssSI	CACGAG	1 cut(s)	119
BssT1I	CCWWGG	1 cut(s)	1395
Bst2BI	CACGAG	1 cut(s)	119
Bst2UI	CCWGG	1 cut(s)	347
Bst4CI	ACNGT	4 cut(s)	872, 1332, 1434, 1592
BstACI	GRCGYC	2 cut(s)	895, 1096
BstAFI	CTTAAG	1 cut(s)	1382
BstBAI	YACGTR	1 cut(s)	110
BstBI	TTCGAA	1 cut(s)	833
BstC8I	GCNNGC	2 cut(s)	1100, 1272
BstDEI	CTNAG	9 cut(s)	141, 276, 543, 754, 978, 1113, 1342, 1452, 1606
BstEII	GGTNACC	1 cut(s)	1058
BstENI	CCTNNNNNAGG	1 cut(s)	737
BstF5I	GGATG	6 cut(s)	133, 385, 514, 913, 1303, 1426
BstFNI	CGCG	2 cut(s)	31, 720
BstH2I	RGCGCY	1 cut(s)	1099
BstHHI	GCGC	2 cut(s)	33, 1098
BstKTI	GATC	7 cut(s)	133, 175, 222, 269, 985, 1039, 1112
BstMAI	GTCTC	3 cut(s)	487, 968, 1345
BstMBI	GATC	7 cut(s)	130, 172, 219, 266, 982, 1036, 1109
BstMWI	GCNNNNNNNGC	1 cut(s)	1443
BstNI	CCWGG	1 cut(s)	347
BstNSI	RCATGY	3 cut(s)	619, 1201, 1510
BstPI	GGTNACC	1 cut(s)	1058
BstSCI	CCNGG	5 cut(s)	345, 786, 1062, 1188, 1189
BstSFI	CTRYAG	2 cut(s)	438, 1176
BstUI	CGCG	2 cut(s)	31, 720
BstX2I	RGATCY	3 cut(s)	266, 982, 1109
BstYI	RGATCY	3 cut(s)	266, 982, 1109
BsuI	GTATCC	1 cut(s)	220
BsuRI	GGCC	2 cut(s)	43, 1140
BtgZI	GCGATG	3 cut(s)	43, 297, 1292
BtsCI	GGATG	6 cut(s)	133, 385, 514, 913, 1303, 1426
BtsIMutI	CAGTG	3 cut(s)	232, 1328, 1439
Cac8I	GCNNGC	2 cut(s)	1100, 1272
CaiI	CAGNNNCTG	3 cut(s)	485, 1349, 1361
CciI	TCATGA	3 cut(s)	409, 819, 994
CfoI	GCGC	2 cut(s)	33, 1098
Cfr10I	RCCGGY	2 cut(s)	293, 1098
Cfr13I	GGNCC	2 cut(s)	42, 240
Cfr9I	CCCGGG	1 cut(s)	1189
CseI	GACGC	3 cut(s)	554, 884, 930
Csp6I	GTAC	4 cut(s)	303, 435, 447, 743
CviQI	GTAC	4 cut(s)	303, 435, 447, 743
DdeI	CTNAG	9 cut(s)	141, 276, 543, 754, 978, 1113, 1342, 1452, 1606
DinI	GGCGCC	1 cut(s)	1097
DpnI	GATC	7 cut(s)	132, 174, 221, 268, 984, 1038, 1111
DpnII	GATC	7 cut(s)	130, 172, 219, 266, 982, 1036, 1109
DraI	TTTAAA	2 cut(s)	457, 1584
DrdI	GACNNNNNNGTC	1 cut(s)	1231
DseDI	GACNNNNNNGTC	1 cut(s)	1231
Ecl136II	GAGCTC	1 cut(s)	376
Eco130I	CCWWGG	1 cut(s)	1395
Eco24I	GRGCYC	2 cut(s)	8, 378
Eco31I	GGTCTC	1 cut(s)	1345
Eco47I	GGWCC	1 cut(s)	240
Eco53kI	GAGCTC	1 cut(s)	376
Eco57I	CTGAAG	2 cut(s)	660, 1296
Eco72I	CACGTG	1 cut(s)	110
Eco88I	CYCGRG	3 cut(s)	7, 1189, 1242
Eco91I	GGTNACC	1 cut(s)	1058
