Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0035211.1

Orthogroup ID

OG0010512

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 679

Gene Structure 678 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0035211.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

tccagctgagtgtcttgtgagatacgcagagaattgtgatcggggtaaaaatccagttcagaactccacagacgtatcctcgttgatctccagtgcaggggcagggtccaccttccctaatactgaaattggatcctcatctcagagcgttgttccagccggtcagggtacttattttgaagaaggtttaagaagtcttgacacgagtaaccaggggaagtgcttgtccagaagtaaggagctcatttctcatccggtaagtgctggttgtaatcatgatgaatctagtagggataatagtactacagctagtacttcgtttaaagaacaacaatcttgccacccaatctctgtgaatagttcggctaacatggatgcagtcaatggctccgcagacaagaatgtatctcaggcatgtcctgtggttatgcgtccaagtagttcttctccacaagggattgggaattcccattctgatgacatgtccgttgagaatcatgtagctgaagtaatggatgttcataatactaatgctgatactgattctgttcatgtttctgatataccattaccttttccctcacgcggaaatgattcctttccctcacgcggaaatgattcccttcgggaggtaccttctggcttaggattccttgtgtccaacagggaacaaagccg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000578 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007275 GO:0007389 GO:0008134 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009790 GO:0009798 GO:0009880 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0032501 GO:0032502 GO:0036211 GO:0042802 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044464 GO:0048856 GO:0051603 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_11 zf-RING_2

Protein Analysis

226

Amino Acids

23.82

Weight (kDa)

4.95

Isoelectric Point (pI)

