Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000335.1

Orthogroup ID

OG0010512

Physical Location & Seq

Genomic Coordinates Reverse (-)

49429 .. 50274

Gene Structure 846 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000335.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

atggctttttattcaaagattcccacagacggcgccaatgttaatgctttagattcgggcgatagcccaagtctttggttaacgctggtccgatgggcggaccgctactcaaatgacgtgatgacttccgctacctgtcaagtgaaatacaaagggcgtcagagggagactgagctgggcggtcttctcttctccgatgccaaagttagtcaatgtatttatgttgacagaataacattcccagcttctggagtttctgatgctaacttggtgcgacgggtcagcggtgatctgggggtgagccgaggctcaggcggtagcctgtttgattgtgtttccgtaggtcacacagttggcggtagctgttcttctccacaagggattgggagttcccattctgatgacatgtcccttgagaatcatgtagctgaagtaatggttgtccataatagtaatgttgatactgattctgttcatgtttctgatataccattaccttttccctcacgcggaaatgattcccttcgggaggtaccttgtggcttaggattacttgtgtccaacagggaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000578 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007275 GO:0007389 GO:0008134 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009790 GO:0009798 GO:0009880 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0032501 GO:0032502 GO:0036211 GO:0042802 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044464 GO:0048856 GO:0051603 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_11 zf-RING_2

Protein Analysis

190

Amino Acids

20.2

Weight (kDa)

5.12

Isoelectric Point (pI)

