DNA polymerase alpha chain like domain
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G13840 |
| fragaria_vesca | FvH4_1g25470 FvH4_1g25470 FvH4_1g25470 FvH4_1g25470 FvH4_1g25470 FvH4_1g25470 FvH4_1g25470 |
| malus_domestica | MD10G1052200.v1.1 |
| prunus_persica | Prupe.8G062500_v2.0.a1 Prupe.8G062500_v2.0.a1 |
| pyrus_communis | pycom10g03690 pycom15g12500 |
| rosa_chinensis | RchiOBHm_Chr2g0123601 |
| rosa_laevigata | RLG00000018759 |
| rosa_multiflora | Rmu_ssc0000091.1_g000015 |
| rosa_roxburghii | Rroxscaffold_2G00120560 |
| rosa_rugosa | Rorug02G0246400 |
| rosa_samantha | Rh2AG305600 Rh2BG313500 Rh2CG291700 Rh2DG329400 |
| rosa_wichuraiana | Rw2G024480 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 2 cut(s) | 701, 775 |
| Acc65I | GGTACC | 1 cut(s) | 95 |
| AccB1I | GGYRCC | 1 cut(s) | 95 |
| AccII | CGCG | 3 cut(s) | 585, 696, 698 |
| AciI | CCGC | 4 cut(s) | 519, 694, 745, 1206 |
| AcoI | YGGCCR | 1 cut(s) | 1091 |
| AcsI | RAATTY | 1 cut(s) | 452 |
| AcuI | CTGAAG | 1 cut(s) | 1131 |
| AfaI | GTAC | 5 cut(s) | 97, 222, 448, 492, 953 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 700 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 373 |
| AjnI | CCWGG | 4 cut(s) | 393, 430, 673, 1326 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 454, 486 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1314, 1346 |
| Alw26I | GTCTC | 4 cut(s) | 240, 604, 649, 673 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 516 |
| AoxI | GGCC | 5 cut(s) | 390, 521, 690, 1091, 1278 |
| ApeKI | GCWGC | 6 cut(s) | 191, 401, 513, 516, 1203, 1227 |
| ApoI | RAATTY | 1 cut(s) | 452 |
| AseI | ATTAAT | 1 cut(s) | 1311 |
| Asp718I | GGTACC | 1 cut(s) | 95 |
| AspLEI | GCGC | 3 cut(s) | 587, 698, 700 |
| AspS9I | GGNCC | 4 cut(s) | 391, 521, 691, 764 |
| AsuHPI | GGTGA | 4 cut(s) | 20, 352, 886, 1037 |
| AsuNHI | GCTAGC | 1 cut(s) | 844 |
| AvaII | GGWCC | 1 cut(s) | 764 |
| AxyI | CCTNAGG | 1 cut(s) | 387 |
| BanI | GGYRCC | 1 cut(s) | 95 |
| BanII | GRGCYC | 2 cut(s) | 62, 328 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 792, 824 |
| BbsI | GAAGAC | 2 cut(s) | 899, 1227 |
| BbvI | GCAGC | 6 cut(s) | 203, 413, 503, 525, 1190, 1214 |
| BccI | CCATC | 5 cut(s) | 284, 563, 752, 887, 929 |
| BceAI | ACGGC | 2 cut(s) | 28, 1265 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 649, 683 |
| BciT130I | CCWGG | 4 cut(s) | 395, 432, 675, 1328 |
