Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0030160.1

Orthogroup ID

OG0010512

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 655

Gene Structure 654 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0030160.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

tccagctgagtgtcttgtgagatacgcagagaattgtgatcggggtaaaaatccagttcagaactccacagacgtatcctcattgatctccagtgcaggggcagggtccaccttccctaatactgaaattggatcctcatctcagagcgttgttccagtcggtcagggtacttattttgaagaaggtttaagaagtattgacacaagtaaccaggggaagtgcttgtccagaagtaaggagctcatttctcatccggtaagtgctggttgtaatcatgatgaatctagtagggataatagtactacagctagtacttcgtttaaagaacaacaatcttgccacccaatctctgtgaatagttcggctaacatggatgcagtcaatggctccgcagacaagaatgtatctcaggcatgtcctgtggttatgcgtccaagtagttcttctccacaagggattgggaattcccattctgatgacatgtccgttgagaatcatgtagctgaagtaatggatgtccataatactaatgctgatactgattctgttcatgtttctgatataccattaccttttccctcacgcggaaatgattcccttcgggaggtaccttctggcttaggattccttgtgtccaacagggaacaaagccg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000578 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007275 GO:0007389 GO:0008134 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009790 GO:0009798 GO:0009880 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0032501 GO:0032502 GO:0036211 GO:0042802 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044464 GO:0048856 GO:0051603 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_11 zf-RING_2

Protein Analysis

218

Amino Acids

22.99

Weight (kDa)

4.94

Isoelectric Point (pI)