64.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010512)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g01770
malus_domestica	MD02G1013400.v1.1 MD15G1160200.v1.1
prunus_persica	Prupe.7G255200_v2.0.a1 Prupe.7G255200_v2.0.a1 Prupe.7G255200_v2.0.a1
pyrus_communis	pycom02g01250 pycom15g14410
rosa_chinensis	RchiOBHm_Chr2g0086731
rosa_laevigata	RLG00000015786
rosa_multiflora	Rmu_sc0000335.1_g000009 Rmu_sc0004626.1_g000001 Rmu_sc0030160.1_g000001 Rmu_sc0035211.1_g000001
rosa_roxburghii	Rroxscaffold_2G00154240
rosa_rugosa	Rorug01G0469200
rosa_samantha	Rh2AG021300 Rh2BG021200 Rh2CG022100 Rh2DG021900
rosa_wichuraiana	Rw2G001730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	632
AccB1I	GGYRCC	1 cut(s)	632
AccII	CGCG	2 cut(s)	586, 610
AciI	CCGC	3 cut(s)	391, 586, 610
AclWI	GGATC	2 cut(s)	127, 140
AcsI	RAATTY	1 cut(s)	464
AcuI	CTGAAG	1 cut(s)	526
AfaI	GTAC	4 cut(s)	170, 302, 314, 634
AfiI	CCNNNNNNNGG	4 cut(s)	97, 585, 609, 629
AflIII	ACRYGT	1 cut(s)	481
AgsI	TTSAA	1 cut(s)	180
AjnI	CCWGG	1 cut(s)	211
AjuI	GAANNNNNNNTTGG	2 cut(s)	428, 460
AluBI	AGCT	4 cut(s)	6, 242, 309, 504
AluI	AGCT	4 cut(s)	6, 242, 309, 504
Alw21I	GWGCWC	1 cut(s)	244
AlwI	GGATC	2 cut(s)	127, 140
ApoI	RAATTY	1 cut(s)	464
Asp700I	GAANNNNTTC	2 cut(s)	593, 617
Asp718I	GGTACC	1 cut(s)	632
AspS9I	GGNCC	1 cut(s)	106
AvaII	GGWCC	1 cut(s)	106
BaeI	ACNNNNGTAYC	2 cut(s)	58, 91
BamHI	GGATCC	1 cut(s)	132
BanI	GGYRCC	1 cut(s)	632
BanII	GRGCYC	1 cut(s)	244
BauI	CACGAG	1 cut(s)	203
Bbv12I	GWGCWC	1 cut(s)	244
BciT130I	CCWGG	1 cut(s)	213
BciVI	GTATCC	1 cut(s)	86
BfaI	CTAG	2 cut(s)	286, 310
BfmI	CTRYAG	1 cut(s)	304
BfuI	GTATCC	1 cut(s)	86
BmcAI	AGTACT	2 cut(s)	302, 314
Bme1390I	CCNGG	1 cut(s)	213
Bme18I	GGWCC	1 cut(s)	106
BmgT120I	GGNCC	1 cut(s)	106
BmiI	GGNNCC	4 cut(s)	107, 134, 389, 634
BmrFI	CCNGG	1 cut(s)	213
BmsI	GCATC	1 cut(s)	365
BpmI	CTGGAG	1 cut(s)	74
Bpu10I	CCTNAGC	1 cut(s)	644
BsaBI	GATNNNNATC	1 cut(s)	137
BsaJI	CCNNGG	1 cut(s)	212
BsaWI	WCCGGW	1 cut(s)	254
Bsc4I	CCNNNNNNNGG	4 cut(s)	97, 585, 609, 629
Bse118I	RCCGGY	1 cut(s)	159
Bse1I	ACTGG	2 cut(s)	54, 91
Bse8I	GATNNNNATC	1 cut(s)	137
BseBI	CCWGG	1 cut(s)	213
BseDI	CCNNGG	1 cut(s)	212
BseGI	GGATG	3 cut(s)	251, 380, 521
BseJI	GATNNNNATC	1 cut(s)	137
BseLI	CCNNNNNNNGG	4 cut(s)	97, 585, 609, 629
BseMII	CTCAG	2 cut(s)	156, 423
BseNI	ACTGG	2 cut(s)	54, 91
BsgI	GTGCAG	1 cut(s)	115
Bsh1236I	CGCG	2 cut(s)	586, 610
BshNI	GGYRCC	1 cut(s)	632
BsiHKAI	GWGCWC	1 cut(s)	244
BsiSI	CCGG	2 cut(s)	160, 255