| BcoDI | GTCTC | 4 cut(s) | 240, 604, 649, 673 |
| BfaI | CTAG | 3 cut(s) | 845, 962, 1160 |
| BfmI | CTRYAG | 2 cut(s) | 189, 1335 |
| BfuAI | ACCTGC | 2 cut(s) | 701, 775 |
| BglII | AGATCT | 1 cut(s) | 538 |
| BisI | GCNGC | 7 cut(s) | 192, 402, 514, 517, 1204, 1207, 1228 |
| BlsI | GCNGC | 7 cut(s) | 193, 403, 515, 518, 1205, 1208, 1229 |
| Bme1390I | CCNGG | 4 cut(s) | 395, 432, 675, 1328 |
| Bme18I | GGWCC | 1 cut(s) | 764 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 373 |
| BmgT120I | GGNCC | 4 cut(s) | 391, 521, 691, 764 |
| BmiI | GGNNCC | 4 cut(s) | 97, 486, 1143, 1332 |
| BmrFI | CCNGG | 4 cut(s) | 395, 432, 675, 1328 |
| BmtI | GCTAGC | 1 cut(s) | 848 |
| BpiI | GAAGAC | 2 cut(s) | 899, 1227 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 629, 661 |
| BpuEI | CTTGAG | 2 cut(s) | 602, 631 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1155 |
| BsaI | GGTCTC | 1 cut(s) | 604 |
| BsaJI | CCNNGG | 5 cut(s) | 232, 393, 674, 854, 1137 |
| BsaWI | WCCGGW | 1 cut(s) | 871 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 237, 267 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 700 |
| Bse1I | ACTGG | 3 cut(s) | 488, 948, 1055 |
| Bse21I | CCTNAGG | 1 cut(s) | 387 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1155 |
| BseBI | CCWGG | 4 cut(s) | 395, 432, 675, 1328 |
| BseDI | CCNNGG | 5 cut(s) | 232, 393, 674, 854, 1137 |
| BseGI | GGATG | 3 cut(s) | 495, 574, 850 |
| BseJI | GATNNNNATC | 1 cut(s) | 1155 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 700 |
| BseMII | CTCAG | 2 cut(s) | 378, 1023 |
| BseNI | ACTGG | 3 cut(s) | 488, 948, 1055 |
| BsePI | GCGCGC | 1 cut(s) | 696 |
| BseRI | GAGGAG | 2 cut(s) | 480, 1154 |
| BseXI | GCAGC | 6 cut(s) | 203, 413, 503, 525, 1190, 1214 |
| BseYI | CCCAGC | 1 cut(s) | 1036 |
| Bsh1236I | CGCG | 3 cut(s) | 585, 696, 698 |
| BshFI | GGCC | 5 cut(s) | 392, 523, 692, 1093, 1280 |
| BshNI | GGYRCC | 1 cut(s) | 95 |
| BsiSI | CCGG | 1 cut(s) | 872 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 700 |
| BsmAI | GTCTC | 4 cut(s) | 240, 604, 649, 673 |
| BsmI | GAATGC | 1 cut(s) | 268 |
| BsnI | GGCC | 5 cut(s) | 392, 523, 692, 1093, 1280 |
| Bso31I | GGTCTC | 1 cut(s) | 604 |
| Bsp1286I | GDGCHC | 2 cut(s) | 62, 328 |
| Bsp1407I | TGTACA | 1 cut(s) | 951 |
| Bsp143I | GATC | 5 cut(s) | 361, 538, 958, 976, 1222 |
| BspACI | CCGC | 4 cut(s) | 519, 694, 745, 1206 |
