Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0010512

Physical Location & Seq

Genomic Coordinates Forward (+)

90899156 .. 90903030

Gene Structure 3875 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00154240.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1626 bp

ATGGGTTCGAGCACTAGCCGACTGGGTTCGCGCCCATCTCGGCCCCGACCCAACCGCACCGCCAATCGTTCCCTACTCTCCTCTCTCGTCTGCGGAGGCTCTTCCTCACGTGCCGCTCACGAGATGGAAGATCATCCAGCTGAGTGTCTTGTGAGATACGCCGAGAATTGTGATCGGGGTAAAAATCCAGTGCAGAACTCCACAGACGTATCCTCGTTGATCTCCAGTGCAGGGGCAGGGTCCACCTTCCCTAATACTGAAATTGGATCCTCATCTCAGAGCGTTGTTCCAGCCGGTCAGGGTAGTAATTTTGAAGAAGGTTTAAGAAGTCTTGACACGAGTAACCAGGGGAAGTGCTTGTCCAGAAGTAAGGAGCTCATTTCTCATCCGGTAAGTGCTGGTTGTAATCATGATGAATCTAGTAGGGATAATAGTACAGCAGCTAGTACTTCGTTTAAAGAACAACAATCTTCCCGCTCAGTCTCTGTGAATAGTTCGGCTAACATGGATGCAGTCAATGGCTCCGCAGACAAGAATGTATCTCAGGCGTGTCCTGTGGTTATGTGTCCAAGTAGTTCTTCTCCACAAGGGATTGGGAATTCCCGTTCTGATGACATGTCCGTTGAGAATCATGTAGCTGAAGTAATGGCTGTCCATAATACTAATGCTGATACTGATTCTGTTCATGTTTCTGATGTACCATTACCTTTTCCCTCACGCGCAACTGATTCCCTTCGGGAGGTACCTTCTGGCTTAGGATTCCTTGTGTCCAACAGGGAACAAAGCCGGGAAGATGGAAGCGTAGTTCATGTTGATGTCATGAGCATTTCTTCAAACTTTTTGTCCAGTAGTAATGCTGATACAAGTAACCGTGAGTCCAGAAGGAATGGTAGGCGTCTGTTTTGGGATGCATTTTCAAGACGCAGTTCCAGAAGGTTTATTGATTCTCCAACCATACTTTTCTCTACTGATGACACTGAGGATCTAGGATTTCATGACAGATGGCTACTTGGTTTGAGTGGTGATTTTCTTGATGATCGGAGTGGAGCTGATTCTGGCCACCGGGTCAATAGAACTCCCAACTTGAGTGAACGGCGCCGGCACTCTAGATCTGAGGTCTGGGAAAGGCTTCGTGGTGGTCTTGATGATAATGCTCACCGCAATACTACTTGTCCTACAGGAATTCACCCGGGTGGCATGTGCTCCTGTGGTTCATTCTTGATGACAGAAGAGTCTAGTGCTCGGGCAAGTATATCGAGAATTGTCATGCTTGCTGAAGCTCTATTCGAGGTTTTGGATGAAATTCATCGCCAACCTGTGTCACTTTCACTGTCTATGGTCTCAGTCCCTGCCCCAGCATCTGTCGTTGATTCATTTCCTCTTAAGAGTCACACTAAGGTTGACAAATTGAAGCATGGGGATGATGCTGAACAGTGCCACATCTGCCTCGCTGAGTATGAGGAAGGGGACAAAATTCGAGTTCTGCCCTGCCACCATGAGTATCACATGTCATGTGTGGATAAGTGGCTTAAAGAGATACATGGAGTTTGTCCACTTTGTCGAGGAGATGTTCGTGAAGGTTTAAACGACTGTTCCGTATCTAACTCAGGGATATCTTCTATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000578 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007275 GO:0007389 