Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0015472

Physical Location & Seq

Genomic Coordinates Reverse (-)

14961350 .. 14962069

Gene Structure 720 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G123900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ATGTCGAGTGCAAACTTCCTCGATTTCCAGTATAACCTCTCAAAACGGAAGTTTCTGCGAAAACCATCACATGTATTTTCCTTCCGAGACAGGCAAAACTCTGGCGTATCTCCTTCTTTTGAGCCAAATCCCAATGAAATGAAGAGAGTGTTTGACAAATTTGACTCCAACAAAGATGGGAAGATATCTCAGCCGGAGTACAAGGCCATCTTGAGAGCACTAGGAAAGGGAAACATGGTTGGAGAAGTCCCCAAGATTTTTAGGATTGCCGATTTGGACGGGGACGGGTTTATTAATTTTAAGGAGTTCATGGAAGTACACAAGAAGGGAGGCGGGATTCGAACGATAGACATTCAGAATGCTTTTCGGACGTTTGATTTGAACGGCGATGGAAAAATAAGTGCTGAAGAAGTCATGGAAGTGCTGGGGAGGTTGGGGGAGAGTTGCAGCCTTGAAGACTGCCAGAGAATGGTACGAGCAGTAGACACCGATGGGGATGGCGTGGTTGACATAGATGAGTTCATGACCATGATGACTCGGTCCATGAAAACATGCTTAGAGAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005509 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046872

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_6 EF-hand_8

Protein Analysis

189

Amino Acids

21.32

Weight (kDa)

5.8

Isoelectric Point (pI)

