Prupe.8G062500_v2.0.a1

DNA polymerase alpha chain like domain

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
Physical Location & Seq
Forward (+)
9016125 .. 9022175
6051 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G062500.2

Sequence Viewer

Length: 1350 bp
ATGGTGGGTGACGGCTTTATCATTAACCACAGCACGAACAGTTCCAACAAATTAGAGAGCCCAAAGAAAACAAAGAAGAAGAAGAAGCGTGGTGGTACCAAGAAGAAGATGACCACCGAGCAGACTTTGGCTTTCAAATCTGTGAGTGAATGGGTTTTCTTGGAACAAGCTTCTTCACTGCCTTCCACTGCAGCTTCTTGTGTTGTCGATGATTTTGGGGTACAGAAGAGCCTTGGAAGAGGTGGAGACAAGGTAGTGTTTGAATTGCATTCACATTCAAAATGCAGTGATGGGTTTCTTTCGCCTTCCAAGTTGGTGGAGAGGGCTCATGGAAATGGGGTGAAAGTTCTTGCTCTGACAGATCATGACACGATGTCTGGCATACCTGAGGCCCTGGAAGCAGCTCGGAGATTTCGCATAAAGATAATTCCAGGTGTTGAAATCAGTACAAAATTCTACCCAAGAGGAGATTCTGAACCAGAGGAACCAGTACACATCCTTGCATATTACAGCAGCTGCGGGCCAACAAGTTTTGAAGATCTGGAAAAGTTCTTGTCTAATATAAGGGATGGTCGTTATCTTCGCGCAAAAACTATGGTCTCCAAACTGAACATGCTCAAGTTGCCTGTTAAATGGGAGCATGTCTCAAGGATTGCAGGCAAGGGAGTCGCTCCTGGGAGACTGCATGTGGCCCGCGCGCTGGTTGAAGCAGGTTATGTGGAAAACCTGAAACAAGCTTTTTCCCGCTATCTTTTCGATGGTGGACCTGCATACTCGACGGGAAGCGAACCTCTGGCAGAAGAAGCAATACAAATGATTTGTGATACAGGAGGTGTGGCTGTGCTAGCTCATCCTTGGTCATTGAAAAATCCGGTGACCATCATAAAAAGGTTGAAAGAAGCTGGTCTTCACGGGATTGAAGTTTATAGAAGTGATGGAAAACTGGCTGTGTACAGTGATCTAGCTGAAACTTATGATCTTTTGAAGCTTGGAGGGTCAGATTATCATGGGAGAGGTGGGCATGGTGAGTCTGAGCTGGGTAGTGTGAACCTTCCAGTGCTGGTTTTGCGTGACTTTCTTAAAGTAGCTCGGCCAATTTGGTGTCGTTCCATTAGGCACATTTTAGAAAATTATGCCGAGGAGCCTTCAGATTTTAATCTAGCAAAGATTACAAGGTTTGGGAAGGGAGTTTCCCCCGTAAGCTGCGGCAAGGATTTGATTGATCGCTGCTTGTCTTCGTGGTTGACAAATGAAGAGAGGCAAAATGCAGTTTTCGAGGCCGTCAGATTGAAGCTTTCCCATGTTTCAATTAATCAGGGAGGAATCCAGGTTCCTATAGAGAGTAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

450

Amino Acids

49.37

Weight (kDa)

9.07

Isoelectric Point (pI)