GO:0008134 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009790 GO:0009798 GO:0009880 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0032501 GO:0032502 GO:0036211 GO:0042802 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044464 GO:0048856 GO:0051603 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_11 zf-RING_2

Protein Analysis

541

Amino Acids

58.53

Weight (kDa)

5.84

Isoelectric Point (pI)

65.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-rbx1	PF12678	477 - 521	2.1e-07	RING-H2 zinc finger domain
zf-RING_2	PF13639	478 - 521	3.1e-12	Ring finger domain
zf-RING_11	PF17123	478 - 506	3.2e-08	RING-like zinc finger
zf-C3HC4_2	PF13923	478 - 520	3.7e-06	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4	PF00097	479 - 520	9e-08	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010512)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g01770
malus_domestica	MD02G1013400.v1.1 MD15G1160200.v1.1
prunus_persica	Prupe.7G255200_v2.0.a1 Prupe.7G255200_v2.0.a1 Prupe.7G255200_v2.0.a1
pyrus_communis	pycom02g01250 pycom15g14410
rosa_chinensis	RchiOBHm_Chr2g0086731
rosa_laevigata	RLG00000015786
rosa_multiflora	Rmu_sc0000335.1_g000009 Rmu_sc0004626.1_g000001 Rmu_sc0030160.1_g000001 Rmu_sc0035211.1_g000001
rosa_roxburghii	Rroxscaffold_2G00154240
rosa_rugosa	Rorug01G0469200
rosa_samantha	Rh2AG021300 Rh2BG021200 Rh2CG022100 Rh2DG021900
rosa_wichuraiana	Rw2G001730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1231
Acc65I	GGTACC	1 cut(s)	742
AccB1I	GGYRCC	2 cut(s)	742, 1095
AccBSI	CCGCTC	2 cut(s)	116, 477
AccII	CGCG	2 cut(s)	31, 720
AciI	CCGC	7 cut(s)	55, 60, 93, 114, 475, 525, 1159
AclWI	GGATC	3 cut(s)	261, 274, 990
AcoI	YGGCCR	1 cut(s)	1057
AcsI	RAATTY	4 cut(s)	598, 1182, 1302, 1473
AcuI	CTGAAG	2 cut(s)	660, 1296
AcvI	CACGTG	1 cut(s)	110
AcyI	GRCGYC	2 cut(s)	895, 1096
AfaI	GTAC	4 cut(s)	436, 448, 699, 744
AfiI	CCNNNNNNNGG	2 cut(s)	231, 739
AflII	CTTAAG	1 cut(s)	1382
AflIII	ACRYGT	2 cut(s)	615, 1506
AgsI	TTSAA	4 cut(s)	314, 834, 918, 1411
AjnI	CCWGG	1 cut(s)	345
