pycom15g12500
MYB Family

Target of Myb protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0008292
Physical Location & Seq
Reverse (-)
8530844 .. 8531501
658 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g12500.1

Sequence Viewer

Length: 474 bp
ATGAGCAGCTCCAGAAGGTTCTTGCAAGACATGAATTCCTACTTTCTTGTAAGCCTACACCAACTGTTAACCATCTTAACCAAGAGGAGGCTGAGGAGGAAGAGGAGGCTGAGCAGCTTGTCCGAAGGAAAAGCTTGTGTAAGGCCTGAGGATGAAGAGCAATCAGCCGAGCGCCCCCACTTGGGCTTGCTTGGATCAACCCAGCCAGCAGAACGGCTGAACCGTCCACTAATACGACCACTTTCGTTAGAGCCATTGCATGAATCAAATGGGCATCTTCCGCCTGCAAATGGGCATCTTCCACCTGCAAATGGGCATCTTCCACCCCCACCTGCAAAACACATTGAGAGGGAAAAATATTTCCAGGGGACCAAGACCGATGGTTCTGGTTTGGCTGGCCATGTGAGGGGTCTCTCATTACATAGACGCAATGCCAGTAGCTCTCGCAGTGGAAGCATGGATTTCAGCGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GAT VHS

Protein Analysis

158

Amino Acids

17.55

Weight (kDa)

10.59

Isoelectric Point (pI)