40.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 701, 775
Acc65I GGTACC 1 cut(s) 95
AccB1I GGYRCC 1 cut(s) 95
AccII CGCG 3 cut(s) 585, 696, 698
AciI CCGC 4 cut(s) 519, 694, 745, 1206
AcoI YGGCCR 1 cut(s) 1091
AcsI RAATTY 1 cut(s) 452
AcuI CTGAAG 1 cut(s) 1131
AfaI GTAC 5 cut(s) 97, 222, 448, 492, 953
AfiI CCNNNNNNNGG 1 cut(s) 700
AhdI GACNNNNNGTC 1 cut(s) 373
AjnI CCWGG 4 cut(s) 393, 430, 673, 1326
AjuI GAANNNNNNNTTGG 2 cut(s) 454, 486
AloI GAACNNNNNNTCC 2 cut(s) 1314, 1346
Alw26I GTCTC 4 cut(s) 240, 604, 649, 673
AlwNI CAGNNNCTG 1 cut(s) 516
AoxI GGCC 5 cut(s) 390, 521, 690, 1091, 1278
ApeKI GCWGC 6 cut(s) 191, 401, 513, 516, 1203, 1227
ApoI RAATTY 1 cut(s) 452
AseI ATTAAT 1 cut(s) 1311
Asp718I GGTACC 1 cut(s) 95
AspLEI GCGC 3 cut(s) 587, 698, 700
AspS9I GGNCC 4 cut(s) 391, 521, 691, 764
AsuHPI GGTGA 4 cut(s) 20, 352, 886, 1037
AsuNHI GCTAGC 1 cut(s) 844
AvaII GGWCC 1 cut(s) 764
AxyI CCTNAGG 1 cut(s) 387
BanI GGYRCC 1 cut(s) 95
BanII GRGCYC 2 cut(s) 62, 328
BarI GAAGNNNNNNTAC 2 cut(s) 792, 824
BbsI GAAGAC 2 cut(s) 899, 1227
BbvI GCAGC 6 cut(s) 203, 413, 503, 525, 1190, 1214
BccI CCATC 5 cut(s) 284, 563, 752, 887, 929
BceAI ACGGC 2 cut(s) 28, 1265
BcgI CGANNNNNNTGC 2 cut(s) 649, 683
BciT130I CCWGG 4 cut(s) 395, 432, 675, 1328
BcoDI GTCTC 4 cut(s) 240, 604, 649, 673
BfaI CTAG 3 cut(s) 845, 962, 1160
BfmI CTRYAG 2 cut(s) 189, 1335
BfuAI ACCTGC 2 cut(s) 701, 775
BglII AGATCT 1 cut(s) 538
BisI GCNGC 7 cut(s) 192, 402, 514, 517, 1204, 1207, 1228
BlsI GCNGC 7 cut(s) 193, 403, 515, 518, 1205, 1208, 1229
Bme1390I CCNGG 4 cut(s) 395, 432, 675, 1328
Bme18I GGWCC 1 cut(s) 764
BmeRI GACNNNNNGTC 1 cut(s) 373
BmgT120I GGNCC 4 cut(s) 391, 521, 691, 764
BmiI GGNNCC 4 cut(s) 97, 486, 1143, 1332
BmrFI CCNGG 4 cut(s) 395, 432, 675, 1328
BmtI GCTAGC 1 cut(s) 848
BpiI GAAGAC 2 cut(s) 899, 1227
BplI GAGNNNNNCTC 2 cut(s) 629, 661
BpuEI CTTGAG 2 cut(s) 602, 631
BsaBI GATNNNNATC 1 cut(s) 1155
BsaI GGTCTC 1 cut(s) 604
BsaJI CCNNGG 5 cut(s) 232, 393, 674, 854, 1137
BsaWI WCCGGW 1 cut(s) 871
BsaXI ACNNNNNCTCC 2 cut(s) 237, 267
Bsc4I CCNNNNNNNGG 1 cut(s) 700
Bse1I ACTGG 3 cut(s) 488, 948, 1055