AjuI	GAANNNNNNNTTGG	2 cut(s)	562, 594
AleI	CACNNNNGTG	1 cut(s)	1191
AloI	GAACNNNNNNTCC	4 cut(s)	589, 621, 789, 821
AluBI	AGCT	6 cut(s)	140, 376, 443, 638, 1049, 1280
AluI	AGCT	6 cut(s)	140, 376, 443, 638, 1049, 1280
Alw21I	GWGCWC	4 cut(s)	14, 378, 1205, 1243
Alw26I	GTCTC	2 cut(s)	487, 1345
AlwI	GGATC	3 cut(s)	261, 274, 990
AlwNI	CAGNNNCTG	3 cut(s)	485, 1349, 1361
Ama87I	CYCGRG	2 cut(s)	1189, 1242
AoxI	GGCC	2 cut(s)	41, 1057
ApeKI	GCWGC	1 cut(s)	440
ApoI	RAATTY	4 cut(s)	598, 1182, 1302, 1473
ArsI	GACNNNNNNTTYG	2 cut(s)	827, 859
Asp700I	GAANNNNTTC	1 cut(s)	1128
Asp718I	GGTACC	1 cut(s)	742
AspLEI	GCGC	3 cut(s)	33, 722, 1098
AspS9I	GGNCC	2 cut(s)	42, 240
AsuC2I	CCSGG	4 cut(s)	788, 1064, 1190, 1191
AsuHPI	GGTGA	3 cut(s)	1034, 1148, 1178
AvaI	CYCGRG	2 cut(s)	1189, 1242
AvaII	GGWCC	1 cut(s)	240
BaeI	ACNNNNGTAYC	2 cut(s)	192, 225
BalI	TGGCCA	1 cut(s)	1059
BamHI	GGATCC	1 cut(s)	266
BanI	GGYRCC	2 cut(s)	742, 1095
BanII	GRGCYC	1 cut(s)	378
BauI	CACGAG	2 cut(s)	119, 337
BbrPI	CACGTG	1 cut(s)	110
Bbv12I	GWGCWC	4 cut(s)	14, 378, 1205, 1243
BbvI	GCAGC	1 cut(s)	452
BccI	CCATC	4 cut(s)	43, 118, 788, 996
BceAI	ACGGC	1 cut(s)	1109
BcgI	CGANNNNNNTGC	2 cut(s)	1236, 1270
BciT130I	CCWGG	1 cut(s)	347
BciVI	GTATCC	1 cut(s)	220
BcnI	CCSGG	4 cut(s)	788, 1064, 1190, 1191
BcoDI	GTCTC	2 cut(s)	487, 1345
BfaI	CTAG	6 cut(s)	15, 420, 444, 986, 1107, 1236
BfmI	CTRYAG	1 cut(s)	1176
BfoI	RGCGCY	1 cut(s)	1099
BfrI	CTTAAG	1 cut(s)	1382
BfuI	GTATCC	1 cut(s)	220
BglII	AGATCT	1 cut(s)	1109
BisI	GCNGC	2 cut(s)	114, 441
BlsI	GCNGC	2 cut(s)	115, 442
BmcAI	AGTACT	1 cut(s)	448
Bme1390I	CCNGG	5 cut(s)	347, 788, 1064, 1190, 1191
Bme18I	GGWCC	1 cut(s)	240
BmeT110I	CYCGRG	2 cut(s)	1189, 1242
BmgT120I	GGNCC	2 cut(s)	42, 240
BmiI	GGNNCC	6 cut(s)	44, 241, 268, 523, 744, 1097
BmrFI	CCNGG	5 cut(s)	347, 788, 1064, 1190, 1191
BmrI	ACTGGG	1 cut(s)	32
BmsI	GCATC	4 cut(s)	499, 898, 1367, 1414
BmuI	ACTGGG	1 cut(s)	32
BpmI	CTGGAG	1 cut(s)	208
Bpu10I	CCTNAGC	1 cut(s)	754
BpuEI	CTTGAG	1 cut(s)	1105
BpuMI	CCSGG	4 cut(s)	788, 1064, 1190, 1191
BsaAI	YACGTR	1 cut(s)	110
BsaBI	GATNNNNATC	1 cut(s)	271