89.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 313, 340
Acc36I ACCTGC 2 cut(s) 313, 340
AciI CCGC 1 cut(s) 281
AclWI GGATC 1 cut(s) 202
AcoI YGGCCR 1 cut(s) 397
AcsI RAATTY 1 cut(s) 34
AfiI CCNNNNNNNGG 6 cut(s) 87, 181, 182, 290, 311, 406
AjnI CCWGG 1 cut(s) 363
AluBI AGCT 4 cut(s) 9, 117, 134, 441
AluI AGCT 4 cut(s) 9, 117, 134, 441
Alw26I GTCTC 1 cut(s) 416
AlwI GGATC 1 cut(s) 202
AoxI GGCC 2 cut(s) 143, 397
ApeKI GCWGC 2 cut(s) 6, 114
ApoI RAATTY 1 cut(s) 34
AspLEI GCGC 1 cut(s) 174
AspS9I GGNCC 1 cut(s) 369
AvaII GGWCC 1 cut(s) 369
AxyI CCTNAGG 1 cut(s) 147
BalI TGGCCA 1 cut(s) 399
BbvCI CCTCAGC 1 cut(s) 92
BbvI GCAGC 2 cut(s) 18, 126
BccI CCATC 2 cut(s) 80, 374
BceAI ACGGC 1 cut(s) 230
BciT130I CCWGG 1 cut(s) 365
BcoDI GTCTC 1 cut(s) 416
BfoI RGCGCY 1 cut(s) 175
BfuAI ACCTGC 2 cut(s) 313, 340
BisI GCNGC 2 cut(s) 7, 115
BlpI GCTNAGC 1 cut(s) 110
BlsI GCNGC 2 cut(s) 8, 116
Bme1390I CCNGG 1 cut(s) 365
Bme18I GGWCC 1 cut(s) 369
BmgT120I GGNCC 1 cut(s) 369
BmiI GGNNCC 1 cut(s) 370
BmrFI CCNGG 1 cut(s) 365
BmsI GCATC 3 cut(s) 283, 304, 325
Bpu10I CCTNAGC 1 cut(s) 92
Bpu1102I GCTNAGC 1 cut(s) 110
BsaI GGTCTC 1 cut(s) 416
BsaJI CCNNGG 1 cut(s) 364
Bsc4I CCNNNNNNNGG 6 cut(s) 87, 181, 182, 290, 311, 406
Bse1I ACTGG 1 cut(s) 435
Bse21I CCTNAGG 1 cut(s) 147
Bse3DI GCAATG 2 cut(s) 254, 436
BseBI CCWGG 1 cut(s) 365
BseDI CCNNGG 1 cut(s) 364
BseGI GGATG 1 cut(s) 157
BseLI CCNNNNNNNGG 6 cut(s) 87, 181, 182, 290, 311, 406
BseMI GCAATG 2 cut(s) 254, 436
BseMII CTCAG 3 cut(s) 83, 101, 138
BseNI ACTGG 1 cut(s) 435
BseRI GAGGAG 3 cut(s) 100, 109, 118
BseXI GCAGC 2 cut(s) 18, 126
BseYI CCCAGC 1 cut(s) 201
BshFI GGCC 2 cut(s) 145, 399
BslFI GGGAC 1 cut(s) 382
BslI CCNNNNNNNGG 6 cut(s) 87, 181, 182, 290, 311, 406
BsmAI GTCTC 1 cut(s) 416
BsmFI GGGAC 1 cut(s) 382
BsnI GGCC 2 cut(s) 145, 399
Bso31I GGTCTC 1 cut(s) 416
Bsp143I GATC 1 cut(s) 194
Bsp1720I GCTNAGC 1 cut(s) 110
BspACI CCGC 1 cut(s) 281
BspANI GGCC 2 cut(s) 145, 399
BspCNI CTCAG 3 cut(s) 84, 102, 139
BspLI GGNNCC 1 cut(s) 370
BspMI ACCTGC 2 cut(s) 313, 340
BspPI GGATC 1 cut(s) 202
BspQI GCTCTTC 1 cut(s) 150
BspTNI GGTCTC 1 cut(s) 416
BsrDI GCAATG 2 cut(s) 254, 436
BsrI ACTGG 1 cut(s) 435
BssECI CCNNGG 1 cut(s) 364
BssMI GATC 1 cut(s) 194
Bst2UI CCWGG 1 cut(s) 365
Bst4CI ACNGT 2 cut(s) 66, 224
Bst6I CTCTTC 2 cut(s) 95, 150
BstC8I GCNNGC 4 cut(s) 188, 207, 285, 397
BstDEI CTNAG 3 cut(s) 92, 110, 147
BstF5I GGATG 1 cut(s) 157
BstH2I RGCGCY 1 cut(s) 175
BstHHI GCGC 1 cut(s) 174
BstKTI GATC 1 cut(s) 197
BstMAI GTCTC 1 cut(s) 416
BstMBI GATC 1 cut(s) 194
BstMWI GCNNNNNNNGC 2 cut(s) 280, 453
BstNI CCWGG 1 cut(s) 365
BstSCI CCNGG 1 cut(s) 363
BstV1I GCAGC 2 cut(s) 18, 126
Bsu36I CCTNAGG 1 cut(s) 147
BsuRI GGCC 2 cut(s) 145, 399
BtsCI GGATG 1 cut(s) 157
BtsI GCAGTG 1 cut(s) 454
BtsIMutI CAGTG 1 cut(s) 454
BveI ACCTGC 2 cut(s) 313, 340
Cac8I GCNNGC 4 cut(s) 188, 207, 285, 397
CfoI GCGC 1 cut(s) 174
Cfr13I GGNCC 1 cut(s) 369
CseI GACGC 1 cut(s) 435
CviAII CATG 4 cut(s) 31, 260, 401, 457
DdeI CTNAG 3 cut(s) 92, 110, 147
DpnI GATC 1 cut(s) 196
