Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0017595

Physical Location & Seq

Genomic Coordinates Forward (+)

8565561 .. 8567682

Gene Structure 2122 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG079700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

ATGGAGATAGAGAGGGAAAGAGGAGGAGAGCAGTACTGCAGGAGGAAGCTCAATGATCTCACGCCAAAATATGGAAGCCAGGATGAATTAAAGGCACTGGTAAAAACCTACCATGACAATGGGATACAGAGCATAGCAGATATTGTTATAGACCACAGATGTGCAGAGAAGAAAGATGAGAGACGAATATTGTGCATTTTTGAAGGAGGAACACCCGATGATCTCCTTGATTGGGGCCCGTCTCTTGTTTGCAGCGACGACACAGAGTTTTCTGATGGCAAGGGGAACCCTGATACTGGAAATAGCTGGAGTGGGGTACCTGACATTGATCACAAAAACACAAGAGTCCAGAATGAGCTCTCGTATTGGATGAATTGGTTAAAGACCGAAATTGGGTTCAGCGGATGGCGATTTGATTTTGTTCTGGGATATGCTCCAGAGTTCACCAAGTTGTATGTGGCAAACACAGAGCCTAATTTCTCAGTAGGAGAGTTTTGGAATCCCCTTGCTAAGGGAAGTGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00500 ko01100 ko04973 map00500 map01100 map04973

Pfam Domains

Protein Families

Alpha-amyl_C2 Alpha-amylase

Protein Analysis

174

Amino Acids

19.88

Weight (kDa)

4.73

Isoelectric Point (pI)