BsaHI	GRCGYC	2 cut(s)	895, 1096
BsaI	GGTCTC	1 cut(s)	1345
BsaJI	CCNNGG	2 cut(s)	346, 1189
BsaWI	WCCGGW	1 cut(s)	388
Bsc4I	CCNNNNNNNGG	2 cut(s)	231, 739
Bse118I	RCCGGY	2 cut(s)	293, 1098
Bse1I	ACTGG	4 cut(s)	27, 188, 225, 846
Bse8I	GATNNNNATC	1 cut(s)	271
BseBI	CCWGG	1 cut(s)	347
BseDI	CCNNGG	2 cut(s)	346, 1189
BseGI	GGATG	6 cut(s)	133, 385, 514, 913, 1303, 1426
BseJI	GATNNNNATC	1 cut(s)	271
BseLI	CCNNNNNNNGG	2 cut(s)	231, 739
BseMII	CTCAG	9 cut(s)	132, 290, 492, 557, 969, 1104, 1356, 1443, 1620
BseNI	ACTGG	4 cut(s)	27, 188, 225, 846
BseRI	GAGGAG	2 cut(s)	70, 1578
BseXI	GCAGC	1 cut(s)	452
BseYI	CCCAGC	1 cut(s)	1354
BsgI	GTGCAG	2 cut(s)	212, 249
Bsh1236I	CGCG	2 cut(s)	31, 720
BshFI	GGCC	2 cut(s)	43, 1059
BshNI	GGYRCC	2 cut(s)	742, 1095
BsiHKAI	GWGCWC	4 cut(s)	14, 378, 1205, 1243
BsiHKCI	CYCGRG	2 cut(s)	1189, 1242
BsiSI	CCGG	6 cut(s)	294, 389, 787, 1063, 1099, 1190
BslFI	GGGAC	2 cut(s)	1331, 1481
BslI	CCNNNNNNNGG	2 cut(s)	231, 739
BsmAI	GTCTC	2 cut(s)	487, 1345
BsmFI	GGGAC	2 cut(s)	1331, 1481
BsnI	GGCC	2 cut(s)	43, 1059
Bso31I	GGTCTC	1 cut(s)	1345
BsoBI	CYCGRG	2 cut(s)	1189, 1242
Bsp1286I	GDGCHC	4 cut(s)	14, 378, 1205, 1243
Bsp143I	GATC	7 cut(s)	130, 172, 219, 266, 982, 1036, 1109
BspACI	CCGC	7 cut(s)	55, 60, 93, 114, 475, 525, 1159
BspANI	GGCC	2 cut(s)	43, 1059
BspCNI	CTCAG	9 cut(s)	133, 289, 491, 556, 970, 1105, 1355, 1444, 1619
BspFNI	CGCG	2 cut(s)	31, 720
BspHI	TCATGA	3 cut(s)	409, 819, 994
BspLI	GGNNCC	6 cut(s)	44, 241, 268, 523, 744, 1097
BspPI	GGATC	3 cut(s)	261, 274, 990
BspQI	GCTCTTC	1 cut(s)	106
BspT107I	GGYRCC	2 cut(s)	742, 1095
BspTI	CTTAAG	1 cut(s)	1382
BspTNI	GGTCTC	1 cut(s)	1345
BsrBI	CCGCTC	2 cut(s)	116, 477
BsrFI	RCCGGY	2 cut(s)	293, 1098
BsrI	ACTGG	4 cut(s)	27, 188, 225, 846
BssAI	RCCGGY	2 cut(s)	293, 1098
BssECI	CCNNGG	2 cut(s)	346, 1189
BssMI	GATC	7 cut(s)	130, 172, 219, 266, 982, 1036, 1109
BssNI	GRCGYC	2 cut(s)	895, 1096
BssSI	CACGAG	2 cut(s)	119, 337
Bst2BI	CACGAG	2 cut(s)	119, 337
Bst2UI	CCWGG	1 cut(s)	347
Bst4CI	ACNGT	4 cut(s)	872, 1332, 1434, 1592
Bst6I	CTCTTC	2 cut(s)	106, 1224