Bse21I CCTNAGG 1 cut(s) 387
Bse8I GATNNNNATC 1 cut(s) 1155
BseBI CCWGG 4 cut(s) 395, 432, 675, 1328
BseDI CCNNGG 5 cut(s) 232, 393, 674, 854, 1137
BseGI GGATG 3 cut(s) 495, 574, 850
BseJI GATNNNNATC 1 cut(s) 1155
BseLI CCNNNNNNNGG 1 cut(s) 700
BseMII CTCAG 2 cut(s) 378, 1023
BseNI ACTGG 3 cut(s) 488, 948, 1055
BsePI GCGCGC 1 cut(s) 696
BseRI GAGGAG 2 cut(s) 480, 1154
BseXI GCAGC 6 cut(s) 203, 413, 503, 525, 1190, 1214
BseYI CCCAGC 1 cut(s) 1036
Bsh1236I CGCG 3 cut(s) 585, 696, 698
BshFI GGCC 5 cut(s) 392, 523, 692, 1093, 1280
BshNI GGYRCC 1 cut(s) 95
BsiSI CCGG 1 cut(s) 872
BslI CCNNNNNNNGG 1 cut(s) 700
BsmAI GTCTC 4 cut(s) 240, 604, 649, 673
BsmI GAATGC 1 cut(s) 268
BsnI GGCC 5 cut(s) 392, 523, 692, 1093, 1280
Bso31I GGTCTC 1 cut(s) 604
Bsp1286I GDGCHC 2 cut(s) 62, 328
Bsp1407I TGTACA 1 cut(s) 951
Bsp143I GATC 5 cut(s) 361, 538, 958, 976, 1222
BspACI CCGC 4 cut(s) 519, 694, 745, 1206
BspANI GGCC 5 cut(s) 392, 523, 692, 1093, 1280
BspCNI CTCAG 2 cut(s) 379, 1024
BspFNI CGCG 3 cut(s) 585, 696, 698
BspHI TCATGA 1 cut(s) 364
BspLI GGNNCC 4 cut(s) 97, 486, 1143, 1332
BspMAI CTGCAG 1 cut(s) 193
BspMI ACCTGC 2 cut(s) 701, 775
BspOI GCTAGC 1 cut(s) 848
BspQI GCTCTTC 1 cut(s) 221
BspT107I GGYRCC 1 cut(s) 95
BspTNI GGTCTC 1 cut(s) 604
BsrGI TGTACA 1 cut(s) 951
BsrI ACTGG 3 cut(s) 488, 948, 1055
BssECI CCNNGG 5 cut(s) 232, 393, 674, 854, 1137
BssHII GCGCGC 1 cut(s) 696
BssMI GATC 5 cut(s) 361, 538, 958, 976, 1222
BssT1I CCWWGG 2 cut(s) 232, 854
Bst2UI CCWGG 4 cut(s) 395, 432, 675, 1328
Bst4CI ACNGT 2 cut(s) 41, 956
Bst6I CTCTTC 3 cut(s) 221, 232, 1248
BstAUI TGTACA 1 cut(s) 951
BstC8I GCNNGC 5 cut(s) 521, 658, 694, 698, 846
BstDEI CTNAG 2 cut(s) 387, 1032
BstEII GGTNACC 1 cut(s) 874
BstF5I GGATG 3 cut(s) 495, 574, 850
BstFNI CGCG 3 cut(s) 585, 696, 698
BstHHI GCGC 3 cut(s) 587, 698, 700
BstKTI GATC 5 cut(s) 364, 541, 961, 979, 1225
BstMAI GTCTC 4 cut(s) 240, 604, 649, 673
BstMBI GATC 5 cut(s) 361, 538, 958, 976, 1222
BstMWI GCNNNNNNNGC 5 cut(s) 398, 622, 803, 845, 1066
BstNI CCWGG 4 cut(s) 395, 432, 675, 1328
BstNSI RCATGY 3 cut(s) 616, 644, 689