DpnII GATC 1 cut(s) 194
EaeI YGGCCR 1 cut(s) 397
Eam1104I CTCTTC 2 cut(s) 95, 150
EarI CTCTTC 2 cut(s) 95, 150
EciI GGCGGA 1 cut(s) 270
Eco147I AGGCCT 1 cut(s) 145
Eco31I GGTCTC 1 cut(s) 416
Eco47I GGWCC 1 cut(s) 369
Eco81I CCTNAGG 1 cut(s) 147
EcoRI GAATTC 1 cut(s) 34
EcoRII CCWGG 1 cut(s) 363
FaeI CATG 4 cut(s) 34, 263, 404, 460
FaiI YATR 5 cut(s) 32, 261, 402, 423, 458
FaqI GGGAC 1 cut(s) 382
FatI CATG 4 cut(s) 30, 259, 400, 456
Fnu4HI GCNGC 2 cut(s) 7, 115
FokI GGATG 1 cut(s) 164
Fsp4HI GCNGC 2 cut(s) 7, 115
GlaI GCGC 1 cut(s) 173
GluI GCNGC 2 cut(s) 7, 115
GsaI CCCAGC 1 cut(s) 205
HaeII RGCGCY 1 cut(s) 175
HaeIII GGCC 2 cut(s) 145, 399
HgaI GACGC 1 cut(s) 435
HhaI GCGC 1 cut(s) 174
Hin1II CATG 4 cut(s) 34, 263, 404, 460
Hin6I GCGC 1 cut(s) 172
HinP1I GCGC 1 cut(s) 172
HincII GTYRAC 1 cut(s) 69
HindII GTYRAC 1 cut(s) 69
HindIII AAGCTT 1 cut(s) 132
HinfI GANTC 1 cut(s) 263
HpaI GTTAAC 1 cut(s) 69
Hpy166II GTNNAC 2 cut(s) 69, 227
Hpy188I TCNGA 1 cut(s) 124
Hpy188III TCNNGA 1 cut(s) 12
Hpy8I GTNNAC 2 cut(s) 69, 227
HpyAV CCTTC 2 cut(s) 9, 119
HpyCH4III ACNGT 2 cut(s) 66, 224
HpyCH4V TGCA 5 cut(s) 25, 259, 287, 308, 335
HpyF10VI GCNNNNNNNGC 2 cut(s) 280, 453
HpyF3I CTNAG 3 cut(s) 92, 110, 147
Hsp92II CATG 4 cut(s) 34, 263, 404, 460
HspAI GCGC 1 cut(s) 172
KspAI GTTAAC 1 cut(s) 69
Kzo9I GATC 1 cut(s) 194
LguI GCTCTTC 1 cut(s) 150
LmnI GCTCC 1 cut(s) 14
Lsp1109I GCAGC 2 cut(s) 18, 126
LweI GCATC 3 cut(s) 283, 304, 325
MalI GATC 1 cut(s) 196
MboI GATC 1 cut(s) 194
MboII GAAGA 5 cut(s) 112, 167, 269, 290, 311
MlsI TGGCCA 1 cut(s) 399
MluCI AATT 1 cut(s) 34
MluNI TGGCCA 1 cut(s) 399
MnlI CCTC 9 cut(s) 78, 81, 87, 90, 96, 99, 142, 342, 399
Mox20I TGGCCA 1 cut(s) 399
MscI TGGCCA 1 cut(s) 399
MseI TTAA 2 cut(s) 68, 77
Msp20I TGGCCA 1 cut(s) 399
MspR9I CCNGG 1 cut(s) 365
MvaI CCWGG 1 cut(s) 365
MwoI GCNNNNNNNGC 2 cut(s) 280, 453
NdeII GATC 1 cut(s) 194
NlaIII CATG 4 cut(s) 34, 263, 404, 460
NlaIV GGNNCC 1 cut(s) 370
NmeAIII GCCGAG 1 cut(s) 193
PaqCI CACCTGC 2 cut(s) 313, 340
PceI AGGCCT 1 cut(s) 145
PciSI GCTCTTC 1 cut(s) 150
PcsI WCGNNNNNNNCGW 1 cut(s) 220
PfeI GAWTC 1 cut(s) 263
PkrI GCNGC 2 cut(s) 8, 116
Psp6I CCWGG 1 cut(s) 363
PspFI CCCAGC 1 cut(s) 201
PspGI CCWGG 1 cut(s) 363
PspN4I GGNNCC 1 cut(s) 370
PspPI GGNCC 1 cut(s) 369
SapI GCTCTTC 1 cut(s) 150
SaqAI TTAA 2 cut(s) 68, 77
SatI GCNGC 2 cut(s) 7, 115
Sau3AI GATC 1 cut(s) 194
Sau96I GGNCC 1 cut(s) 369
ScrFI CCNGG 1 cut(s) 365
SetI ASST 7 cut(s) 11, 20, 119, 136, 307, 334, 443
SfaNI GCATC 3 cut(s) 283, 304, 325
SinI GGWCC 1 cut(s) 369
Sse9I AATT 1 cut(s) 34
SseBI AGGCCT 1 cut(s) 145
SsiI CCGC 1 cut(s) 281
SspI AATATT 1 cut(s) 359
StuI AGGCCT 1 cut(s) 145
StyD4I CCNGG 1 cut(s) 363
TaaI ACNGT 2 cut(s) 66, 224
TaqII GACCGA 1 cut(s) 392
TasI AATT 1 cut(s) 34
TfiI GAWTC 1 cut(s) 263
Tru1I TTAA 2 cut(s) 68, 77
Tru9I TTAA 2 cut(s) 68, 77
TscAI CASTG 1 cut(s) 454
TseI GCWGC 2 cut(s) 6, 114
TspDTI ATGAA 3 cut(s) 47, 168, 276
TspRI CASTG 1 cut(s) 454
VpaK11BI GGWCC 1 cut(s) 369
XapI RAATTY 1 cut(s) 34
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.