BstACI	GRCGYC	2 cut(s)	895, 1096
BstAFI	CTTAAG	1 cut(s)	1382
BstBAI	YACGTR	1 cut(s)	110
BstC8I	GCNNGC	2 cut(s)	1100, 1272
BstENI	CCTNNNNNAGG	1 cut(s)	737
BstF5I	GGATG	6 cut(s)	133, 385, 514, 913, 1303, 1426
BstFNI	CGCG	2 cut(s)	31, 720
BstH2I	RGCGCY	1 cut(s)	1099
BstHHI	GCGC	3 cut(s)	33, 722, 1098
BstKTI	GATC	7 cut(s)	133, 175, 222, 269, 985, 1039, 1112
BstMAI	GTCTC	2 cut(s)	487, 1345
BstMBI	GATC	7 cut(s)	130, 172, 219, 266, 982, 1036, 1109
BstMWI	GCNNNNNNNGC	1 cut(s)	1443
BstNI	CCWGG	1 cut(s)	347
BstNSI	RCATGY	3 cut(s)	619, 1201, 1510
BstSCI	CCNGG	5 cut(s)	345, 786, 1062, 1188, 1189
BstSFI	CTRYAG	1 cut(s)	1176
BstUI	CGCG	2 cut(s)	31, 720
BstV1I	GCAGC	1 cut(s)	452
BstX2I	RGATCY	3 cut(s)	266, 982, 1109
BstYI	RGATCY	3 cut(s)	266, 982, 1109
BsuI	GTATCC	1 cut(s)	220
BsuRI	GGCC	2 cut(s)	43, 1059
BtgZI	GCGATG	1 cut(s)	1292
BtsCI	GGATG	6 cut(s)	133, 385, 514, 913, 1303, 1426
BtsIMutI	CAGTG	5 cut(s)	195, 232, 975, 1328, 1439
Cac8I	GCNNGC	2 cut(s)	1100, 1272
CaiI	CAGNNNCTG	3 cut(s)	485, 1349, 1361
CciI	TCATGA	3 cut(s)	409, 819, 994
CfoI	GCGC	3 cut(s)	33, 722, 1098
Cfr10I	RCCGGY	2 cut(s)	293, 1098
Cfr13I	GGNCC	2 cut(s)	42, 240
Cfr9I	CCCGGG	1 cut(s)	1189
CseI	GACGC	2 cut(s)	884, 930
Csp6I	GTAC	4 cut(s)	435, 447, 698, 743
CviQI	GTAC	4 cut(s)	435, 447, 698, 743
DinI	GGCGCC	1 cut(s)	1097
DpnI	GATC	7 cut(s)	132, 174, 221, 268, 984, 1038, 1111
DpnII	GATC	7 cut(s)	130, 172, 219, 266, 982, 1036, 1109
DraI	TTTAAA	2 cut(s)	457, 1584
DrdI	GACNNNNNNGTC	1 cut(s)	1231
DseDI	GACNNNNNNGTC	1 cut(s)	1231
EaeI	YGGCCR	1 cut(s)	1057
Eam1104I	CTCTTC	2 cut(s)	106, 1224
EarI	CTCTTC	2 cut(s)	106, 1224
Ecl136II	GAGCTC	1 cut(s)	376
Eco24I	GRGCYC	1 cut(s)	378
Eco31I	GGTCTC	1 cut(s)	1345
Eco32I	GATATC	1 cut(s)	1614
Eco47I	GGWCC	1 cut(s)	240
Eco53kI	GAGCTC	1 cut(s)	376
Eco57I	CTGAAG	2 cut(s)	660, 1296
Eco72I	CACGTG	1 cut(s)	110
Eco88I	CYCGRG	2 cut(s)	1189, 1242
EcoICRI	GAGCTC	1 cut(s)	376
EcoNI	CCTNNNNNAGG	1 cut(s)	737
EcoRI	GAATTC	2 cut(s)	598, 1182
EcoRII	CCWGG	1 cut(s)	345
EcoRV	GATATC	1 cut(s)	1614
EcoT22I	ATGCAT	1 cut(s)	913