EcoICRI	GAGCTC	1 cut(s)	376
EcoNI	CCTNNNNNAGG	1 cut(s)	737
EcoO65I	GGTNACC	1 cut(s)	1058
EcoRI	GAATTC	2 cut(s)	598, 1182
EcoRII	CCWGG	1 cut(s)	345
EcoT14I	CCWWGG	1 cut(s)	1395
EcoT22I	ATGCAT	1 cut(s)	913
EcoT38I	GRGCYC	2 cut(s)	8, 378
EgeI	GGCGCC	1 cut(s)	1097
EheI	GGCGCC	1 cut(s)	1097
ErhI	CCWWGG	1 cut(s)	1395
FalI	AAGNNNNNCTT	2 cut(s)	562, 594
FaqI	GGGAC	2 cut(s)	1331, 1481
Fnu4HI	GCNGC	1 cut(s)	114
FokI	GGATG	6 cut(s)	120, 372, 521, 920, 1310, 1433
FriOI	GRGCYC	2 cut(s)	8, 378
Fsp4HI	GCNGC	1 cut(s)	114
FspBI	CTAG	7 cut(s)	15, 339, 420, 444, 986, 1107, 1236
GlaI	GCGC	2 cut(s)	32, 1097
GluI	GCNGC	1 cut(s)	114
GsaI	CCCAGC	1 cut(s)	1358
GsuI	CTGGAG	1 cut(s)	208
HaeII	RGCGCY	1 cut(s)	1099
HaeIII	GGCC	2 cut(s)	43, 1140
HapII	CCGG	6 cut(s)	294, 389, 787, 1063, 1099, 1190
HgaI	GACGC	3 cut(s)	554, 884, 930
HhaI	GCGC	2 cut(s)	33, 1098
Hin1I	GRCGYC	2 cut(s)	895, 1096
Hin6I	GCGC	2 cut(s)	31, 1096
HinP1I	GCGC	2 cut(s)	31, 1096
HincII	GTYRAC	1 cut(s)	1402
HindII	GTYRAC	1 cut(s)	1402
HpaII	CCGG	6 cut(s)	294, 389, 787, 1063, 1099, 1190
HphI	GGTGA	4 cut(s)	1034, 1052, 1148, 1178
Hpy166II	GTNNAC	4 cut(s)	243, 1091, 1402, 1553
Hpy188I	TCNGA	5 cut(s)	195, 279, 610, 694, 1114
Hpy8I	GTNNAC	4 cut(s)	243, 1091, 1402, 1553
HpyAV	CCTTC	8 cut(s)	256, 311, 743, 756, 876, 927, 1457, 1571
HpyCH4III	ACNGT	4 cut(s)	872, 1332, 1434, 1592
HpyCH4IV	ACGT	2 cut(s)	109, 207
HpyCH4V	TGCA	3 cut(s)	230, 512, 911
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1443
HpyF3I	CTNAG	9 cut(s)	141, 276, 543, 754, 978, 1113, 1342, 1452, 1606
HpySE526I	ACGT	2 cut(s)	109, 207
Hsp92I	GRCGYC	2 cut(s)	895, 1096
HspAI	GCGC	2 cut(s)	31, 1096
KasI	GGCGCC	1 cut(s)	1095
KpnI	GGTACC	1 cut(s)	746
KroI	GCCGGC	1 cut(s)	1098
KroNI	GCCGGC	1 cut(s)	1100
Kzo9I	GATC	7 cut(s)	130, 172, 219, 266, 982, 1036, 1109
LmnI	GCTCC	4 cut(s)	373, 527, 1046, 1208
LweI	GCATC	5 cut(s)	66, 499, 898, 1367, 1414
MaeI	CTAG	7 cut(s)	15, 339, 420, 444, 986, 1107, 1236
MaeII	ACGT	2 cut(s)	109, 207
MaeIII	GTNAC	5 cut(s)	341, 866, 1058, 1320, 1388
MalI	GATC	7 cut(s)	132, 174, 221, 268, 984, 1038, 1111
MbiI	CCGCTC	1 cut(s)	116
MboI	GATC	7 cut(s)	130, 172, 219, 266, 982, 1036, 1109
