Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000091.1

Orthogroup ID

OG0008292

Physical Location & Seq

Genomic Coordinates Reverse (-)

76892 .. 80670

Gene Structure 3779 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000091.1_g000015.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1242 bp

atgaccactgagcagactctggctttcaagtctgtgagtgaatgggtttatttggatcaagcttcttcaccggcttccactgcagcttctggtgttgtggatgattttggggttcagaagactcttggaagaggtggagagaaggtggtgtttgaattgcattcacattcaaaatgcagtgatggctttctttcgccttccaagttggtggaaagggctcatggaaatggggtgaaagttcttgctctgacagatcatgacacaatgtctggcatccctgaggccctagaagcagctcgtagatttggcatgaagataattcctggtgttgaaatcagtacaattttccaaccaagaggagagtctgaactggaggaaccagtgcacatccttgcatattacagcagctgcgggccaacaagttttgaagagcttgaaaagttcttgtctaatataagggatggtcgttatcttcgtgcaaagaatatggtctccaaattgaacaagcttaagtttcctcttacatgggagcatgttgcaagggttgcaggcaagggagtcgctcctgggagattgcatgtggcccgagccatggttgaagccggttatgtggaaaatctgaaacaagcttttgcccgctatcttttcgatggtggacctgcatatgctacgggaagtgaaccaccaacagaggatgcaataaaaatgatatgtgatacgggaggtgtggctgtgctagctcatccatgggcattgaaaaatacagttgccatcatcagaagtttgaaagaagctggccttcatgggatggaagtttacagaagtgatggaaaactgactgcatacagtgatctagctgatacttatggtcttctgaagctaggagggtcagattaccatggccgaggtggacagggtgagtctgagctgggtagtgtgaaccttccagttttggttttgcgtgactttcttaaagtcgctcgaccaatttggtgtggtgccattagtcacatagtagagaactatgctgacgaaccttcagattcaaatctagcaaggattacaaggtttgggaagggaggttcccctttaagctgcggcaaggacatgattgatcgttgcttgtttttgtggttgacaaatgaagagaggcaaaatgcagtttttgaggccattaaactgaagctttctcgtatttcaattaatcacggaggaaaccaggttgccatagagagtaaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PHP

Protein Analysis

413

Amino Acids

44.91

Weight (kDa)

6.65

Isoelectric Point (pI)