EcoT38I	GRGCYC	1 cut(s)	378
EgeI	GGCGCC	1 cut(s)	1097
EheI	GGCGCC	1 cut(s)	1097
FalI	AAGNNNNNCTT	2 cut(s)	562, 594
FaqI	GGGAC	2 cut(s)	1331, 1481
FauI	CCCGC	1 cut(s)	482
Fnu4HI	GCNGC	2 cut(s)	114, 441
FokI	GGATG	6 cut(s)	120, 372, 521, 920, 1310, 1433
FriOI	GRGCYC	1 cut(s)	378
Fsp4HI	GCNGC	2 cut(s)	114, 441
FspBI	CTAG	6 cut(s)	15, 420, 444, 986, 1107, 1236
GlaI	GCGC	3 cut(s)	32, 721, 1097
GluI	GCNGC	2 cut(s)	114, 441
GsaI	CCCAGC	1 cut(s)	1358
GsuI	CTGGAG	1 cut(s)	208
HaeII	RGCGCY	1 cut(s)	1099
HaeIII	GGCC	2 cut(s)	43, 1059
HapII	CCGG	6 cut(s)	294, 389, 787, 1063, 1099, 1190
HgaI	GACGC	2 cut(s)	884, 930
HhaI	GCGC	3 cut(s)	33, 722, 1098
Hin1I	GRCGYC	2 cut(s)	895, 1096
Hin6I	GCGC	3 cut(s)	31, 720, 1096
HinP1I	GCGC	3 cut(s)	31, 720, 1096
HincII	GTYRAC	1 cut(s)	1402
HindII	GTYRAC	1 cut(s)	1402
HpaII	CCGG	6 cut(s)	294, 389, 787, 1063, 1099, 1190
HphI	GGTGA	3 cut(s)	1034, 1148, 1178
Hpy166II	GTNNAC	4 cut(s)	243, 1091, 1402, 1553
Hpy188I	TCNGA	5 cut(s)	279, 610, 694, 1041, 1114
Hpy8I	GTNNAC	4 cut(s)	243, 1091, 1402, 1553
HpyAV	CCTTC	8 cut(s)	256, 311, 743, 756, 876, 927, 1457, 1571
HpyCH4III	ACNGT	4 cut(s)	872, 1332, 1434, 1592
HpyCH4IV	ACGT	2 cut(s)	109, 207
HpyCH4V	TGCA	4 cut(s)	193, 230, 512, 911
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1443
HpySE526I	ACGT	2 cut(s)	109, 207
Hsp92I	GRCGYC	2 cut(s)	895, 1096
HspAI	GCGC	3 cut(s)	31, 720, 1096
KasI	GGCGCC	1 cut(s)	1095
KpnI	GGTACC	1 cut(s)	746
KroI	GCCGGC	1 cut(s)	1098
KroNI	GCCGGC	1 cut(s)	1100
Kzo9I	GATC	7 cut(s)	130, 172, 219, 266, 982, 1036, 1109
LguI	GCTCTTC	1 cut(s)	106
LmnI	GCTCC	4 cut(s)	373, 527, 1046, 1208
Lsp1109I	GCAGC	1 cut(s)	452
LweI	GCATC	4 cut(s)	499, 898, 1367, 1414
MaeI	CTAG	6 cut(s)	15, 420, 444, 986, 1107, 1236
MaeII	ACGT	2 cut(s)	109, 207
MaeIII	GTNAC	4 cut(s)	341, 866, 1320, 1388
MalI	GATC	7 cut(s)	132, 174, 221, 268, 984, 1038, 1111
MbiI	CCGCTC	2 cut(s)	116, 477
MboI	GATC	7 cut(s)	130, 172, 219, 266, 982, 1036, 1109
MboII	GAAGA	9 cut(s)	93, 140, 326, 462, 570, 803, 822, 1241, 1608
MflI	RGATCY	3 cut(s)	266, 982, 1109