| BspANI | GGCC | 5 cut(s) | 392, 523, 692, 1093, 1280 |
| BspCNI | CTCAG | 2 cut(s) | 379, 1024 |
| BspFNI | CGCG | 3 cut(s) | 585, 696, 698 |
| BspHI | TCATGA | 1 cut(s) | 364 |
| BspLI | GGNNCC | 4 cut(s) | 97, 486, 1143, 1332 |
| BspMAI | CTGCAG | 1 cut(s) | 193 |
| BspMI | ACCTGC | 2 cut(s) | 701, 775 |
| BspOI | GCTAGC | 1 cut(s) | 848 |
| BspQI | GCTCTTC | 1 cut(s) | 221 |
| BspT107I | GGYRCC | 1 cut(s) | 95 |
| BspTNI | GGTCTC | 1 cut(s) | 604 |
| BsrGI | TGTACA | 1 cut(s) | 951 |
| BsrI | ACTGG | 3 cut(s) | 488, 948, 1055 |
| BssECI | CCNNGG | 5 cut(s) | 232, 393, 674, 854, 1137 |
| BssHII | GCGCGC | 1 cut(s) | 696 |
| BssMI | GATC | 5 cut(s) | 361, 538, 958, 976, 1222 |
| BssT1I | CCWWGG | 2 cut(s) | 232, 854 |
| Bst2UI | CCWGG | 4 cut(s) | 395, 432, 675, 1328 |
| Bst4CI | ACNGT | 2 cut(s) | 41, 956 |
| Bst6I | CTCTTC | 3 cut(s) | 221, 232, 1248 |
| BstAUI | TGTACA | 1 cut(s) | 951 |
| BstC8I | GCNNGC | 5 cut(s) | 521, 658, 694, 698, 846 |
| BstDEI | CTNAG | 2 cut(s) | 387, 1032 |
| BstEII | GGTNACC | 1 cut(s) | 874 |
| BstF5I | GGATG | 3 cut(s) | 495, 574, 850 |
| BstFNI | CGCG | 3 cut(s) | 585, 696, 698 |
| BstHHI | GCGC | 3 cut(s) | 587, 698, 700 |
| BstKTI | GATC | 5 cut(s) | 364, 541, 961, 979, 1225 |
| BstMAI | GTCTC | 4 cut(s) | 240, 604, 649, 673 |
| BstMBI | GATC | 5 cut(s) | 361, 538, 958, 976, 1222 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 398, 622, 803, 845, 1066 |
| BstNI | CCWGG | 4 cut(s) | 395, 432, 675, 1328 |
| BstNSI | RCATGY | 3 cut(s) | 616, 644, 689 |
| BstPI | GGTNACC | 1 cut(s) | 874 |
| BstSCI | CCNGG | 4 cut(s) | 393, 430, 673, 1326 |
| BstSFI | CTRYAG | 2 cut(s) | 189, 1335 |
| BstUI | CGCG | 3 cut(s) | 585, 696, 698 |
| BstV1I | GCAGC | 6 cut(s) | 203, 413, 503, 525, 1190, 1214 |
| BstV2I | GAAGAC | 2 cut(s) | 899, 1227 |
| BstX2I | RGATCY | 1 cut(s) | 538 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 316 |
| BstYI | RGATCY | 1 cut(s) | 538 |
| Bsu36I | CCTNAGG | 1 cut(s) | 387 |
| BsuRI | GGCC | 5 cut(s) | 392, 523, 692, 1093, 1280 |
| BtsCI | GGATG | 3 cut(s) | 495, 574, 850 |
| BtsI | GCAGTG | 3 cut(s) | 176, 186, 292 |
| BtsIMutI | CAGTG | 5 cut(s) | 176, 186, 292, 961, 1062 |
| BveI | ACCTGC | 2 cut(s) | 701, 775 |
| Cac8I | GCNNGC | 5 cut(s) | 521, 658, 694, 698, 846 |
| CaiI | CAGNNNCTG | 1 cut(s) | 516 |
| CciI | TCATGA | 1 cut(s) | 364 |
| CfoI | GCGC | 3 cut(s) | 587, 698, 700 |