31.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015472)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G15680
fragaria_vesca	FvH4_2g06140
malus_domestica	MD05G1080100.v1.1 MD10G1094100.v1.1
prunus_persica	Prupe.8G123900_v2.0.a1
pyrus_communis	pycom05g07320
rosa_chinensis	RchiOBHm_Chr6g0257051
rosa_laevigata	RLG00000014673
rosa_multiflora	Rmu_sc0000659.1_g000010
rosa_roxburghii	Rroxscaffold_7G00208460
rosa_rugosa	Rorug05G0575600
rosa_samantha	Rh6AG093600 Rh6BG084400 Rh6CG081100 Rh6DG076500
rosa_wichuraiana	Rw6G008050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	469
AccI	GTMKAC	1 cut(s)	483
AciI	CCGC	1 cut(s)	333
AcsI	RAATTY	1 cut(s)	158
AcuI	CTGAAG	1 cut(s)	426
AfaI	GTAC	3 cut(s)	200, 318, 474
AfiI	CCNNNNNNNGG	1 cut(s)	469
AflIII	ACRYGT	1 cut(s)	70
AgsI	TTSAA	2 cut(s)	382, 455
Alw21I	GWGCWC	1 cut(s)	220
Alw26I	GTCTC	1 cut(s)	81
AoxI	GGCC	1 cut(s)	204
ApeKI	GCWGC	1 cut(s)	447
ApoI	RAATTY	1 cut(s)	158
ArsI	GACNNNNNNTTYG	2 cut(s)	361, 393
AseI	ATTAAT	1 cut(s)	294
AspS9I	GGNCC	1 cut(s)	540
AsuII	TTCGAA	1 cut(s)	340
AvaII	GGWCC	1 cut(s)	540
BbsI	GAAGAC	1 cut(s)	462
Bbv12I	GWGCWC	1 cut(s)	220
BbvI	GCAGC	1 cut(s)	459
BccI	CCATC	6 cut(s)	73, 170, 215, 383, 485, 491
BceAI	ACGGC	1 cut(s)	400
BcoDI	GTCTC	1 cut(s)	81
BfaI	CTAG	1 cut(s)	221
BisI	GCNGC	1 cut(s)	448
BlsI	GCNGC	1 cut(s)	449
Bme18I	GGWCC	1 cut(s)	540
BmgT120I	GGNCC	1 cut(s)	540
BpiI	GAAGAC	1 cut(s)	462
Bpu14I	TTCGAA	1 cut(s)	340
BpuEI	CTTGAG	1 cut(s)	232
Bsc4I	CCNNNNNNNGG	1 cut(s)	469
Bse1I	ACTGG	1 cut(s)	28
BseGI	GGATG	1 cut(s)	502
BseLI	CCNNNNNNNGG	1 cut(s)	469
BseMII	CTCAG	1 cut(s)	203
BseNI	ACTGG	1 cut(s)	28
BseXI	GCAGC	1 cut(s)	459
BseYI	CCCAGC	1 cut(s)	424
BshFI	GGCC	1 cut(s)	206
BsiHKAI	GWGCWC	1 cut(s)	220
BsiSI	CCGG	1 cut(s)	194
BslFI	GGGAC	2 cut(s)	233, 296
BslI	CCNNNNNNNGG	1 cut(s)	469
BsmAI	GTCTC	1 cut(s)	81
BsmFI	GGGAC	2 cut(s)	233, 296
BsmI	GAATGC	1 cut(s)	364
BsnI	GGCC	1 cut(s)	206
Bsp119I	TTCGAA	1 cut(s)	340
Bsp1286I	GDGCHC	1 cut(s)	220
BspACI	CCGC	1 cut(s)	333
BspANI	GGCC	1 cut(s)	206
BspCNI	CTCAG	1 cut(s)	202
BspHI	TCATGA	1 cut(s)	522
BspT104I	TTCGAA	1 cut(s)	340
BsrI	ACTGG	1 cut(s)	28
Bst6I	CTCTTC	1 cut(s)	137
BstBI	TTCGAA	1 cut(s)	340
BstDEI	CTNAG	2 cut(s)	189, 556
BstF5I	GGATG	1 cut(s)	502
BstMAI	GTCTC	1 cut(s)	81
BstNSI	RCATGY	2 cut(s)	74, 555
BstV1I	GCAGC	1 cut(s)	459
BstV2I	GAAGAC	1 cut(s)	462
BsuRI	GGCC	1 cut(s)	206
BtgZI	GCGATG	1 cut(s)	402
BtsCI	GGATG	1 cut(s)	502
CciI	TCATGA	1 cut(s)	522
Cfr13I	GGNCC	1 cut(s)	540
Csp6I	GTAC	3 cut(s)	199, 317, 473
CviAII	CATG	8 cut(s)	71, 235, 310, 415, 523, 529, 544, 552
CviJI	RGCY	4 cut(s)	124, 193, 206, 450
CviKI_1	RGCY	4 cut(s)	124, 193, 206, 450
CviQI	GTAC	3 cut(s)	199, 317, 473
DdeI	CTNAG	2 cut(s)	189, 556
Eam1104I	CTCTTC	1 cut(s)	137
EarI	CTCTTC	1 cut(s)	137
Eco32I	GATATC	1 cut(s)	186
Eco47I	GGWCC	1 cut(s)	540
Eco57I	CTGAAG	1 cut(s)	426
EcoRV	GATATC	1 cut(s)	186
FaeI	CATG	8 cut(s)	74, 238, 313, 418, 526, 532, 547, 555