BslI	CCNNNNNNNGG	4 cut(s)	97, 585, 609, 629
Bsp1286I	GDGCHC	1 cut(s)	244
Bsp143I	GATC	3 cut(s)	38, 85, 132
BspACI	CCGC	3 cut(s)	391, 586, 610
BspCNI	CTCAG	2 cut(s)	155, 422
BspFNI	CGCG	2 cut(s)	586, 610
BspHI	TCATGA	1 cut(s)	275
BspLI	GGNNCC	4 cut(s)	107, 134, 389, 634
BspPI	GGATC	2 cut(s)	127, 140
BspT107I	GGYRCC	1 cut(s)	632
BsrFI	RCCGGY	1 cut(s)	159
BsrI	ACTGG	2 cut(s)	54, 91
BssAI	RCCGGY	1 cut(s)	159
BssECI	CCNNGG	1 cut(s)	212
BssMI	GATC	3 cut(s)	38, 85, 132
BssSI	CACGAG	1 cut(s)	203
Bst2BI	CACGAG	1 cut(s)	203
Bst2UI	CCWGG	1 cut(s)	213
BstDEI	CTNAG	4 cut(s)	7, 142, 409, 644
BstENI	CCTNNNNNAGG	1 cut(s)	627
BstF5I	GGATG	3 cut(s)	251, 380, 521
BstFNI	CGCG	2 cut(s)	586, 610
BstKTI	GATC	3 cut(s)	41, 88, 135
BstMBI	GATC	3 cut(s)	38, 85, 132
BstNI	CCWGG	1 cut(s)	213
BstNSI	RCATGY	2 cut(s)	418, 485
BstSCI	CCNGG	1 cut(s)	211
BstSFI	CTRYAG	1 cut(s)	304
BstUI	CGCG	2 cut(s)	586, 610
BstX2I	RGATCY	1 cut(s)	132
BstYI	RGATCY	1 cut(s)	132
BsuI	GTATCC	1 cut(s)	86
BtsCI	GGATG	3 cut(s)	251, 380, 521
BtsIMutI	CAGTG	1 cut(s)	98
CciI	TCATGA	1 cut(s)	275
Cfr10I	RCCGGY	1 cut(s)	159
Cfr13I	GGNCC	1 cut(s)	106
CseI	GACGC	1 cut(s)	420
Csp6I	GTAC	4 cut(s)	169, 301, 313, 633
CviAII	CATG	6 cut(s)	276, 371, 415, 482, 498, 552
CviJI	RGCY	9 cut(s)	6, 159, 242, 309, 366, 388, 504, 643, 676
CviKI_1	RGCY	9 cut(s)	6, 159, 242, 309, 366, 388, 504, 643, 676
CviQI	GTAC	4 cut(s)	169, 301, 313, 633
DdeI	CTNAG	4 cut(s)	7, 142, 409, 644
DpnI	GATC	3 cut(s)	40, 87, 134
DpnII	GATC	3 cut(s)	38, 85, 132
DraI	TTTAAA	1 cut(s)	323
Ecl136II	GAGCTC	1 cut(s)	242
Eco24I	GRGCYC	1 cut(s)	244
Eco47I	GGWCC	1 cut(s)	106
Eco53kI	GAGCTC	1 cut(s)	242
Eco57I	CTGAAG	1 cut(s)	526
EcoICRI	GAGCTC	1 cut(s)	242
EcoNI	CCTNNNNNAGG	1 cut(s)	627
EcoRI	GAATTC	1 cut(s)	464
EcoRII	CCWGG	1 cut(s)	211
EcoT38I	GRGCYC	1 cut(s)	244
FaeI	CATG	6 cut(s)	279, 374, 418, 485, 501, 555
FaiI	YATR	9 cut(s)	277, 372, 416, 429, 483, 499, 523, 553, 564
FalI	AAGNNNNNCTT	2 cut(s)	428, 460
FatI	CATG	6 cut(s)	275, 370, 414, 481, 497, 551
FokI	GGATG	3 cut(s)	238, 387, 528
FriOI	GRGCYC	1 cut(s)	244
FspBI	CTAG	2 cut(s)	286, 310
GsuI	CTGGAG	1 cut(s)	74
HapII	CCGG	2 cut(s)	160, 255
HgaI	GACGC	1 cut(s)	420
Hin1II	CATG	6 cut(s)	279, 374, 418, 485, 501, 555
HinfI	GANTC	6 cut(s)	282, 494, 543, 594, 618, 649
HpaII	CCGG	2 cut(s)	160, 255
Hpy166II	GTNNAC	1 cut(s)	109
Hpy188I	TCNGA	4 cut(s)	61, 145, 476, 560
Hpy188III	TCNNGA	4 cut(s)	198, 229, 276, 627
Hpy8I	GTNNAC	1 cut(s)	109
HpyAV	CCTTC	4 cut(s)	122, 177, 633, 646