| Cfr13I | GGNCC | 4 cut(s) | 391, 521, 691, 764 |
| Csp6I | GTAC | 5 cut(s) | 96, 221, 447, 491, 952 |
| CviAII | CATG | 8 cut(s) | 329, 365, 613, 641, 686, 1007, 1022, 1301 |
| CviQI | GTAC | 5 cut(s) | 96, 221, 447, 491, 952 |
| DdeI | CTNAG | 2 cut(s) | 387, 1032 |
| DpnI | GATC | 5 cut(s) | 363, 540, 960, 978, 1224 |
| DpnII | GATC | 5 cut(s) | 361, 538, 958, 976, 1222 |
| DriI | GACNNNNNGTC | 1 cut(s) | 373 |
| EaeI | YGGCCR | 1 cut(s) | 1091 |
| Eam1104I | CTCTTC | 3 cut(s) | 221, 232, 1248 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 373 |
| EarI | CTCTTC | 3 cut(s) | 221, 232, 1248 |
| Eco130I | CCWWGG | 2 cut(s) | 232, 854 |
| Eco24I | GRGCYC | 2 cut(s) | 62, 328 |
| Eco31I | GGTCTC | 1 cut(s) | 604 |
| Eco47I | GGWCC | 1 cut(s) | 764 |
| Eco57I | CTGAAG | 1 cut(s) | 1131 |
| Eco81I | CCTNAGG | 1 cut(s) | 387 |
| Eco91I | GGTNACC | 1 cut(s) | 874 |
| EcoO109I | RGGNCCY | 1 cut(s) | 391 |
| EcoO65I | GGTNACC | 1 cut(s) | 874 |
| EcoRII | CCWGG | 4 cut(s) | 393, 430, 673, 1326 |
| EcoT14I | CCWWGG | 2 cut(s) | 232, 854 |
| EcoT38I | GRGCYC | 2 cut(s) | 62, 328 |
| ErhI | CCWWGG | 2 cut(s) | 232, 854 |
| FaeI | CATG | 8 cut(s) | 332, 368, 616, 644, 689, 1010, 1025, 1304 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 891, 923 |
| FatI | CATG | 8 cut(s) | 328, 364, 612, 640, 685, 1006, 1021, 1300 |
| FauI | CCCGC | 3 cut(s) | 512, 701, 752 |
| Fnu4HI | GCNGC | 7 cut(s) | 192, 402, 514, 517, 1204, 1207, 1228 |
| FokI | GGATG | 3 cut(s) | 482, 581, 837 |
| FriOI | GRGCYC | 2 cut(s) | 62, 328 |
| Fsp4HI | GCNGC | 7 cut(s) | 192, 402, 514, 517, 1204, 1207, 1228 |
| FspBI | CTAG | 3 cut(s) | 845, 962, 1160 |
| GlaI | GCGC | 3 cut(s) | 586, 697, 699 |
| GluI | GCNGC | 7 cut(s) | 192, 402, 514, 517, 1204, 1207, 1228 |
| GsaI | CCCAGC | 1 cut(s) | 1040 |
| HaeIII | GGCC | 5 cut(s) | 392, 523, 692, 1093, 1280 |
| HapII | CCGG | 1 cut(s) | 872 |
| HhaI | GCGC | 3 cut(s) | 587, 698, 700 |
| Hin1II | CATG | 8 cut(s) | 332, 368, 616, 644, 689, 1010, 1025, 1304 |
| Hin6I | GCGC | 3 cut(s) | 585, 696, 698 |
| HinP1I | GCGC | 3 cut(s) | 585, 696, 698 |
| HincII | GTYRAC | 1 cut(s) | 1245 |
| HindII | GTYRAC | 1 cut(s) | 1245 |
| HindIII | AAGCTT | 4 cut(s) | 168, 735, 986, 1292 |
| HinfI | GANTC | 4 cut(s) | 470, 666, 1028, 1323 |
| HpaII | CCGG | 1 cut(s) | 872 |
| HphI | GGTGA | 4 cut(s) | 20, 352, 886, 1037 |