MboII	GAAGA	7 cut(s)	140, 326, 462, 570, 803, 822, 1608
MflI	RGATCY	3 cut(s)	266, 982, 1109
MhlI	GDGCHC	5 cut(s)	8, 14, 378, 1205, 1243
MluCI	AATT	8 cut(s)	166, 261, 598, 1182, 1260, 1302, 1406, 1473
Mly113I	GGCGCC	1 cut(s)	1096
MlyI	GAGTC	3 cut(s)	884, 1241, 1396
MmeI	TCCRAC	2 cut(s)	795, 974
Mph1103I	ATGCAT	1 cut(s)	913
MroNI	GCCGGC	1 cut(s)	1098
MroXI	GAANNNNTTC	3 cut(s)	727, 1128, 1615
MseI	TTAA	5 cut(s)	323, 456, 1383, 1530, 1583
MslI	CAYNNNNRTG	3 cut(s)	813, 1191, 1419
MspA1I	CMGCKG	1 cut(s)	140
MspCI	CTTAAG	1 cut(s)	1382
MspI	CCGG	6 cut(s)	294, 389, 787, 1063, 1099, 1190
MspR9I	CCNGG	5 cut(s)	347, 788, 1064, 1190, 1191
MssI	GTTTAAAC	1 cut(s)	1584
MvaI	CCWGG	1 cut(s)	347
MvnI	CGCG	2 cut(s)	31, 720
MwoI	GCNNNNNNNGC	1 cut(s)	1443
NaeI	GCCGGC	1 cut(s)	1100
NarI	GGCGCC	1 cut(s)	1096
NciI	CCSGG	4 cut(s)	788, 1064, 1190, 1191
NdeII	GATC	7 cut(s)	130, 172, 219, 266, 982, 1036, 1109
NgoMIV	GCCGGC	1 cut(s)	1098
NlaIV	GGNNCC	6 cut(s)	44, 241, 268, 523, 744, 1097
NmeAIII	GCCGAG	1 cut(s)	19
NmuCI	GTSAC	3 cut(s)	1058, 1320, 1388
NsiI	ATGCAT	1 cut(s)	913
NspI	RCATGY	3 cut(s)	619, 1201, 1510
NspV	TTCGAA	1 cut(s)	833
OliI	CACNNNNGTG	1 cut(s)	1191
PaeR7I	CTCGAG	1 cut(s)	7
PagI	TCATGA	3 cut(s)	409, 819, 994
PciI	ACATGT	2 cut(s)	615, 1506
PcsI	WCGNNNNNNNCGW	1 cut(s)	1593
PdiI	GCCGGC	1 cut(s)	1100
PdmI	GAANNNNTTC	3 cut(s)	727, 1128, 1615
PfeI	GAWTC	8 cut(s)	416, 628, 677, 728, 759, 944, 1052, 1370
PkrI	GCNGC	1 cut(s)	115
PleI	GAGTC	3 cut(s)	883, 1240, 1395
PluTI	GGCGCC	1 cut(s)	1099
PmaCI	CACGTG	1 cut(s)	110
PmeI	GTTTAAAC	1 cut(s)	1584
PmlI	CACGTG	1 cut(s)	110
PpsI	GAGTC	3 cut(s)	883, 1240, 1395
Ppu21I	YACGTR	1 cut(s)	110
PscI	ACATGT	2 cut(s)	615, 1506
Psp124BI	GAGCTC	1 cut(s)	378
Psp6I	CCWGG	1 cut(s)	345
PspCI	CACGTG	1 cut(s)	110
PspEI	GGTNACC	1 cut(s)	1058
PspFI	CCCAGC	1 cut(s)	1354
PspGI	CCWGG	1 cut(s)	345
PspN4I	GGNNCC	6 cut(s)	44, 241, 268, 523, 744, 1097
PspPI	GGNCC	2 cut(s)	42, 240
PspXI	VCTCGAGB	1 cut(s)	7
PstNI	CAGNNNCTG	3 cut(s)	485, 1349, 1361
PsuI	RGATCY	3 cut(s)	266, 982, 1109
PvuII	CAGCTG	1 cut(s)	140
RsaI	GTAC	4 cut(s)	304, 436, 448, 744
RsaNI	GTAC	4 cut(s)	303, 435, 447, 743