63.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010512)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g01770
malus_domestica	MD02G1013400.v1.1 MD15G1160200.v1.1
prunus_persica	Prupe.7G255200_v2.0.a1 Prupe.7G255200_v2.0.a1 Prupe.7G255200_v2.0.a1
pyrus_communis	pycom02g01250 pycom15g14410
rosa_chinensis	RchiOBHm_Chr2g0086731
rosa_laevigata	RLG00000015786
rosa_multiflora	Rmu_sc0000335.1_g000009 Rmu_sc0004626.1_g000001 Rmu_sc0030160.1_g000001 Rmu_sc0035211.1_g000001
rosa_roxburghii	Rroxscaffold_2G00154240
rosa_rugosa	Rorug01G0469200
rosa_samantha	Rh2AG021300 Rh2BG021200 Rh2CG022100 Rh2DG021900
rosa_wichuraiana	Rw2G001730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	608
AccB1I	GGYRCC	1 cut(s)	608
AccII	CGCG	1 cut(s)	586
AciI	CCGC	2 cut(s)	391, 586
AclWI	GGATC	2 cut(s)	127, 140
AcsI	RAATTY	1 cut(s)	464
AcuI	CTGAAG	1 cut(s)	526
AfaI	GTAC	4 cut(s)	170, 302, 314, 610
AfiI	CCNNNNNNNGG	3 cut(s)	97, 585, 605
AflIII	ACRYGT	1 cut(s)	481
AgsI	TTSAA	1 cut(s)	180
AjnI	CCWGG	1 cut(s)	211
AjuI	GAANNNNNNNTTGG	2 cut(s)	428, 460
AluBI	AGCT	4 cut(s)	6, 242, 309, 504
AluI	AGCT	4 cut(s)	6, 242, 309, 504
Alw21I	GWGCWC	1 cut(s)	244
AlwI	GGATC	2 cut(s)	127, 140
ApoI	RAATTY	1 cut(s)	464
Asp700I	GAANNNNTTC	1 cut(s)	593
Asp718I	GGTACC	1 cut(s)	608
AspS9I	GGNCC	1 cut(s)	106
AvaII	GGWCC	1 cut(s)	106
BaeI	ACNNNNGTAYC	2 cut(s)	58, 91
BamHI	GGATCC	1 cut(s)	132
BanI	GGYRCC	1 cut(s)	608
BanII	GRGCYC	1 cut(s)	244
Bbv12I	GWGCWC	1 cut(s)	244
BciT130I	CCWGG	1 cut(s)	213
BciVI	GTATCC	1 cut(s)	86
BfaI	CTAG	2 cut(s)	286, 310
BfmI	CTRYAG	1 cut(s)	304
BfuI	GTATCC	1 cut(s)	86
BmcAI	AGTACT	2 cut(s)	302, 314
Bme1390I	CCNGG	1 cut(s)	213
Bme18I	GGWCC	1 cut(s)	106
BmgT120I	GGNCC	1 cut(s)	106
BmiI	GGNNCC	4 cut(s)	107, 134, 389, 610
BmrFI	CCNGG	1 cut(s)	213
BmsI	GCATC	1 cut(s)	365
BpmI	CTGGAG	1 cut(s)	74
Bpu10I	CCTNAGC	1 cut(s)	620
BsaBI	GATNNNNATC	1 cut(s)	137
BsaJI	CCNNGG	1 cut(s)	212
BsaWI	WCCGGW	1 cut(s)	254
Bsc4I	CCNNNNNNNGG	3 cut(s)	97, 585, 605
Bse1I	ACTGG	3 cut(s)	54, 91, 156
Bse8I	GATNNNNATC	1 cut(s)	137
BseBI	CCWGG	1 cut(s)	213
BseDI	CCNNGG	1 cut(s)	212
BseGI	GGATG	3 cut(s)	251, 380, 521
BseJI	GATNNNNATC	1 cut(s)	137
BseLI	CCNNNNNNNGG	3 cut(s)	97, 585, 605
BseMII	CTCAG	2 cut(s)	156, 423
BseNI	ACTGG	3 cut(s)	54, 91, 156
BsgI	GTGCAG	1 cut(s)	115
Bsh1236I	CGCG	1 cut(s)	586
BshNI	GGYRCC	1 cut(s)	608
BsiHKAI	GWGCWC	1 cut(s)	244
BsiSI	CCGG	1 cut(s)	255
BslI	CCNNNNNNNGG	3 cut(s)	97, 585, 605
Bsp1286I	GDGCHC	1 cut(s)	244
Bsp143I	GATC	3 cut(s)	38, 85, 132
BspACI	CCGC	2 cut(s)	391, 586
BspCNI	CTCAG	2 cut(s)	155, 422
BspFNI	CGCG	1 cut(s)	586
BspHI	TCATGA	1 cut(s)	275
BspLI	GGNNCC	4 cut(s)	107, 134, 389, 610
BspPI	GGATC	2 cut(s)	127, 140
BspT107I	GGYRCC	1 cut(s)	608
BsrI	ACTGG	3 cut(s)	54, 91, 156
BssECI	CCNNGG	1 cut(s)	212
BssMI	GATC	3 cut(s)	38, 85, 132
Bst2UI	CCWGG	1 cut(s)	213
BstDEI	CTNAG	4 cut(s)	7, 142, 409, 620
BstENI	CCTNNNNNAGG	1 cut(s)	603
BstF5I	GGATG	3 cut(s)	251, 380, 521
BstFNI	CGCG	1 cut(s)	586
BstKTI	GATC	3 cut(s)	41, 88, 135
BstMBI	GATC	3 cut(s)	38, 85, 132
BstNI	CCWGG	1 cut(s)	213
BstNSI	RCATGY	2 cut(s)	418, 485
BstSCI	CCNGG	1 cut(s)	211
BstSFI	CTRYAG	1 cut(s)	304
BstUI	CGCG	1 cut(s)	586
BstX2I	RGATCY	1 cut(s)	132
BstYI	RGATCY	1 cut(s)	132
BsuI	GTATCC	1 cut(s)	86
BtsCI	GGATG	3 cut(s)	251, 380, 521
BtsIMutI	CAGTG	1 cut(s)	98
CciI	TCATGA	1 cut(s)	275
Cfr13I	GGNCC	1 cut(s)	106
CseI	GACGC	1 cut(s)	420
Csp6I	GTAC	4 cut(s)	169, 301, 313, 609
CviAII	CATG	6 cut(s)	276, 371, 415, 482, 498, 552
CviJI	RGCY	8 cut(s)	6, 242, 309, 366, 388, 504, 619, 652