| Hpy166II | GTNNAC | 5 cut(s) | 493, 764, 952, 1048, 1245 |
| Hpy188I | TCNGA | 7 cut(s) | 357, 408, 475, 1000, 1033, 1150, 1286 |
| Hpy188III | TCNNGA | 2 cut(s) | 365, 542 |
| Hpy8I | GTNNAC | 5 cut(s) | 493, 764, 952, 1048, 1245 |
| Hpy99I | CGWCG | 1 cut(s) | 781 |
| HpyAV | CCTTC | 5 cut(s) | 192, 315, 1061, 1155, 1177 |
| HpyCH4III | ACNGT | 2 cut(s) | 41, 956 |
| HpyCH4V | TGCA | 8 cut(s) | 191, 268, 285, 503, 656, 685, 770, 1268 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 398, 622, 803, 845, 1066 |
| HpyF3I | CTNAG | 2 cut(s) | 387, 1032 |
| Hsp92II | CATG | 8 cut(s) | 332, 368, 616, 644, 689, 1010, 1025, 1304 |
| HspAI | GCGC | 3 cut(s) | 585, 696, 698 |
| KpnI | GGTACC | 1 cut(s) | 99 |
| Kzo9I | GATC | 5 cut(s) | 361, 538, 958, 976, 1222 |
| LguI | GCTCTTC | 1 cut(s) | 221 |
| LmnI | GCTCC | 3 cut(s) | 637, 676, 1141 |
| Lsp1109I | GCAGC | 6 cut(s) | 203, 413, 503, 525, 1190, 1214 |
| MaeI | CTAG | 3 cut(s) | 845, 962, 1160 |
| MaeIII | GTNAC | 3 cut(s) | 8, 874, 1070 |
| MalI | GATC | 5 cut(s) | 363, 540, 960, 978, 1224 |
| MboI | GATC | 5 cut(s) | 361, 538, 958, 976, 1222 |
| MflI | RGATCY | 1 cut(s) | 538 |
| MhlI | GDGCHC | 2 cut(s) | 62, 328 |
| MluCI | AATT | 7 cut(s) | 50, 263, 426, 452, 1095, 1129, 1308 |
| MlyI | GAGTC | 2 cut(s) | 675, 1037 |
| MmeI | TCCRAC | 1 cut(s) | 69 |
| MseI | TTAA | 5 cut(s) | 24, 630, 1080, 1155, 1311 |
| MslI | CAYNNNNRTG | 1 cut(s) | 333 |
| MspA1I | CMGCKG | 1 cut(s) | 516 |
| MspI | CCGG | 1 cut(s) | 872 |
| MspR9I | CCNGG | 4 cut(s) | 395, 432, 675, 1328 |
| Mva1269I | GAATGC | 1 cut(s) | 268 |
| MvaI | CCWGG | 4 cut(s) | 395, 432, 675, 1328 |
| MvnI | CGCG | 3 cut(s) | 585, 696, 698 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 398, 622, 803, 845, 1066 |
| NdeII | GATC | 5 cut(s) | 361, 538, 958, 976, 1222 |
| NheI | GCTAGC | 1 cut(s) | 844 |
| NlaIII | CATG | 8 cut(s) | 332, 368, 616, 644, 689, 1010, 1025, 1304 |
| NlaIV | GGNNCC | 4 cut(s) | 97, 486, 1143, 1332 |
| NmeAIII | GCCGAG | 2 cut(s) | 1069, 1162 |
| NmuCI | GTSAC | 3 cut(s) | 8, 874, 1070 |
| NspI | RCATGY | 3 cut(s) | 616, 644, 689 |
| PagI | TCATGA | 1 cut(s) | 364 |
| PauI | GCGCGC | 1 cut(s) | 696 |
| PciSI | GCTCTTC | 1 cut(s) | 221 |
| PctI | GAATGC | 1 cut(s) | 268 |
| PfeI | GAWTC | 2 cut(s) | 470, 1323 |
| PkrI | GCNGC | 7 cut(s) | 193, 403, 515, 518, 1205, 1208, 1229 |
| PleI | GAGTC | 2 cut(s) | 674, 1036 |
| PpsI | GAGTC | 2 cut(s) | 674, 1036 |