33.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008292)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G13840
fragaria_vesca	FvH4_1g25470 FvH4_1g25470 FvH4_1g25470 FvH4_1g25470 FvH4_1g25470 FvH4_1g25470 FvH4_1g25470
malus_domestica	MD10G1052200.v1.1
prunus_persica	Prupe.8G062500_v2.0.a1 Prupe.8G062500_v2.0.a1
pyrus_communis	pycom10g03690 pycom15g12500
rosa_chinensis	RchiOBHm_Chr2g0123601
rosa_laevigata	RLG00000018759
rosa_multiflora	Rmu_ssc0000091.1_g000015
rosa_roxburghii	Rroxscaffold_2G00120560
rosa_rugosa	Rorug02G0246400
rosa_samantha	Rh2AG305600 Rh2BG313500 Rh2CG291700 Rh2DG329400
rosa_wichuraiana	Rw2G024480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	667
AccB1I	GGYRCC	1 cut(s)	998
AciI	CCGC	3 cut(s)	411, 637, 1098
AclWI	GGATC	1 cut(s)	63
AcoI	YGGCCR	1 cut(s)	901
AcuI	CTGAAG	3 cut(s)	896, 1023, 1202
AfaI	GTAC	1 cut(s)	340
AfiI	CCNNNNNNNGG	1 cut(s)	592
AflII	CTTAAG	1 cut(s)	509
AhdI	GACNNNNNGTC	1 cut(s)	265
AjnI	CCWGG	3 cut(s)	322, 565, 1218
AloI	GAACNNNNNNTCC	2 cut(s)	1066, 1098
Alw21I	GWGCWC	1 cut(s)	387
Alw26I	GTCTC	1 cut(s)	496
Alw44I	GTGCAC	1 cut(s)	383
AlwI	GGATC	1 cut(s)	63
AlwNI	CAGNNNCTG	3 cut(s)	19, 89, 408
Ama87I	CYCGRG	1 cut(s)	585
AoxI	GGCC	6 cut(s)	282, 413, 582, 796, 901, 1170
ApaLI	GTGCAC	1 cut(s)	383
ApeKI	GCWGC	5 cut(s)	83, 293, 405, 408, 1095
AseI	ATTAAT	1 cut(s)	1203
AspS9I	GGNCC	4 cut(s)	283, 413, 583, 656
AsuHPI	GGTGA	3 cut(s)	60, 244, 929
AsuNHI	GCTAGC	1 cut(s)	736
AvaI	CYCGRG	1 cut(s)	585
AvaII	GGWCC	1 cut(s)	656
AxyI	CCTNAGG	1 cut(s)	279
BaeGI	GKGCMC	1 cut(s)	387
BanI	GGYRCC	1 cut(s)	998
BanII	GRGCYC	1 cut(s)	220
BbsI	GAAGAC	2 cut(s)	125, 863
Bbv12I	GWGCWC	1 cut(s)	387
BbvI	GCAGC	5 cut(s)	95, 305, 395, 417, 1082
BccI	CCATC	6 cut(s)	176, 455, 644, 779, 802, 821
BcgI	CGANNNNNNTGC	2 cut(s)	541, 575
BciT130I	CCWGG	3 cut(s)	324, 567, 1220
BcoDI	GTCTC	1 cut(s)	496
BfaI	CTAG	5 cut(s)	287, 737, 854, 881, 1052
BfmI	CTRYAG	1 cut(s)	81
BfrI	CTTAAG	1 cut(s)	509
BfuAI	ACCTGC	1 cut(s)	667
BisI	GCNGC	6 cut(s)	84, 294, 406, 409, 1096, 1099
BlsI	GCNGC	6 cut(s)	85, 295, 407, 410, 1097, 1100
Bme1390I	CCNGG	3 cut(s)	324, 567, 1220
Bme18I	GGWCC	1 cut(s)	656
BmeRI	GACNNNNNGTC	1 cut(s)	265
BmeT110I	CYCGRG	1 cut(s)	585
BmgT120I	GGNCC	4 cut(s)	283, 413, 583, 656
BmiI	GGNNCC	3 cut(s)	378, 1000, 1084
BmrFI	CCNGG	3 cut(s)	324, 567, 1220
BmsI	GCATC	2 cut(s)	282, 685
BmtI	GCTAGC	1 cut(s)	740
BpiI	GAAGAC	2 cut(s)	125, 863
BpmI	CTGGAG	1 cut(s)	392
BsaBI	GATNNNNATC	1 cut(s)	1047
BsaI	GGTCTC	1 cut(s)	496
BsaJI	CCNNGG	5 cut(s)	566, 591, 746, 898, 904
BsaXI	ACNNNNNCTCC	2 cut(s)	129, 159
Bsc4I	CCNNNNNNNGG	1 cut(s)	592
Bse118I	RCCGGY	2 cut(s)	70, 602