42.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010512)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g01770
malus_domestica	MD02G1013400.v1.1 MD15G1160200.v1.1
prunus_persica	Prupe.7G255200_v2.0.a1 Prupe.7G255200_v2.0.a1 Prupe.7G255200_v2.0.a1
pyrus_communis	pycom02g01250 pycom15g14410
rosa_chinensis	RchiOBHm_Chr2g0086731
rosa_laevigata	RLG00000015786
rosa_multiflora	Rmu_sc0000335.1_g000009 Rmu_sc0004626.1_g000001 Rmu_sc0030160.1_g000001 Rmu_sc0035211.1_g000001
rosa_roxburghii	Rroxscaffold_2G00154240
rosa_rugosa	Rorug01G0469200
rosa_samantha	Rh2AG021300 Rh2BG021200 Rh2CG022100 Rh2DG021900
rosa_wichuraiana	Rw2G001730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	532
AccB1I	GGYRCC	2 cut(s)	32, 532
AccB7I	CCANNNNNTGG	1 cut(s)	248
AccII	CGCG	1 cut(s)	510
AciI	CCGC	8 cut(s)	98, 103, 129, 180, 285, 315, 357, 510
AcuI	CTGAAG	1 cut(s)	450
AcyI	GRCGYC	2 cut(s)	33, 157
AfaI	GTAC	1 cut(s)	534
AfiI	CCNNNNNNNGG	5 cut(s)	29, 97, 248, 509, 529
AflIII	ACRYGT	1 cut(s)	405
AgsI	TTSAA	1 cut(s)	15
AjiI	CACGTC	1 cut(s)	118
AloI	GAACNNNNNNTCC	2 cut(s)	373, 405
AluBI	AGCT	4 cut(s)	175, 245, 363, 428
AluI	AGCT	4 cut(s)	175, 245, 363, 428
Alw26I	GTCTC	1 cut(s)	161
AlwNI	CAGNNNCTG	1 cut(s)	248
Asp700I	GAANNNNTTC	1 cut(s)	517
Asp718I	GGTACC	1 cut(s)	532
AspLEI	GCGC	1 cut(s)	35
AspS9I	GGNCC	2 cut(s)	88, 100
AsuHPI	GGTGA	2 cut(s)	299, 310
AvaII	GGWCC	2 cut(s)	88, 100
BanI	GGYRCC	2 cut(s)	32, 532
BarI	GAAGNNNNNNTAC	2 cut(s)	352, 384
BbsI	GAAGAC	1 cut(s)	176
BccI	CCATC	1 cut(s)	87
BceAI	ACGGC	1 cut(s)	46
BcoDI	GTCTC	1 cut(s)	161
BfoI	RGCGCY	1 cut(s)	36
Bme18I	GGWCC	2 cut(s)	88, 100
BmgBI	CACGTC	1 cut(s)	118
BmgT120I	GGNCC	2 cut(s)	88, 100
BmiI	GGNNCC	2 cut(s)	34, 534
BmsI	GCATC	2 cut(s)	187, 250
BpiI	GAAGAC	1 cut(s)	176
BpmI	CTGGAG	1 cut(s)	270
Bpu10I	CCTNAGC	2 cut(s)	310, 544
BpuEI	CTTGAG	1 cut(s)	434
BsaHI	GRCGYC	2 cut(s)	33, 157
BsaJI	CCNNGG	1 cut(s)	304
Bsc4I	CCNNNNNNNGG	5 cut(s)	29, 97, 248, 509, 529
BseDI	CCNNGG	1 cut(s)	304
BseLI	CCNNNNNNNGG	5 cut(s)	29, 97, 248, 509, 529
BseMII	CTCAG	2 cut(s)	162, 324
BseYI	CCCAGC	2 cut(s)	175, 241
Bsh1236I	CGCG	1 cut(s)	510
BshNI	GGYRCC	2 cut(s)	32, 532
BslFI	GGGAC	1 cut(s)	394
BslI	CCNNNNNNNGG	5 cut(s)	29, 97, 248, 509, 529
BsmAI	GTCTC	1 cut(s)	161
BsmFI	GGGAC	1 cut(s)	394
Bsp143I	GATC	1 cut(s)	289
BspACI	CCGC	8 cut(s)	98, 103, 129, 180, 285, 315, 357, 510
BspCNI	CTCAG	2 cut(s)	163, 323
BspFNI	CGCG	1 cut(s)	510
BspLI	GGNNCC	2 cut(s)	34, 534
BspT107I	GGYRCC	2 cut(s)	32, 532
BssECI	CCNNGG	1 cut(s)	304
BssMI	GATC	1 cut(s)	289
BssNI	GRCGYC	2 cut(s)	33, 157
Bst4CI	ACNGT	1 cut(s)	352
Bst6I	CTCTTC	1 cut(s)	194
BstACI	GRCGYC	2 cut(s)	33, 157
BstDEI	CTNAG	3 cut(s)	171, 310, 544
BstENI	CCTNNNNNAGG	1 cut(s)	527
BstFNI	CGCG	1 cut(s)	510
BstH2I	RGCGCY	1 cut(s)	36
BstHHI	GCGC	1 cut(s)	35
BstKTI	GATC	1 cut(s)	292
BstMAI	GTCTC	1 cut(s)	161
BstMBI	GATC	1 cut(s)	289
BstNSI	RCATGY	1 cut(s)	409
BstUI	CGCG	1 cut(s)	510
BstV2I	GAAGAC	1 cut(s)	176
BstXI	CCANNNNNNTGG	1 cut(s)	75
BtrI	CACGTC	1 cut(s)	118
CaiI	CAGNNNCTG	1 cut(s)	248
CfoI	GCGC	1 cut(s)	35
Cfr13I	GGNCC	2 cut(s)	88, 100
CpoI	CGGWCCG	1 cut(s)	100
CseI	GACGC	1 cut(s)	146
Csp6I	GTAC	1 cut(s)	533
CspI	CGGWCCG	1 cut(s)	100
CviAII	CATG	3 cut(s)	406, 422, 476
CviQI	GTAC	1 cut(s)	533
