Prupe.8G125300_v2.0.a1

Belongs to the glycosyl hydrolase 13 family

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
Physical Location & Seq
Reverse (-)
15016070 .. 15016736
667 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G125300.1

Sequence Viewer

Length: 276 bp
ATGTATTTTCGGGGGGCTGATGATCAGGGATTCAATTGGGAATCAAGCAAGAAAGGAGGATGGTACAACTCTTTAAGACATTCTGTACCTCAACTAGCTACTTCCGGGATTACACATGTTTGGCTTCCTCCACCTTCTGATGCGATTTCACTTGAAGCGACGACACACAATATTCTAATGGCAAGGGGAACCATGACACTGGAGCTGACTACAATGCTGCCCCTGATACTGACCACAAAAACACAAAAGTCCAGAAAGAGCTTTCGGATTGGATGA

Protein Analysis

92

Amino Acids

10.19

Weight (kDa)

9.87

Isoelectric Point (pI)

46.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0017595)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 2 cut(s) 65, 87
AflIII ACRYGT 1 cut(s) 115
AgsI TTSAA 2 cut(s) 34, 155
AluBI AGCT 3 cut(s) 98, 205, 261
AluI AGCT 3 cut(s) 98, 205, 261
ApeKI GCWGC 1 cut(s) 217
AsuC2I CCSGG 1 cut(s) 106
BbvI GCAGC 1 cut(s) 204
BccI CCATC 1 cut(s) 54
BclI TGATCA 1 cut(s) 22
BcnI CCSGG 1 cut(s) 106
BfaI CTAG 1 cut(s) 95
BisI GCNGC 1 cut(s) 218
BlsI GCNGC 1 cut(s) 219
Bme1390I CCNGG 1 cut(s) 106
BmiI GGNNCC 1 cut(s) 190
BmrFI CCNGG 1 cut(s) 106
BmsI GCATC 1 cut(s) 130
BpmI CTGGAG 1 cut(s) 221
BpuMI CCSGG 1 cut(s) 106
Bse1I ACTGG 1 cut(s) 204
BseGI GGATG 1 cut(s) 65
BseNI ACTGG 1 cut(s) 204
BseXI GCAGC 1 cut(s) 204
BsiSI CCGG 1 cut(s) 105
Bsp143I GATC 1 cut(s) 22
BspLI GGNNCC 1 cut(s) 190
BsrI ACTGG 1 cut(s) 204
BssMI GATC 1 cut(s) 22
BstF5I GGATG 1 cut(s) 65
BstKTI GATC 1 cut(s) 25
BstMBI GATC 1 cut(s) 22
BstNSI RCATGY 1 cut(s) 119
BstSCI CCNGG 1 cut(s) 104
BstV1I GCAGC 1 cut(s) 204
BstXI CCANNNNNNTGG 1 cut(s) 199
BtsCI GGATG 1 cut(s) 65
BtsIMutI CAGTG 1 cut(s) 197
Csp6I GTAC 2 cut(s) 64, 86
CviAII CATG 2 cut(s) 116, 193
CviJI RGCY 5 cut(s) 17, 98, 124, 205, 261
CviKI_1 RGCY 5 cut(s) 17, 98, 124, 205, 261
CviQI GTAC 2 cut(s) 64, 86
DpnI GATC 1 cut(s) 24
DpnII GATC 1 cut(s) 22
FaeI CATG 2 cut(s) 119, 196
FaiI YATR 2 cut(s) 117, 194
FatI CATG 2 cut(s) 115, 192
FbaI TGATCA 1 cut(s) 22
Fnu4HI GCNGC 1 cut(s) 218
FokI GGATG 1 cut(s) 72
Fsp4HI GCNGC 1 cut(s) 218
FspBI CTAG 1 cut(s) 95
GluI GCNGC 1 cut(s) 218
GsuI CTGGAG 1 cut(s) 221
HapII CCGG 1 cut(s) 105
Hin1II CATG 2 cut(s) 119, 196
HinfI GANTC 2 cut(s) 30, 41
HpaII CCGG 1 cut(s) 105
Hpy188I TCNGA 2 cut(s) 139, 267
Hpy188III TCNNGA 1 cut(s) 252
Hpy99I CGWCG 1 cut(s) 163
HpyAV CCTTC 1 cut(s) 144
Hsp92II CATG 2 cut(s) 119, 196
Ksp22I TGATCA 1 cut(s) 22
Kzo9I GATC 1 cut(s) 22
LmnI GCTCC 1 cut(s) 202
LpnPI CCDG 5 cut(s) 11, 118, 185, 236, 265
Lsp1109I GCAGC 1 cut(s) 204
LweI GCATC 1 cut(s) 130
MaeI CTAG 1 cut(s) 95
MalI GATC 1 cut(s) 24
MboI GATC 1 cut(s) 22
MfeI CAATTG 1 cut(s) 34
MluCI AATT 1 cut(s) 34
MnlI CCTC 3 cut(s) 50, 99, 138
MseI TTAA 1 cut(s) 74
MspI CCGG 1 cut(s) 105
MspR9I CCNGG 1 cut(s) 106
MunI CAATTG 1 cut(s) 34
NciI CCSGG 1 cut(s) 106
NdeII GATC 1 cut(s) 22
NlaIII CATG 2 cut(s) 119, 196
NlaIV GGNNCC 1 cut(s) 190
NspI RCATGY 1 cut(s) 119
PciI ACATGT 1 cut(s) 115
PfeI GAWTC 2 cut(s) 30, 41
PfoI TCCNGGA 1 cut(s) 104
PkrI GCNGC 1 cut(s) 219
PscI ACATGT 1 cut(s) 115
PspN4I GGNNCC 1 cut(s) 190
RsaI GTAC 2 cut(s) 65, 87
RsaNI GTAC 2 cut(s) 64, 86
SaqAI TTAA 1 cut(s) 74
SatI GCNGC 1 cut(s) 218
Sau3AI GATC 1 cut(s) 22
ScrFI CCNGG 1 cut(s) 106
SetI ASST 5 cut(s) 91, 100, 136, 207, 263
SfaNI GCATC 1 cut(s) 130
Sse9I AATT 1 cut(s) 34
SspI AATATT 1 cut(s) 172
SspMI CTAG 1 cut(s) 95
StyD4I CCNGG 1 cut(s) 104
TasI AATT 1 cut(s) 34
TfiI GAWTC 2 cut(s) 30, 41
Tru1I TTAA 1 cut(s) 74
Tru9I TTAA 1 cut(s) 74
TscAI CASTG 1 cut(s) 204
TseI GCWGC 1 cut(s) 217
TspRI CASTG 1 cut(s) 204
XceI RCATGY 1 cut(s) 119
XspI CTAG 1 cut(s) 95
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.