MhlI	GDGCHC	4 cut(s)	14, 378, 1205, 1243
MlsI	TGGCCA	1 cut(s)	1059
MluCI	AATT	9 cut(s)	166, 261, 307, 598, 1182, 1260, 1302, 1406, 1473
MluNI	TGGCCA	1 cut(s)	1059
Mly113I	GGCGCC	1 cut(s)	1096
MlyI	GAGTC	3 cut(s)	884, 1241, 1396
MmeI	TCCRAC	2 cut(s)	795, 974
Mox20I	TGGCCA	1 cut(s)	1059
Mph1103I	ATGCAT	1 cut(s)	913
MroNI	GCCGGC	1 cut(s)	1098
MroXI	GAANNNNTTC	1 cut(s)	1128
MscI	TGGCCA	1 cut(s)	1059
MseI	TTAA	5 cut(s)	323, 456, 1383, 1530, 1583
MslI	CAYNNNNRTG	3 cut(s)	813, 1191, 1419
Msp20I	TGGCCA	1 cut(s)	1059
MspA1I	CMGCKG	1 cut(s)	140
MspCI	CTTAAG	1 cut(s)	1382
MspI	CCGG	6 cut(s)	294, 389, 787, 1063, 1099, 1190
MspR9I	CCNGG	5 cut(s)	347, 788, 1064, 1190, 1191
MssI	GTTTAAAC	1 cut(s)	1584
MvaI	CCWGG	1 cut(s)	347
MvnI	CGCG	2 cut(s)	31, 720
MwoI	GCNNNNNNNGC	1 cut(s)	1443
NaeI	GCCGGC	1 cut(s)	1100
NarI	GGCGCC	1 cut(s)	1096
NciI	CCSGG	4 cut(s)	788, 1064, 1190, 1191
NdeII	GATC	7 cut(s)	130, 172, 219, 266, 982, 1036, 1109
NgoMIV	GCCGGC	1 cut(s)	1098
NlaIV	GGNNCC	6 cut(s)	44, 241, 268, 523, 744, 1097
NmeAIII	GCCGAG	2 cut(s)	19, 187
NmuCI	GTSAC	2 cut(s)	1320, 1388
NsiI	ATGCAT	1 cut(s)	913
NspI	RCATGY	3 cut(s)	619, 1201, 1510
OliI	CACNNNNGTG	1 cut(s)	1191
PagI	TCATGA	3 cut(s)	409, 819, 994
PciI	ACATGT	2 cut(s)	615, 1506
PciSI	GCTCTTC	1 cut(s)	106
PcsI	WCGNNNNNNNCGW	1 cut(s)	1593
PdiI	GCCGGC	1 cut(s)	1100
PdmI	GAANNNNTTC	1 cut(s)	1128
PfeI	GAWTC	8 cut(s)	416, 628, 677, 728, 759, 944, 1052, 1370
PkrI	GCNGC	2 cut(s)	115, 442
PleI	GAGTC	3 cut(s)	883, 1240, 1395
PluTI	GGCGCC	1 cut(s)	1099
PmaCI	CACGTG	1 cut(s)	110
PmeI	GTTTAAAC	1 cut(s)	1584
PmlI	CACGTG	1 cut(s)	110
PpsI	GAGTC	3 cut(s)	883, 1240, 1395
Ppu21I	YACGTR	1 cut(s)	110
PscI	ACATGT	2 cut(s)	615, 1506
Psp124BI	GAGCTC	1 cut(s)	378
Psp6I	CCWGG	1 cut(s)	345
PspCI	CACGTG	1 cut(s)	110
PspFI	CCCAGC	1 cut(s)	1354
PspGI	CCWGG	1 cut(s)	345
PspN4I	GGNNCC	6 cut(s)	44, 241, 268, 523, 744, 1097
PspPI	GGNCC	2 cut(s)	42, 240
PstNI	CAGNNNCTG	3 cut(s)	485, 1349, 1361
PsuI	RGATCY	3 cut(s)	266, 982, 1109
PvuII	CAGCTG	1 cut(s)	140
RsaI	GTAC	4 cut(s)	436, 448, 699, 744
RsaNI	GTAC	4 cut(s)	435, 447, 698, 743