DdeI	CTNAG	3 cut(s)	171, 310, 544
DinI	GGCGCC	1 cut(s)	34
DpnI	GATC	1 cut(s)	291
DpnII	GATC	1 cut(s)	289
Eam1104I	CTCTTC	1 cut(s)	194
EarI	CTCTTC	1 cut(s)	194
EciI	GGCGGA	1 cut(s)	113
Eco47I	GGWCC	2 cut(s)	88, 100
Eco57I	CTGAAG	1 cut(s)	450
EcoNI	CCTNNNNNAGG	1 cut(s)	527
EgeI	GGCGCC	1 cut(s)	34
EheI	GGCGCC	1 cut(s)	34
FaeI	CATG	3 cut(s)	409, 425, 479
FaiI	YATR	6 cut(s)	222, 407, 423, 447, 477, 488
FaqI	GGGAC	1 cut(s)	394
FatI	CATG	3 cut(s)	405, 421, 475
GlaI	GCGC	1 cut(s)	34
GsaI	CCCAGC	2 cut(s)	179, 245
GsuI	CTGGAG	1 cut(s)	270
HaeII	RGCGCY	1 cut(s)	36
HgaI	GACGC	1 cut(s)	146
HhaI	GCGC	1 cut(s)	35
Hin1I	GRCGYC	2 cut(s)	33, 157
Hin1II	CATG	3 cut(s)	409, 425, 479
Hin6I	GCGC	1 cut(s)	33
HinP1I	GCGC	1 cut(s)	33
HincII	GTYRAC	2 cut(s)	81, 226
HindII	GTYRAC	2 cut(s)	81, 226
HinfI	GANTC	5 cut(s)	19, 53, 418, 467, 518
HpaI	GTTAAC	1 cut(s)	81
HphI	GGTGA	2 cut(s)	299, 310
Hpy166II	GTNNAC	2 cut(s)	81, 226
Hpy188I	TCNGA	6 cut(s)	92, 162, 196, 259, 400, 484
Hpy188III	TCNNGA	2 cut(s)	249, 527
Hpy8I	GTNNAC	2 cut(s)	81, 226
Hpy99I	CGWCG	1 cut(s)	279
HpyAV	CCTTC	1 cut(s)	533
HpyCH4III	ACNGT	1 cut(s)	352
HpyCH4IV	ACGT	1 cut(s)	117
HpyF3I	CTNAG	3 cut(s)	171, 310, 544
HpySE526I	ACGT	1 cut(s)	117
Hsp92I	GRCGYC	2 cut(s)	33, 157
Hsp92II	CATG	3 cut(s)	409, 425, 479
HspAI	GCGC	1 cut(s)	33
KasI	GGCGCC	1 cut(s)	32
KpnI	GGTACC	1 cut(s)	536
KspAI	GTTAAC	1 cut(s)	81
Kzo9I	GATC	1 cut(s)	289
LpnPI	CCDG	9 cut(s)	71, 148, 161, 234, 255, 278, 297, 335, 550
LweI	GCATC	2 cut(s)	187, 250
MaeII	ACGT	1 cut(s)	117
MaeIII	GTNAC	1 cut(s)	344
MalI	GATC	1 cut(s)	291
MboI	GATC	1 cut(s)	289
MboII	GAAGA	3 cut(s)	176, 181, 360
Mly113I	GGCGCC	1 cut(s)	33
MnlI	CCTC	4 cut(s)	156, 299, 514, 523
MroXI	GAANNNNTTC	1 cut(s)	517
MseI	TTAA	2 cut(s)	42, 80
MslI	CAYNNNNRTG	1 cut(s)	399
MspA1I	CMGCKG	1 cut(s)	285
MvnI	CGCG	1 cut(s)	510
NarI	GGCGCC	1 cut(s)	33
NdeII	GATC	1 cut(s)	289
NlaIII	CATG	3 cut(s)	409, 425, 479
NlaIV	GGNNCC	2 cut(s)	34, 534
NmeAIII	GCCGAG	1 cut(s)	329
NmuCI	GTSAC	1 cut(s)	344
NspI	RCATGY	1 cut(s)	409
PciI	ACATGT	1 cut(s)	405
PdmI	GAANNNNTTC	1 cut(s)	517
PfeI	GAWTC	5 cut(s)	19, 53, 418, 467, 518
PflMI	CCANNNNNTGG	1 cut(s)	248
PluTI	GGCGCC	1 cut(s)	36
PscI	ACATGT	1 cut(s)	405
PspFI	CCCAGC	2 cut(s)	175, 241
PspN4I	GGNNCC	2 cut(s)	34, 534
PspPI	GGNCC	2 cut(s)	88, 100
PstNI	CAGNNNCTG	1 cut(s)	248
RsaI	GTAC	1 cut(s)	534
RsaNI	GTAC	1 cut(s)	533
RseI	CAYNNNNRTG	1 cut(s)	399
Rsr2I	CGGWCCG	1 cut(s)	100
RsrII	CGGWCCG	1 cut(s)	100
SaqAI	TTAA	2 cut(s)	42, 80
Sau3AI	GATC	1 cut(s)	289
Sau96I	GGNCC	2 cut(s)	88, 100
SfaNI	GCATC	2 cut(s)	187, 250
SfoI	GGCGCC	1 cut(s)	34
SinI	GGWCC	2 cut(s)	88, 100
SmiMI	CAYNNNNRTG	1 cut(s)	399
SmlI	CTYRAG	1 cut(s)	413
SmoI	CTYRAG	1 cut(s)	413
SsiI	CCGC	8 cut(s)	98, 103, 129, 180, 285, 315, 357, 510
SspDI	GGCGCC	1 cut(s)	32
TaaI	ACNGT	1 cut(s)	352
TaiI	ACGT	1 cut(s)	120
TfiI	GAWTC	5 cut(s)	19, 53, 418, 467, 518
Tru1I	TTAA	2 cut(s)	42, 80
Tru9I	TTAA	2 cut(s)	42, 80
TseFI	GTSAC	1 cut(s)	344
Tsp45I	GTSAC	1 cut(s)	344
TspDTI	ATGAA	1 cut(s)	464
TspGWI	ACGGA	1 cut(s)	328
Van91I	CCANNNNNTGG	1 cut(s)	248
VpaK11BI	GGWCC	2 cut(s)	88, 100
XagI	CCTNNNNNAGG	1 cut(s)	527
XceI	RCATGY	1 cut(s)	409
XmnI	GAANNNNTTC	1 cut(s)	517

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.