BstPI GGTNACC 1 cut(s) 874
BstSCI CCNGG 4 cut(s) 393, 430, 673, 1326
BstSFI CTRYAG 2 cut(s) 189, 1335
BstUI CGCG 3 cut(s) 585, 696, 698
BstV1I GCAGC 6 cut(s) 203, 413, 503, 525, 1190, 1214
BstV2I GAAGAC 2 cut(s) 899, 1227
BstX2I RGATCY 1 cut(s) 538
BstXI CCANNNNNNTGG 1 cut(s) 316
BstYI RGATCY 1 cut(s) 538
Bsu36I CCTNAGG 1 cut(s) 387
BsuRI GGCC 5 cut(s) 392, 523, 692, 1093, 1280
BtsCI GGATG 3 cut(s) 495, 574, 850
BtsI GCAGTG 3 cut(s) 176, 186, 292
BtsIMutI CAGTG 5 cut(s) 176, 186, 292, 961, 1062
BveI ACCTGC 2 cut(s) 701, 775
Cac8I GCNNGC 5 cut(s) 521, 658, 694, 698, 846
CaiI CAGNNNCTG 1 cut(s) 516
CciI TCATGA 1 cut(s) 364
CfoI GCGC 3 cut(s) 587, 698, 700
Cfr13I GGNCC 4 cut(s) 391, 521, 691, 764
Csp6I GTAC 5 cut(s) 96, 221, 447, 491, 952
CviAII CATG 8 cut(s) 329, 365, 613, 641, 686, 1007, 1022, 1301
CviQI GTAC 5 cut(s) 96, 221, 447, 491, 952
DdeI CTNAG 2 cut(s) 387, 1032
DpnI GATC 5 cut(s) 363, 540, 960, 978, 1224
DpnII GATC 5 cut(s) 361, 538, 958, 976, 1222
DriI GACNNNNNGTC 1 cut(s) 373
EaeI YGGCCR 1 cut(s) 1091
Eam1104I CTCTTC 3 cut(s) 221, 232, 1248
Eam1105I GACNNNNNGTC 1 cut(s) 373
EarI CTCTTC 3 cut(s) 221, 232, 1248
Eco130I CCWWGG 2 cut(s) 232, 854
Eco24I GRGCYC 2 cut(s) 62, 328
Eco31I GGTCTC 1 cut(s) 604
Eco47I GGWCC 1 cut(s) 764
Eco57I CTGAAG 1 cut(s) 1131
Eco81I CCTNAGG 1 cut(s) 387
Eco91I GGTNACC 1 cut(s) 874
EcoO109I RGGNCCY 1 cut(s) 391
EcoO65I GGTNACC 1 cut(s) 874
EcoRII CCWGG 4 cut(s) 393, 430, 673, 1326
EcoT14I CCWWGG 2 cut(s) 232, 854
EcoT38I GRGCYC 2 cut(s) 62, 328
ErhI CCWWGG 2 cut(s) 232, 854
FaeI CATG 8 cut(s) 332, 368, 616, 644, 689, 1010, 1025, 1304
FalI AAGNNNNNCTT 2 cut(s) 891, 923
FatI CATG 8 cut(s) 328, 364, 612, 640, 685, 1006, 1021, 1300
FauI CCCGC 3 cut(s) 512, 701, 752
Fnu4HI GCNGC 7 cut(s) 192, 402, 514, 517, 1204, 1207, 1228
FokI GGATG 3 cut(s) 482, 581, 837
FriOI GRGCYC 2 cut(s) 62, 328
Fsp4HI GCNGC 7 cut(s) 192, 402, 514, 517, 1204, 1207, 1228
FspBI CTAG 3 cut(s) 845, 962, 1160
GlaI GCGC 3 cut(s) 586, 697, 699
GluI GCNGC 7 cut(s) 192, 402, 514, 517, 1204, 1207, 1228
GsaI CCCAGC 1 cut(s) 1040
HaeIII GGCC 5 cut(s) 392, 523, 692, 1093, 1280