Bse1I	ACTGG	3 cut(s)	375, 380, 947
Bse21I	CCTNAGG	1 cut(s)	279
Bse8I	GATNNNNATC	1 cut(s)	1047
BseBI	CCWGG	3 cut(s)	324, 567, 1220
BseDI	CCNNGG	5 cut(s)	566, 591, 746, 898, 904
BseGI	GGATG	7 cut(s)	106, 273, 387, 466, 700, 742, 813
BseJI	GATNNNNATC	1 cut(s)	1047
BseLI	CCNNNNNNNGG	1 cut(s)	592
BseMII	CTCAG	2 cut(s)	270, 915
BseNI	ACTGG	3 cut(s)	375, 380, 947
BseRI	GAGGAG	1 cut(s)	372
BseSI	GKGCMC	1 cut(s)	387
BseXI	GCAGC	5 cut(s)	95, 305, 395, 417, 1082
BseYI	CCCAGC	1 cut(s)	928
BshFI	GGCC	6 cut(s)	284, 415, 584, 798, 903, 1172
BshNI	GGYRCC	1 cut(s)	998
BsiHKAI	GWGCWC	1 cut(s)	387
BsiHKCI	CYCGRG	1 cut(s)	585
BsiSI	CCGG	2 cut(s)	71, 603
BslI	CCNNNNNNNGG	1 cut(s)	592
BsmAI	GTCTC	1 cut(s)	496
BsmI	GAATGC	1 cut(s)	160
BsnI	GGCC	6 cut(s)	284, 415, 584, 798, 903, 1172
Bso31I	GGTCTC	1 cut(s)	496
BsoBI	CYCGRG	1 cut(s)	585
Bsp1286I	GDGCHC	2 cut(s)	220, 387
Bsp143I	GATC	4 cut(s)	55, 253, 850, 1114
Bsp19I	CCATGG	3 cut(s)	591, 746, 898
BspACI	CCGC	3 cut(s)	411, 637, 1098
BspANI	GGCC	6 cut(s)	284, 415, 584, 798, 903, 1172
BspCNI	CTCAG	2 cut(s)	271, 916
BspHI	TCATGA	1 cut(s)	256
BspLI	GGNNCC	3 cut(s)	378, 1000, 1084
BspMAI	CTGCAG	1 cut(s)	85
BspMI	ACCTGC	1 cut(s)	667
BspOI	GCTAGC	1 cut(s)	740
BspPI	GGATC	1 cut(s)	63
BspQI	GCTCTTC	1 cut(s)	423
BspT107I	GGYRCC	1 cut(s)	998
BspTI	CTTAAG	1 cut(s)	509
BspTNI	GGTCTC	1 cut(s)	496
BsrFI	RCCGGY	2 cut(s)	70, 602
BsrI	ACTGG	3 cut(s)	375, 380, 947
BssAI	RCCGGY	2 cut(s)	70, 602
BssECI	CCNNGG	5 cut(s)	566, 591, 746, 898, 904
BssMI	GATC	4 cut(s)	55, 253, 850, 1114
BssT1I	CCWWGG	3 cut(s)	591, 746, 898
Bst2UI	CCWGG	3 cut(s)	324, 567, 1220
Bst4CI	ACNGT	2 cut(s)	766, 848
Bst6I	CTCTTC	3 cut(s)	124, 423, 1140
BstAFI	CTTAAG	1 cut(s)	509
BstAPI	GCANNNNNTGC	1 cut(s)	545
BstC8I	GCNNGC	5 cut(s)	413, 550, 637, 738, 796
BstDEI	CTNAG	3 cut(s)	9, 279, 924
BstDSI	CCRYGG	3 cut(s)	591, 746, 898
BstF5I	GGATG	7 cut(s)	106, 273, 387, 466, 700, 742, 813
BstKTI	GATC	4 cut(s)	58, 256, 853, 1117
BstMAI	GTCTC	1 cut(s)	496
BstMBI	GATC	4 cut(s)	55, 253, 850, 1114
BstMWI	GCNNNNNNNGC	5 cut(s)	80, 183, 290, 545, 737
BstNI	CCWGG	3 cut(s)	324, 567, 1220
BstNSI	RCATGY	2 cut(s)	536, 581
BstSCI	CCNGG	3 cut(s)	322, 565, 1218
BstSFI	CTRYAG	1 cut(s)	81
BstSLI	GKGCMC	1 cut(s)	387
BstV1I	GCAGC	5 cut(s)	95, 305, 395, 417, 1082
BstV2I	GAAGAC	2 cut(s)	125, 863
BstXI	CCANNNNNNTGG	1 cut(s)	208
Bsu36I	CCTNAGG	1 cut(s)	279
BsuRI	GGCC	6 cut(s)	284, 415, 584, 798, 903, 1172
BtgI	CCRYGG	3 cut(s)	591, 746, 898
BtsCI	GGATG	7 cut(s)	106, 273, 387, 466, 700, 742, 813
BtsI	GCAGTG	2 cut(s)	78, 184
BtsIMutI	CAGTG	5 cut(s)	6, 78, 184, 387, 853
BveI	ACCTGC	1 cut(s)	667
Cac8I	GCNNGC	5 cut(s)	413, 550, 637, 738, 796