CviKI_1	RGCY	8 cut(s)	6, 242, 309, 366, 388, 504, 619, 652
CviQI	GTAC	4 cut(s)	169, 301, 313, 609
DdeI	CTNAG	4 cut(s)	7, 142, 409, 620
DpnI	GATC	3 cut(s)	40, 87, 134
DpnII	GATC	3 cut(s)	38, 85, 132
DraI	TTTAAA	1 cut(s)	323
Ecl136II	GAGCTC	1 cut(s)	242
Eco24I	GRGCYC	1 cut(s)	244
Eco47I	GGWCC	1 cut(s)	106
Eco53kI	GAGCTC	1 cut(s)	242
Eco57I	CTGAAG	1 cut(s)	526
EcoICRI	GAGCTC	1 cut(s)	242
EcoNI	CCTNNNNNAGG	1 cut(s)	603
EcoRI	GAATTC	1 cut(s)	464
EcoRII	CCWGG	1 cut(s)	211
EcoT38I	GRGCYC	1 cut(s)	244
FaeI	CATG	6 cut(s)	279, 374, 418, 485, 501, 555
FaiI	YATR	9 cut(s)	277, 372, 416, 429, 483, 499, 523, 553, 564
FalI	AAGNNNNNCTT	2 cut(s)	428, 460
FatI	CATG	6 cut(s)	275, 370, 414, 481, 497, 551
FokI	GGATG	3 cut(s)	238, 387, 528
FriOI	GRGCYC	1 cut(s)	244
FspBI	CTAG	2 cut(s)	286, 310
GsuI	CTGGAG	1 cut(s)	74
HapII	CCGG	1 cut(s)	255
HgaI	GACGC	1 cut(s)	420
Hin1II	CATG	6 cut(s)	279, 374, 418, 485, 501, 555
HinfI	GANTC	5 cut(s)	282, 494, 543, 594, 625
HpaII	CCGG	1 cut(s)	255
Hpy166II	GTNNAC	1 cut(s)	109
Hpy188I	TCNGA	4 cut(s)	61, 145, 476, 560
Hpy188III	TCNNGA	3 cut(s)	229, 276, 603
Hpy8I	GTNNAC	1 cut(s)	109
HpyAV	CCTTC	4 cut(s)	122, 177, 609, 622
HpyCH4IV	ACGT	1 cut(s)	73
HpyCH4V	TGCA	2 cut(s)	96, 378
HpyF3I	CTNAG	4 cut(s)	7, 142, 409, 620
HpySE526I	ACGT	1 cut(s)	73
Hsp92II	CATG	6 cut(s)	279, 374, 418, 485, 501, 555
KpnI	GGTACC	1 cut(s)	612
Kzo9I	GATC	3 cut(s)	38, 85, 132
LmnI	GCTCC	2 cut(s)	239, 393
LweI	GCATC	1 cut(s)	365
MaeI	CTAG	2 cut(s)	286, 310
MaeII	ACGT	1 cut(s)	73
MaeIII	GTNAC	1 cut(s)	207
MalI	GATC	3 cut(s)	40, 87, 134
MboI	GATC	3 cut(s)	38, 85, 132
MboII	GAAGA	2 cut(s)	192, 436
MflI	RGATCY	1 cut(s)	132
MhlI	GDGCHC	1 cut(s)	244
MluCI	AATT	3 cut(s)	32, 127, 464
MnlI	CCTC	4 cut(s)	89, 146, 590, 599
MroXI	GAANNNNTTC	1 cut(s)	593
MseI	TTAA	2 cut(s)	189, 322
MslI	CAYNNNNRTG	1 cut(s)	475
MspA1I	CMGCKG	1 cut(s)	6
MspI	CCGG	1 cut(s)	255
MspR9I	CCNGG	1 cut(s)	213
MvaI	CCWGG	1 cut(s)	213
MvnI	CGCG	1 cut(s)	586
NdeII	GATC	3 cut(s)	38, 85, 132
NlaIII	CATG	6 cut(s)	279, 374, 418, 485, 501, 555
NlaIV	GGNNCC	4 cut(s)	107, 134, 389, 610
NspI	RCATGY	2 cut(s)	418, 485
PagI	TCATGA	1 cut(s)	275
PciI	ACATGT	1 cut(s)	481
PdmI	GAANNNNTTC	1 cut(s)	593
PfeI	GAWTC	5 cut(s)	282, 494, 543, 594, 625
PscI	ACATGT	1 cut(s)	481
Psp124BI	GAGCTC	1 cut(s)	244
Psp6I	CCWGG	1 cut(s)	211
PspGI	CCWGG	1 cut(s)	211
PspN4I	GGNNCC	4 cut(s)	107, 134, 389, 610
PspPI	GGNCC	1 cut(s)	106
PsuI	RGATCY	1 cut(s)	132
PvuII	CAGCTG	1 cut(s)	6
RsaI	GTAC	4 cut(s)	170, 302, 314, 610
RsaNI	GTAC	4 cut(s)	169, 301, 313, 609
RseI	CAYNNNNRTG	1 cut(s)	475
SacI	GAGCTC	1 cut(s)	244
SaqAI	TTAA	2 cut(s)	189, 322
Sau3AI	GATC	3 cut(s)	38, 85, 132
Sau96I	GGNCC	1 cut(s)	106
ScaI	AGTACT	2 cut(s)	302, 314
ScrFI	CCNGG	1 cut(s)	213
SduI	GDGCHC	1 cut(s)	244
SfaNI	GCATC	1 cut(s)	365
SfcI	CTRYAG	1 cut(s)	304
SinI	GGWCC	1 cut(s)	106
SmiMI	CAYNNNNRTG	1 cut(s)	475
Sse9I	AATT	3 cut(s)	32, 127, 464
SsiI	CCGC	2 cut(s)	391, 586
SspMI	CTAG	2 cut(s)	286, 310
SstI	GAGCTC	1 cut(s)	244
StyD4I	CCNGG	1 cut(s)	211
TaiI	ACGT	1 cut(s)	76
TaqII	GACCGA	1 cut(s)	150
TasI	AATT	3 cut(s)	32, 127, 464
TatI	WGTACW	2 cut(s)	300, 312
TfiI	GAWTC	5 cut(s)	282, 494, 543, 594, 625
Tru1I	TTAA	2 cut(s)	189, 322
Tru9I	TTAA	2 cut(s)	189, 322
TscAI	CASTG	1 cut(s)	98
TspDTI	ATGAA	2 cut(s)	295, 540
TspGWI	ACGGA	1 cut(s)	476
TspRI	CASTG	1 cut(s)	98
VpaK11BI	GGWCC	1 cut(s)	106
XagI	CCTNNNNNAGG	1 cut(s)	603
XapI	RAATTY	1 cut(s)	464
XceI	RCATGY	2 cut(s)	418, 485
XmnI	GAANNNNTTC	1 cut(s)	593
XspI	CTAG	2 cut(s)	286, 310
ZrmI	AGTACT	2 cut(s)	302, 314

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.