HapII CCGG 1 cut(s) 872
HhaI GCGC 3 cut(s) 587, 698, 700
Hin1II CATG 8 cut(s) 332, 368, 616, 644, 689, 1010, 1025, 1304
Hin6I GCGC 3 cut(s) 585, 696, 698
HinP1I GCGC 3 cut(s) 585, 696, 698
HincII GTYRAC 1 cut(s) 1245
HindII GTYRAC 1 cut(s) 1245
HindIII AAGCTT 4 cut(s) 168, 735, 986, 1292
HinfI GANTC 4 cut(s) 470, 666, 1028, 1323
HpaII CCGG 1 cut(s) 872
HphI GGTGA 4 cut(s) 20, 352, 886, 1037
Hpy166II GTNNAC 5 cut(s) 493, 764, 952, 1048, 1245
Hpy188I TCNGA 7 cut(s) 357, 408, 475, 1000, 1033, 1150, 1286
Hpy188III TCNNGA 2 cut(s) 365, 542
Hpy8I GTNNAC 5 cut(s) 493, 764, 952, 1048, 1245
Hpy99I CGWCG 1 cut(s) 781
HpyAV CCTTC 5 cut(s) 192, 315, 1061, 1155, 1177
HpyCH4III ACNGT 2 cut(s) 41, 956
HpyCH4V TGCA 8 cut(s) 191, 268, 285, 503, 656, 685, 770, 1268
HpyF10VI GCNNNNNNNGC 5 cut(s) 398, 622, 803, 845, 1066
HpyF3I CTNAG 2 cut(s) 387, 1032
Hsp92II CATG 8 cut(s) 332, 368, 616, 644, 689, 1010, 1025, 1304
HspAI GCGC 3 cut(s) 585, 696, 698
KpnI GGTACC 1 cut(s) 99
Kzo9I GATC 5 cut(s) 361, 538, 958, 976, 1222
LguI GCTCTTC 1 cut(s) 221
LmnI GCTCC 3 cut(s) 637, 676, 1141
Lsp1109I GCAGC 6 cut(s) 203, 413, 503, 525, 1190, 1214
MaeI CTAG 3 cut(s) 845, 962, 1160
MaeIII GTNAC 3 cut(s) 8, 874, 1070
MalI GATC 5 cut(s) 363, 540, 960, 978, 1224
MboI GATC 5 cut(s) 361, 538, 958, 976, 1222
MflI RGATCY 1 cut(s) 538
MhlI GDGCHC 2 cut(s) 62, 328
MluCI AATT 7 cut(s) 50, 263, 426, 452, 1095, 1129, 1308
MlyI GAGTC 2 cut(s) 675, 1037
MmeI TCCRAC 1 cut(s) 69
MseI TTAA 5 cut(s) 24, 630, 1080, 1155, 1311
MslI CAYNNNNRTG 1 cut(s) 333
MspA1I CMGCKG 1 cut(s) 516
MspI CCGG 1 cut(s) 872
MspR9I CCNGG 4 cut(s) 395, 432, 675, 1328
Mva1269I GAATGC 1 cut(s) 268
MvaI CCWGG 4 cut(s) 395, 432, 675, 1328
MvnI CGCG 3 cut(s) 585, 696, 698
MwoI GCNNNNNNNGC 5 cut(s) 398, 622, 803, 845, 1066
NdeII GATC 5 cut(s) 361, 538, 958, 976, 1222
NheI GCTAGC 1 cut(s) 844
NlaIII CATG 8 cut(s) 332, 368, 616, 644, 689, 1010, 1025, 1304
NlaIV GGNNCC 4 cut(s) 97, 486, 1143, 1332
NmeAIII GCCGAG 2 cut(s) 1069, 1162
NmuCI GTSAC 3 cut(s) 8, 874, 1070
NspI RCATGY 3 cut(s) 616, 644, 689
PagI TCATGA 1 cut(s) 364
PauI GCGCGC 1 cut(s) 696