CaiI	CAGNNNCTG	3 cut(s)	19, 89, 408
CciI	TCATGA	1 cut(s)	256
Cfr10I	RCCGGY	2 cut(s)	70, 602
Cfr13I	GGNCC	4 cut(s)	283, 413, 583, 656
CsiI	ACCWGGT	1 cut(s)	1218
Csp6I	GTAC	1 cut(s)	339
CviQI	GTAC	1 cut(s)	339
DdeI	CTNAG	3 cut(s)	9, 279, 924
DpnI	GATC	4 cut(s)	57, 255, 852, 1116
DpnII	GATC	4 cut(s)	55, 253, 850, 1114
DriI	GACNNNNNGTC	1 cut(s)	265
EaeI	YGGCCR	1 cut(s)	901
Eam1104I	CTCTTC	3 cut(s)	124, 423, 1140
Eam1105I	GACNNNNNGTC	1 cut(s)	265
EarI	CTCTTC	3 cut(s)	124, 423, 1140
Eco130I	CCWWGG	3 cut(s)	591, 746, 898
Eco24I	GRGCYC	1 cut(s)	220
Eco31I	GGTCTC	1 cut(s)	496
Eco47I	GGWCC	1 cut(s)	656
Eco57I	CTGAAG	3 cut(s)	896, 1023, 1202
Eco81I	CCTNAGG	1 cut(s)	279
Eco88I	CYCGRG	1 cut(s)	585
EcoO109I	RGGNCCY	1 cut(s)	283
EcoRII	CCWGG	3 cut(s)	322, 565, 1218
EcoT14I	CCWWGG	3 cut(s)	591, 746, 898
EcoT38I	GRGCYC	1 cut(s)	220
ErhI	CCWWGG	3 cut(s)	591, 746, 898
FalI	AAGNNNNNCTT	2 cut(s)	783, 815
FauI	CCCGC	2 cut(s)	404, 644
FauNDI	CATATG	1 cut(s)	664
Fnu4HI	GCNGC	6 cut(s)	84, 294, 406, 409, 1096, 1099
FokI	GGATG	7 cut(s)	113, 260, 374, 473, 707, 729, 820
FriOI	GRGCYC	1 cut(s)	220
Fsp4HI	GCNGC	6 cut(s)	84, 294, 406, 409, 1096, 1099
FspBI	CTAG	5 cut(s)	287, 737, 854, 881, 1052
GluI	GCNGC	6 cut(s)	84, 294, 406, 409, 1096, 1099
GsaI	CCCAGC	1 cut(s)	932
GsuI	CTGGAG	1 cut(s)	392
HaeIII	GGCC	6 cut(s)	284, 415, 584, 798, 903, 1172
HapII	CCGG	2 cut(s)	71, 603
HincII	GTYRAC	1 cut(s)	1137
HindII	GTYRAC	1 cut(s)	1137
HindIII	AAGCTT	4 cut(s)	60, 506, 627, 1184
HinfI	GANTC	6 cut(s)	16, 121, 362, 558, 920, 1043
HpaII	CCGG	2 cut(s)	71, 603
HphI	GGTGA	3 cut(s)	60, 244, 929
Hpy166II	GTNNAC	7 cut(s)	385, 656, 680, 817, 911, 940, 1137
Hpy188I	TCNGA	9 cut(s)	117, 249, 367, 621, 779, 876, 892, 925, 1042
Hpy188III	TCNNGA	1 cut(s)	257
Hpy8I	GTNNAC	7 cut(s)	385, 656, 680, 817, 911, 940, 1137
HpyAV	CCTTC	6 cut(s)	136, 207, 809, 953, 1047, 1069
HpyCH4III	ACNGT	2 cut(s)	766, 848
HpyF10VI	GCNNNNNNNGC	5 cut(s)	80, 183, 290, 545, 737
HpyF3I	CTNAG	3 cut(s)	9, 279, 924
Kzo9I	GATC	4 cut(s)	55, 253, 850, 1114
LguI	GCTCTTC	1 cut(s)	423
LmnI	GCTCC	2 cut(s)	529, 568
Lsp1109I	GCAGC	5 cut(s)	95, 305, 395, 417, 1082
LweI	GCATC	2 cut(s)	282, 685
MabI	ACCWGGT	1 cut(s)	1218
MaeI	CTAG	5 cut(s)	287, 737, 854, 881, 1052
MaeIII	GTNAC	2 cut(s)	962, 1007
MalI	GATC	4 cut(s)	57, 255, 852, 1116
MboI	GATC	4 cut(s)	55, 253, 850, 1114
MboII	GAAGA	8 cut(s)	57, 130, 141, 325, 440, 464, 863, 1157
MhlI	GDGCHC	2 cut(s)	220, 387
MluCI	AATT	6 cut(s)	155, 318, 342, 497, 987, 1200
MlyI	GAGTC	5 cut(s)	10, 115, 371, 567, 929
MmeI	TCCRAC	1 cut(s)	373
MseI	TTAA	5 cut(s)	510, 972, 1091, 1176, 1203
MslI	CAYNNNNRTG	1 cut(s)	225