RseI	CAYNNNNRTG	3 cut(s)	813, 1191, 1419
SacI	GAGCTC	1 cut(s)	378
SapI	GCTCTTC	1 cut(s)	106
SaqAI	TTAA	5 cut(s)	323, 456, 1383, 1530, 1583
SatI	GCNGC	2 cut(s)	114, 441
Sau3AI	GATC	7 cut(s)	130, 172, 219, 266, 982, 1036, 1109
Sau96I	GGNCC	2 cut(s)	42, 240
ScaI	AGTACT	1 cut(s)	448
SchI	GAGTC	3 cut(s)	884, 1241, 1396
ScrFI	CCNGG	5 cut(s)	347, 788, 1064, 1190, 1191
SduI	GDGCHC	4 cut(s)	14, 378, 1205, 1243
SfaNI	GCATC	4 cut(s)	499, 898, 1367, 1414
SfcI	CTRYAG	1 cut(s)	1176
SfoI	GGCGCC	1 cut(s)	1097
SinI	GGWCC	1 cut(s)	240
SmaI	CCCGGG	1 cut(s)	1191
SmiMI	CAYNNNNRTG	3 cut(s)	813, 1191, 1419
SmlI	CTYRAG	2 cut(s)	1084, 1382
SmoI	CTYRAG	2 cut(s)	1084, 1382
Sse9I	AATT	9 cut(s)	166, 261, 307, 598, 1182, 1260, 1302, 1406, 1473
SsiI	CCGC	7 cut(s)	55, 60, 93, 114, 475, 525, 1159
SspDI	GGCGCC	1 cut(s)	1095
SspMI	CTAG	6 cut(s)	15, 420, 444, 986, 1107, 1236
SstI	GAGCTC	1 cut(s)	378
StyD4I	CCNGG	5 cut(s)	345, 786, 1062, 1188, 1189
TaaI	ACNGT	4 cut(s)	872, 1332, 1434, 1592
TaiI	ACGT	2 cut(s)	112, 210
TaqI	TCGA	5 cut(s)	8, 1256, 1287, 1477, 1561
TasI	AATT	9 cut(s)	166, 261, 307, 598, 1182, 1260, 1302, 1406, 1473
TatI	WGTACW	2 cut(s)	434, 446
TauI	GCSGC	1 cut(s)	116
TfiI	GAWTC	8 cut(s)	416, 628, 677, 728, 759, 944, 1052, 1370
Tru1I	TTAA	5 cut(s)	323, 456, 1383, 1530, 1583
Tru9I	TTAA	5 cut(s)	323, 456, 1383, 1530, 1583
TscAI	CASTG	5 cut(s)	195, 232, 982, 1335, 1439
TseFI	GTSAC	2 cut(s)	1320, 1388
TseI	GCWGC	1 cut(s)	440
Tsp45I	GTSAC	2 cut(s)	1320, 1388
TspDTI	ATGAA	8 cut(s)	429, 674, 797, 983, 1203, 1295, 1314, 1362
TspGWI	ACGGA	2 cut(s)	610, 1585
TspMI	CCCGGG	1 cut(s)	1189
TspRI	CASTG	5 cut(s)	195, 232, 982, 1335, 1439
Vha464I	CTTAAG	1 cut(s)	1382
VpaK11BI	GGWCC	1 cut(s)	240
XagI	CCTNNNNNAGG	1 cut(s)	737
XapI	RAATTY	4 cut(s)	598, 1182, 1302, 1473
XbaI	TCTAGA	1 cut(s)	1106
XceI	RCATGY	3 cut(s)	619, 1201, 1510
XmaI	CCCGGG	1 cut(s)	1189
XmnI	GAANNNNTTC	1 cut(s)	1128
XspI	CTAG	6 cut(s)	15, 420, 444, 986, 1107, 1236
ZrmI	AGTACT	1 cut(s)	448
Zsp2I	ATGCAT	1 cut(s)	913

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.