RseI	CAYNNNNRTG	3 cut(s)	813, 1191, 1419
SacI	GAGCTC	1 cut(s)	378
SaqAI	TTAA	5 cut(s)	323, 456, 1383, 1530, 1583
SatI	GCNGC	1 cut(s)	114
Sau3AI	GATC	7 cut(s)	130, 172, 219, 266, 982, 1036, 1109
Sau96I	GGNCC	2 cut(s)	42, 240
ScaI	AGTACT	2 cut(s)	436, 448
SchI	GAGTC	3 cut(s)	884, 1241, 1396
ScrFI	CCNGG	5 cut(s)	347, 788, 1064, 1190, 1191
SduI	GDGCHC	5 cut(s)	8, 14, 378, 1205, 1243
SfaNI	GCATC	5 cut(s)	66, 499, 898, 1367, 1414
SfcI	CTRYAG	2 cut(s)	438, 1176
SfoI	GGCGCC	1 cut(s)	1097
Sfr274I	CTCGAG	1 cut(s)	7
SfuI	TTCGAA	1 cut(s)	833
SinI	GGWCC	1 cut(s)	240
SlaI	CTCGAG	1 cut(s)	7
SmaI	CCCGGG	1 cut(s)	1191
SmiMI	CAYNNNNRTG	3 cut(s)	813, 1191, 1419
SmlI	CTYRAG	3 cut(s)	7, 1084, 1382
SmoI	CTYRAG	3 cut(s)	7, 1084, 1382
SpeI	ACTAGT	1 cut(s)	338
Sse9I	AATT	8 cut(s)	166, 261, 598, 1182, 1260, 1302, 1406, 1473
SsiI	CCGC	6 cut(s)	55, 93, 114, 525, 720, 1159
SspDI	GGCGCC	1 cut(s)	1095
SspMI	CTAG	7 cut(s)	15, 339, 420, 444, 986, 1107, 1236
SstI	GAGCTC	1 cut(s)	378
StyD4I	CCNGG	5 cut(s)	345, 786, 1062, 1188, 1189
StyI	CCWWGG	1 cut(s)	1395
TaaI	ACNGT	4 cut(s)	872, 1332, 1434, 1592
TaiI	ACGT	2 cut(s)	112, 210
TaqI	TCGA	7 cut(s)	8, 833, 1039, 1256, 1287, 1477, 1561
TasI	AATT	8 cut(s)	166, 261, 598, 1182, 1260, 1302, 1406, 1473
TatI	WGTACW	2 cut(s)	434, 446
TauI	GCSGC	1 cut(s)	116
TfiI	GAWTC	8 cut(s)	416, 628, 677, 728, 759, 944, 1052, 1370
Tru1I	TTAA	5 cut(s)	323, 456, 1383, 1530, 1583
Tru9I	TTAA	5 cut(s)	323, 456, 1383, 1530, 1583
TscAI	CASTG	3 cut(s)	232, 1335, 1439
TseFI	GTSAC	3 cut(s)	1058, 1320, 1388
Tsp45I	GTSAC	3 cut(s)	1058, 1320, 1388
TspDTI	ATGAA	7 cut(s)	429, 674, 797, 983, 1203, 1295, 1314
TspGWI	ACGGA	2 cut(s)	610, 1585
TspMI	CCCGGG	1 cut(s)	1189
TspRI	CASTG	3 cut(s)	232, 1335, 1439
Vha464I	CTTAAG	1 cut(s)	1382
VpaK11BI	GGWCC	1 cut(s)	240
XagI	CCTNNNNNAGG	1 cut(s)	737
XapI	RAATTY	4 cut(s)	598, 1182, 1302, 1473
XbaI	TCTAGA	1 cut(s)	1106
XceI	RCATGY	3 cut(s)	619, 1201, 1510
XhoI	CTCGAG	1 cut(s)	7
XmaI	CCCGGG	1 cut(s)	1189
XmnI	GAANNNNTTC	3 cut(s)	727, 1128, 1615
XspI	CTAG	7 cut(s)	15, 339, 420, 444, 986, 1107, 1236
ZrmI	AGTACT	2 cut(s)	436, 448
Zsp2I	ATGCAT	1 cut(s)	913

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.