MspA1I	CMGCKG	1 cut(s)	408
MspCI	CTTAAG	1 cut(s)	509
MspI	CCGG	2 cut(s)	71, 603
MspR9I	CCNGG	3 cut(s)	324, 567, 1220
Mva1269I	GAATGC	1 cut(s)	160
MvaI	CCWGG	3 cut(s)	324, 567, 1220
MwoI	GCNNNNNNNGC	5 cut(s)	80, 183, 290, 545, 737
NcoI	CCATGG	3 cut(s)	591, 746, 898
NdeI	CATATG	1 cut(s)	664
NdeII	GATC	4 cut(s)	55, 253, 850, 1114
NheI	GCTAGC	1 cut(s)	736
NlaIV	GGNNCC	3 cut(s)	378, 1000, 1084
NmeAIII	GCCGAG	1 cut(s)	929
NmuCI	GTSAC	2 cut(s)	962, 1007
NspI	RCATGY	2 cut(s)	536, 581
PagI	TCATGA	1 cut(s)	256
PciSI	GCTCTTC	1 cut(s)	423
PcsI	WCGNNNNNNNCGW	1 cut(s)	472
PctI	GAATGC	1 cut(s)	160
PfeI	GAWTC	1 cut(s)	1043
PkrI	GCNGC	6 cut(s)	85, 295, 407, 410, 1097, 1100
PleI	GAGTC	5 cut(s)	10, 115, 370, 566, 928
PpsI	GAGTC	5 cut(s)	10, 115, 370, 566, 928
PshBI	ATTAAT	1 cut(s)	1203
Psp6I	CCWGG	3 cut(s)	322, 565, 1218
PspFI	CCCAGC	1 cut(s)	928
PspGI	CCWGG	3 cut(s)	322, 565, 1218
PspN4I	GGNNCC	3 cut(s)	378, 1000, 1084
PspPI	GGNCC	4 cut(s)	283, 413, 583, 656
PstI	CTGCAG	1 cut(s)	85
PstNI	CAGNNNCTG	3 cut(s)	19, 89, 408
PvuII	CAGCTG	1 cut(s)	408
RsaI	GTAC	1 cut(s)	340
RsaNI	GTAC	1 cut(s)	339
RseI	CAYNNNNRTG	1 cut(s)	225
SapI	GCTCTTC	1 cut(s)	423
SaqAI	TTAA	5 cut(s)	510, 972, 1091, 1176, 1203
SatI	GCNGC	6 cut(s)	84, 294, 406, 409, 1096, 1099
Sau3AI	GATC	4 cut(s)	55, 253, 850, 1114
Sau96I	GGNCC	4 cut(s)	283, 413, 583, 656
SchI	GAGTC	5 cut(s)	10, 115, 371, 567, 929
ScrFI	CCNGG	3 cut(s)	324, 567, 1220
SduI	GDGCHC	2 cut(s)	220, 387
SexAI	ACCWGGT	1 cut(s)	1218
SfaNI	GCATC	2 cut(s)	282, 685
SfcI	CTRYAG	1 cut(s)	81
SinI	GGWCC	1 cut(s)	656
SmiMI	CAYNNNNRTG	1 cut(s)	225
SmlI	CTYRAG	1 cut(s)	509
SmoI	CTYRAG	1 cut(s)	509
Sse9I	AATT	6 cut(s)	155, 318, 342, 497, 987, 1200
SsiI	CCGC	3 cut(s)	411, 637, 1098
SspMI	CTAG	5 cut(s)	287, 737, 854, 881, 1052
StyD4I	CCNGG	3 cut(s)	322, 565, 1218
StyI	CCWWGG	3 cut(s)	591, 746, 898
TaaI	ACNGT	2 cut(s)	766, 848
TaqI	TCGA	2 cut(s)	648, 982
TasI	AATT	6 cut(s)	155, 318, 342, 497, 987, 1200
TatI	WGTACW	1 cut(s)	338
TauI	GCSGC	1 cut(s)	1101
TfiI	GAWTC	1 cut(s)	1043
Tru1I	TTAA	5 cut(s)	510, 972, 1091, 1176, 1203
Tru9I	TTAA	5 cut(s)	510, 972, 1091, 1176, 1203
TscAI	CASTG	5 cut(s)	13, 85, 184, 387, 853
TseFI	GTSAC	2 cut(s)	962, 1007
TseI	GCWGC	5 cut(s)	83, 293, 405, 408, 1095
Tsp45I	GTSAC	2 cut(s)	962, 1007
TspDTI	ATGAA	3 cut(s)	326, 791, 1158
TspGWI	ACGGA	1 cut(s)	1224
TspRI	CASTG	5 cut(s)	13, 85, 184, 387, 853
Vha464I	CTTAAG	1 cut(s)	509
VneI	GTGCAC	1 cut(s)	383
VpaK11BI	GGWCC	1 cut(s)	656
VspI	ATTAAT	1 cut(s)	1203
XceI	RCATGY	2 cut(s)	536, 581
XcmI	CCANNNNNNNNNTGG	1 cut(s)	905
XspI	CTAG	5 cut(s)	287, 737, 854, 881, 1052

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.