FalI	AAGNNNNNCTT	2 cut(s)	194, 226
FaqI	GGGAC	2 cut(s)	233, 296
FatI	CATG	8 cut(s)	70, 234, 309, 414, 522, 528, 543, 551
FauI	CCCGC	1 cut(s)	326
FblI	GTMKAC	1 cut(s)	483
Fnu4HI	GCNGC	1 cut(s)	448
FokI	GGATG	1 cut(s)	509
Fsp4HI	GCNGC	1 cut(s)	448
FspBI	CTAG	1 cut(s)	221
GluI	GCNGC	1 cut(s)	448
GsaI	CCCAGC	1 cut(s)	428
HaeIII	GGCC	1 cut(s)	206
HapII	CCGG	1 cut(s)	194
Hin1II	CATG	8 cut(s)	74, 238, 313, 418, 526, 532, 547, 555
HincII	GTYRAC	1 cut(s)	508
HindII	GTYRAC	1 cut(s)	508
HinfI	GANTC	3 cut(s)	164, 337, 535
HpaII	CCGG	1 cut(s)	194
Hpy166II	GTNNAC	3 cut(s)	319, 484, 508
Hpy188I	TCNGA	3 cut(s)	86, 357, 369
Hpy188III	TCNNGA	2 cut(s)	211, 523
Hpy8I	GTNNAC	3 cut(s)	319, 484, 508
HpyAV	CCTTC	3 cut(s)	91, 123, 319
HpyCH4IV	ACGT	1 cut(s)	371
HpyCH4V	TGCA	2 cut(s)	11, 447
HpyF3I	CTNAG	2 cut(s)	189, 556
HpySE526I	ACGT	1 cut(s)	371
Hsp92II	CATG	8 cut(s)	74, 238, 313, 418, 526, 532, 547, 555
LpnPI	CCDG	6 cut(s)	41, 76, 87, 207, 410, 476
Lsp1109I	GCAGC	1 cut(s)	459
MaeI	CTAG	1 cut(s)	221
MaeII	ACGT	1 cut(s)	371
MboII	GAAGA	4 cut(s)	154, 193, 419, 467
MhlI	GDGCHC	1 cut(s)	220
MluCI	AATT	3 cut(s)	158, 295, 562
MlyI	GAGTC	2 cut(s)	158, 529
MmeI	TCCRAC	2 cut(s)	192, 220
MnlI	CCTC	4 cut(s)	29, 47, 323, 423
MseI	TTAA	2 cut(s)	294, 300
MslI	CAYNNNNRTG	2 cut(s)	419, 527
MspI	CCGG	1 cut(s)	194
Mva1269I	GAATGC	1 cut(s)	364
NlaIII	CATG	8 cut(s)	74, 238, 313, 418, 526, 532, 547, 555
NspI	RCATGY	2 cut(s)	74, 555
NspV	TTCGAA	1 cut(s)	340
PagI	TCATGA	1 cut(s)	522
PciI	ACATGT	1 cut(s)	70
PctI	GAATGC	1 cut(s)	364
PfeI	GAWTC	1 cut(s)	337
PflFI	GACNNNGTC	1 cut(s)	538
PflMI	CCANNNNNTGG	1 cut(s)	469
PkrI	GCNGC	1 cut(s)	449
PleI	GAGTC	2 cut(s)	158, 529
PpsI	GAGTC	2 cut(s)	158, 529
PscI	ACATGT	1 cut(s)	70
PshBI	ATTAAT	1 cut(s)	294
PspFI	CCCAGC	1 cut(s)	424
PspPI	GGNCC	1 cut(s)	540
PsyI	GACNNNGTC	1 cut(s)	538
RsaI	GTAC	3 cut(s)	200, 318, 474
RsaNI	GTAC	3 cut(s)	199, 317, 473
RseI	CAYNNNNRTG	2 cut(s)	419, 527
SaqAI	TTAA	2 cut(s)	294, 300
SatI	GCNGC	1 cut(s)	448
Sau96I	GGNCC	1 cut(s)	540
SchI	GAGTC	2 cut(s)	158, 529
SduI	GDGCHC	1 cut(s)	220
SetI	ASST	3 cut(s)	39, 374, 434
SfuI	TTCGAA	1 cut(s)	340
SinI	GGWCC	1 cut(s)	540
SmiMI	CAYNNNNRTG	2 cut(s)	419, 527
SmlI	CTYRAG	1 cut(s)	211
SmoI	CTYRAG	1 cut(s)	211
Sse9I	AATT	3 cut(s)	158, 295, 562
SsiI	CCGC	1 cut(s)	333
SspMI	CTAG	1 cut(s)	221
TaiI	ACGT	1 cut(s)	374
TaqI	TCGA	3 cut(s)	5, 21, 340
TaqII	GACCGA	1 cut(s)	528
TasI	AATT	3 cut(s)	158, 295, 562
TatI	WGTACW	2 cut(s)	198, 316
TfiI	GAWTC	1 cut(s)	337
Tru1I	TTAA	2 cut(s)	294, 300
Tru9I	TTAA	2 cut(s)	294, 300
TseI	GCWGC	1 cut(s)	447
TspDTI	ATGAA	5 cut(s)	150, 155, 298, 511, 560
TspGWI	ACGGA	1 cut(s)	61
Tth111I	GACNNNGTC	1 cut(s)	538
Van91I	CCANNNNNTGG	1 cut(s)	469
VpaK11BI	GGWCC	1 cut(s)	540
VspI	ATTAAT	1 cut(s)	294
XapI	RAATTY	1 cut(s)	158
XceI	RCATGY	2 cut(s)	74, 555
XmiI	GTMKAC	1 cut(s)	483
XspI	CTAG	1 cut(s)	221

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.