| PshBI | ATTAAT | 1 cut(s) | 1311 |
| Psp6I | CCWGG | 4 cut(s) | 393, 430, 673, 1326 |
| PspEI | GGTNACC | 1 cut(s) | 874 |
| PspFI | CCCAGC | 1 cut(s) | 1036 |
| PspGI | CCWGG | 4 cut(s) | 393, 430, 673, 1326 |
| PspN4I | GGNNCC | 4 cut(s) | 97, 486, 1143, 1332 |
| PspPI | GGNCC | 4 cut(s) | 391, 521, 691, 764 |
| PstI | CTGCAG | 1 cut(s) | 193 |
| PstNI | CAGNNNCTG | 1 cut(s) | 516 |
| PsuI | RGATCY | 1 cut(s) | 538 |
| PteI | GCGCGC | 1 cut(s) | 696 |
| PvuII | CAGCTG | 1 cut(s) | 516 |
| RsaI | GTAC | 5 cut(s) | 97, 222, 448, 492, 953 |
| RsaNI | GTAC | 5 cut(s) | 96, 221, 447, 491, 952 |
| RseI | CAYNNNNRTG | 1 cut(s) | 333 |
| SapI | GCTCTTC | 1 cut(s) | 221 |
| SaqAI | TTAA | 5 cut(s) | 24, 630, 1080, 1155, 1311 |
| SatI | GCNGC | 7 cut(s) | 192, 402, 514, 517, 1204, 1207, 1228 |
| Sau3AI | GATC | 5 cut(s) | 361, 538, 958, 976, 1222 |
| Sau96I | GGNCC | 4 cut(s) | 391, 521, 691, 764 |
| SchI | GAGTC | 2 cut(s) | 675, 1037 |
| ScrFI | CCNGG | 4 cut(s) | 395, 432, 675, 1328 |
| SduI | GDGCHC | 2 cut(s) | 62, 328 |
| SfcI | CTRYAG | 2 cut(s) | 189, 1335 |
| SinI | GGWCC | 1 cut(s) | 764 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 333 |
| SmlI | CTYRAG | 2 cut(s) | 617, 646 |
| SmoI | CTYRAG | 2 cut(s) | 617, 646 |
| Sse9I | AATT | 7 cut(s) | 50, 263, 426, 452, 1095, 1129, 1308 |
| SsiI | CCGC | 4 cut(s) | 519, 694, 745, 1206 |
| SspMI | CTAG | 3 cut(s) | 845, 962, 1160 |
| StyD4I | CCNGG | 4 cut(s) | 393, 430, 673, 1326 |
| StyI | CCWWGG | 2 cut(s) | 232, 854 |
| TaaI | ACNGT | 2 cut(s) | 41, 956 |
| TaqI | TCGA | 4 cut(s) | 207, 756, 776, 1275 |
| TasI | AATT | 7 cut(s) | 50, 263, 426, 452, 1095, 1129, 1308 |
| TatI | WGTACW | 3 cut(s) | 446, 490, 951 |
| TauI | GCSGC | 1 cut(s) | 1209 |
| TfiI | GAWTC | 2 cut(s) | 470, 1323 |
| Tru1I | TTAA | 5 cut(s) | 24, 630, 1080, 1155, 1311 |
| Tru9I | TTAA | 5 cut(s) | 24, 630, 1080, 1155, 1311 |
| TscAI | CASTG | 5 cut(s) | 183, 193, 292, 961, 1062 |
| TseFI | GTSAC | 3 cut(s) | 8, 874, 1070 |
| TseI | GCWGC | 6 cut(s) | 191, 401, 513, 516, 1203, 1227 |
| Tsp45I | GTSAC | 3 cut(s) | 8, 874, 1070 |
| TspDTI | ATGAA | 1 cut(s) | 1266 |
| TspRI | CASTG | 5 cut(s) | 183, 193, 292, 961, 1062 |
| VpaK11BI | GGWCC | 1 cut(s) | 764 |
| VspI | ATTAAT | 1 cut(s) | 1311 |
| XapI | RAATTY | 1 cut(s) | 452 |
| XceI | RCATGY | 3 cut(s) | 616, 644, 689 |
| XspI | CTAG | 3 cut(s) | 845, 962, 1160 |