PciSI GCTCTTC 1 cut(s) 221
PctI GAATGC 1 cut(s) 268
PfeI GAWTC 2 cut(s) 470, 1323
PkrI GCNGC 7 cut(s) 193, 403, 515, 518, 1205, 1208, 1229
PleI GAGTC 2 cut(s) 674, 1036
PpsI GAGTC 2 cut(s) 674, 1036
PshBI ATTAAT 1 cut(s) 1311
Psp6I CCWGG 4 cut(s) 393, 430, 673, 1326
PspEI GGTNACC 1 cut(s) 874
PspFI CCCAGC 1 cut(s) 1036
PspGI CCWGG 4 cut(s) 393, 430, 673, 1326
PspN4I GGNNCC 4 cut(s) 97, 486, 1143, 1332
PspPI GGNCC 4 cut(s) 391, 521, 691, 764
PstI CTGCAG 1 cut(s) 193
PstNI CAGNNNCTG 1 cut(s) 516
PsuI RGATCY 1 cut(s) 538
PteI GCGCGC 1 cut(s) 696
PvuII CAGCTG 1 cut(s) 516
RsaI GTAC 5 cut(s) 97, 222, 448, 492, 953
RsaNI GTAC 5 cut(s) 96, 221, 447, 491, 952
RseI CAYNNNNRTG 1 cut(s) 333
SapI GCTCTTC 1 cut(s) 221
SaqAI TTAA 5 cut(s) 24, 630, 1080, 1155, 1311
SatI GCNGC 7 cut(s) 192, 402, 514, 517, 1204, 1207, 1228
Sau3AI GATC 5 cut(s) 361, 538, 958, 976, 1222
Sau96I GGNCC 4 cut(s) 391, 521, 691, 764
SchI GAGTC 2 cut(s) 675, 1037
ScrFI CCNGG 4 cut(s) 395, 432, 675, 1328
SduI GDGCHC 2 cut(s) 62, 328
SfcI CTRYAG 2 cut(s) 189, 1335
SinI GGWCC 1 cut(s) 764
SmiMI CAYNNNNRTG 1 cut(s) 333
SmlI CTYRAG 2 cut(s) 617, 646
SmoI CTYRAG 2 cut(s) 617, 646
Sse9I AATT 7 cut(s) 50, 263, 426, 452, 1095, 1129, 1308
SsiI CCGC 4 cut(s) 519, 694, 745, 1206
SspMI CTAG 3 cut(s) 845, 962, 1160
StyD4I CCNGG 4 cut(s) 393, 430, 673, 1326
StyI CCWWGG 2 cut(s) 232, 854
TaaI ACNGT 2 cut(s) 41, 956
TaqI TCGA 4 cut(s) 207, 756, 776, 1275
TasI AATT 7 cut(s) 50, 263, 426, 452, 1095, 1129, 1308
TatI WGTACW 3 cut(s) 446, 490, 951
TauI GCSGC 1 cut(s) 1209
TfiI GAWTC 2 cut(s) 470, 1323
Tru1I TTAA 5 cut(s) 24, 630, 1080, 1155, 1311
Tru9I TTAA 5 cut(s) 24, 630, 1080, 1155, 1311
TscAI CASTG 5 cut(s) 183, 193, 292, 961, 1062
TseFI GTSAC 3 cut(s) 8, 874, 1070
TseI GCWGC 6 cut(s) 191, 401, 513, 516, 1203, 1227
Tsp45I GTSAC 3 cut(s) 8, 874, 1070
TspDTI ATGAA 1 cut(s) 1266
TspRI CASTG 5 cut(s) 183, 193, 292, 961, 1062
VpaK11BI GGWCC 1 cut(s) 764
VspI ATTAAT 1 cut(s) 1311
XapI RAATTY 1 cut(s) 452
XceI RCATGY 3 cut(s) 616, 644, 689
XspI CTAG 3 cut(s) 845, 962, 1160
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.