HpyCH4IV	ACGT	1 cut(s)	73
HpyCH4V	TGCA	2 cut(s)	96, 378
HpyF3I	CTNAG	4 cut(s)	7, 142, 409, 644
HpySE526I	ACGT	1 cut(s)	73
Hsp92II	CATG	6 cut(s)	279, 374, 418, 485, 501, 555
KpnI	GGTACC	1 cut(s)	636
Kzo9I	GATC	3 cut(s)	38, 85, 132
LmnI	GCTCC	2 cut(s)	239, 393
LweI	GCATC	1 cut(s)	365
MaeI	CTAG	2 cut(s)	286, 310
MaeII	ACGT	1 cut(s)	73
MaeIII	GTNAC	1 cut(s)	207
MalI	GATC	3 cut(s)	40, 87, 134
MboI	GATC	3 cut(s)	38, 85, 132
MboII	GAAGA	2 cut(s)	192, 436
MflI	RGATCY	1 cut(s)	132
MhlI	GDGCHC	1 cut(s)	244
MluCI	AATT	3 cut(s)	32, 127, 464
MnlI	CCTC	5 cut(s)	89, 146, 590, 614, 623
MroXI	GAANNNNTTC	2 cut(s)	593, 617
MseI	TTAA	2 cut(s)	189, 322
MslI	CAYNNNNRTG	1 cut(s)	475
MspA1I	CMGCKG	1 cut(s)	6
MspI	CCGG	2 cut(s)	160, 255
MspR9I	CCNGG	1 cut(s)	213
MvaI	CCWGG	1 cut(s)	213
MvnI	CGCG	2 cut(s)	586, 610
NdeII	GATC	3 cut(s)	38, 85, 132
NlaIII	CATG	6 cut(s)	279, 374, 418, 485, 501, 555
NlaIV	GGNNCC	4 cut(s)	107, 134, 389, 634
NspI	RCATGY	2 cut(s)	418, 485
PagI	TCATGA	1 cut(s)	275
PciI	ACATGT	1 cut(s)	481
PdmI	GAANNNNTTC	2 cut(s)	593, 617
PfeI	GAWTC	6 cut(s)	282, 494, 543, 594, 618, 649
PscI	ACATGT	1 cut(s)	481
Psp124BI	GAGCTC	1 cut(s)	244
Psp6I	CCWGG	1 cut(s)	211
PspGI	CCWGG	1 cut(s)	211
PspN4I	GGNNCC	4 cut(s)	107, 134, 389, 634
PspPI	GGNCC	1 cut(s)	106
PsrI	GAACNNNNNNTAC	2 cut(s)	502, 534
PsuI	RGATCY	1 cut(s)	132
PvuII	CAGCTG	1 cut(s)	6
RsaI	GTAC	4 cut(s)	170, 302, 314, 634
RsaNI	GTAC	4 cut(s)	169, 301, 313, 633
RseI	CAYNNNNRTG	1 cut(s)	475
SacI	GAGCTC	1 cut(s)	244
SaqAI	TTAA	2 cut(s)	189, 322
Sau3AI	GATC	3 cut(s)	38, 85, 132
Sau96I	GGNCC	1 cut(s)	106
ScaI	AGTACT	2 cut(s)	302, 314
ScrFI	CCNGG	1 cut(s)	213
SduI	GDGCHC	1 cut(s)	244
SfaNI	GCATC	1 cut(s)	365
SfcI	CTRYAG	1 cut(s)	304
SinI	GGWCC	1 cut(s)	106
SmiMI	CAYNNNNRTG	1 cut(s)	475
Sse9I	AATT	3 cut(s)	32, 127, 464
SsiI	CCGC	3 cut(s)	391, 586, 610
SspMI	CTAG	2 cut(s)	286, 310
SstI	GAGCTC	1 cut(s)	244
StyD4I	CCNGG	1 cut(s)	211
TaiI	ACGT	1 cut(s)	76
TasI	AATT	3 cut(s)	32, 127, 464
TatI	WGTACW	2 cut(s)	300, 312
TfiI	GAWTC	6 cut(s)	282, 494, 543, 594, 618, 649
Tru1I	TTAA	2 cut(s)	189, 322
Tru9I	TTAA	2 cut(s)	189, 322
TscAI	CASTG	1 cut(s)	98
TspDTI	ATGAA	3 cut(s)	295, 510, 540
TspGWI	ACGGA	1 cut(s)	476
TspRI	CASTG	1 cut(s)	98
VpaK11BI	GGWCC	1 cut(s)	106
XagI	CCTNNNNNAGG	1 cut(s)	627
XapI	RAATTY	1 cut(s)	464
XceI	RCATGY	2 cut(s)	418, 485
XmnI	GAANNNNTTC	2 cut(s)	593, 617
XspI	CTAG	2 cut(s)	286, 310
ZrmI	AGTACT	2 cut(s)	302, 314

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.