27.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017595)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g06030
malus_domestica	MD00G1215700.v1.1 MD15G1083100.v1.1
prunus_persica	Prupe.8G125300_v2.0.a1
pyrus_communis	pycom05g07400 pycom05g07450
rosa_chinensis	RchiOBHm_Chr6g0257211 RchiOBHm_Chr6g0257321
rosa_rugosa	Rorug05G0574100
rosa_samantha	Rh6AG092000 Rh6CG079700 Rh6DG075200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	316
AccB1I	GGYRCC	1 cut(s)	316
AccB7I	CCANNNNNTGG	1 cut(s)	71
AciI	CCGC	1 cut(s)	402
AfaI	GTAC	2 cut(s)	35, 318
AfiI	CCNNNNNNNGG	5 cut(s)	71, 232, 296, 393, 511
AgsI	TTSAA	1 cut(s)	203
AjnI	CCWGG	1 cut(s)	78
AleI	CACNNNNGTG	1 cut(s)	159
AluBI	AGCT	3 cut(s)	49, 306, 358
AluI	AGCT	3 cut(s)	49, 306, 358
Alw21I	GWGCWC	1 cut(s)	360
Alw26I	GTCTC	2 cut(s)	175, 246
AoxI	GGCC	1 cut(s)	235
ApaI	GGGCCC	1 cut(s)	239
ApeKI	GCWGC	1 cut(s)	252
Asp718I	GGTACC	1 cut(s)	316
AspS9I	GGNCC	2 cut(s)	235, 236
AsuHPI	GGTGA	1 cut(s)	436
BaeGI	GKGCMC	1 cut(s)	239
BanI	GGYRCC	1 cut(s)	316
BanII	GRGCYC	2 cut(s)	239, 360
Bbv12I	GWGCWC	1 cut(s)	360
BbvI	GCAGC	1 cut(s)	264
BccI	CCATC	2 cut(s)	269, 399
BcgI	CGANNNNNNTGC	2 cut(s)	174, 208
BciT130I	CCWGG	1 cut(s)	80
BciVI	GTATCC	1 cut(s)	117
BclI	TGATCA	1 cut(s)	328
BcoDI	GTCTC	2 cut(s)	175, 246
BfmI	CTRYAG	1 cut(s)	37
BfuI	GTATCC	1 cut(s)	117
BisI	GCNGC	1 cut(s)	253
BlsI	GCNGC	1 cut(s)	254
BmcAI	AGTACT	1 cut(s)	35
Bme1390I	CCNGG	1 cut(s)	80
BmgT120I	GGNCC	2 cut(s)	235, 236
BmiI	GGNNCC	4 cut(s)	236, 237, 287, 318
BmrFI	CCNGG	1 cut(s)	80
BpmI	CTGGAG	2 cut(s)	328, 420
Bpu10I	CCTNAGC	1 cut(s)	510
Bsc4I	CCNNNNNNNGG	5 cut(s)	71, 232, 296, 393, 511
Bse1I	ACTGG	2 cut(s)	102, 301
BseBI	CCWGG	1 cut(s)	80
BseGI	GGATG	3 cut(s)	88, 375, 410
BseLI	CCNNNNNNNGG	5 cut(s)	71, 232, 296, 393, 511
BseMII	CTCAG	1 cut(s)	495
BseNI	ACTGG	2 cut(s)	102, 301
BseRI	GAGGAG	2 cut(s)	36, 39
BseSI	GKGCMC	1 cut(s)	239
BseXI	GCAGC	1 cut(s)	264
BsgI	GTGCAG	1 cut(s)	183
BshFI	GGCC	1 cut(s)	237
BshNI	GGYRCC	1 cut(s)	316
BsiHKAI	GWGCWC	1 cut(s)	360
BslI	CCNNNNNNNGG	5 cut(s)	71, 232, 296, 393, 511
BsmAI	GTCTC	2 cut(s)	175, 246
BsmBI	CGTCTC	2 cut(s)	175, 246
BsnI	GGCC	1 cut(s)	237
Bsp120I	GGGCCC	1 cut(s)	235
Bsp1286I	GDGCHC	2 cut(s)	239, 360
Bsp143I	GATC	3 cut(s)	55, 220, 328
BspACI	CCGC	1 cut(s)	402
BspANI	GGCC	1 cut(s)	237
BspCNI	CTCAG	1 cut(s)	494
BspLI	GGNNCC	4 cut(s)	236, 237, 287, 318
BspMAI	CTGCAG	1 cut(s)	41
BspT107I	GGYRCC	1 cut(s)	316
BsrI	ACTGG	2 cut(s)	102, 301
BssMI	GATC	3 cut(s)	55, 220, 328
Bst2UI	CCWGG	1 cut(s)	80
BstDEI	CTNAG	2 cut(s)	481, 510
BstENI	CCTNNNNNAGG	1 cut(s)	509
BstF5I	GGATG	3 cut(s)	88, 375, 410
BstKTI	GATC	3 cut(s)	58, 223, 331
BstMAI	GTCTC	2 cut(s)	175, 246
BstMBI	GATC	3 cut(s)	55, 220, 328
BstNI	CCWGG	1 cut(s)	80
BstSCI	CCNGG	1 cut(s)	78
BstSFI	CTRYAG	1 cut(s)	37
BstSLI	GKGCMC	1 cut(s)	239
BstV1I	GCAGC	1 cut(s)	264
BstXI	CCANNNNNNTGG	1 cut(s)	119
BsuI	GTATCC	1 cut(s)	117
BsuRI	GGCC	1 cut(s)	237
BtsCI	GGATG	3 cut(s)	88, 375, 410
BtsIMutI	CAGTG	1 cut(s)	95
Cfr13I	GGNCC	2 cut(s)	235, 236
Csp6I	GTAC	2 cut(s)	34, 317
CviAII	CATG	1 cut(s)	113
CviJI	RGCY	6 cut(s)	49, 78, 237, 306, 358, 472
CviKI_1	RGCY	6 cut(s)	49, 78, 237, 306, 358, 472
CviQI	GTAC	2 cut(s)	34, 317
DdeI	CTNAG	2 cut(s)	481, 510
DpnI	GATC	3 cut(s)	57, 222, 330
DpnII	GATC	3 cut(s)	55, 220, 328
Ecl136II	GAGCTC	1 cut(s)	358
Eco24I	GRGCYC	2 cut(s)	239, 360
Eco53kI	GAGCTC	1 cut(s)	358
EcoICRI	GAGCTC	1 cut(s)	358
EcoNI	CCTNNNNNAGG	1 cut(s)	509
EcoO109I	RGGNCCY	1 cut(s)	235
EcoRII	CCWGG	1 cut(s)	78
EcoT38I	GRGCYC	2 cut(s)	239, 360
Esp3I	CGTCTC	2 cut(s)	175, 246
FaeI	CATG	1 cut(s)	116
FaiI	YATR	6 cut(s)	72, 114, 134, 149, 432, 456
FatI	CATG	1 cut(s)	112
FbaI	TGATCA	1 cut(s)	328
Fnu4HI	GCNGC	1 cut(s)	253
FokI	GGATG	3 cut(s)	95, 382, 417
FriOI	GRGCYC	2 cut(s)	239, 360
Fsp4HI	GCNGC	1 cut(s)	253
GluI	GCNGC	1 cut(s)	253
GsuI	CTGGAG	2 cut(s)	328, 420
HaeIII	GGCC	1 cut(s)	237
Hin1II	CATG	1 cut(s)	116
HinfI	GANTC	2 cut(s)	345, 499
HphI	GGTGA	1 cut(s)	436
Hpy166II	GTNNAC	1 cut(s)	444
Hpy188I	TCNGA	1 cut(s)	274
Hpy188III	TCNNGA	2 cut(s)	349, 437
Hpy8I	GTNNAC	1 cut(s)	444
Hpy99I	CGWCG	1 cut(s)	260
HpyAV	CCTTC	1 cut(s)	197
HpyCH4V	TGCA	4 cut(s)	39, 164, 195, 252
HpyF3I	CTNAG	2 cut(s)	481, 510
Hsp92II	CATG	1 cut(s)	116
KpnI	GGTACC	1 cut(s)	320
Ksp22I	TGATCA	1 cut(s)	328
Kzo9I	GATC	3 cut(s)	55, 220, 328
LmnI	GCTCC	1 cut(s)	439
Lsp1109I	GCAGC	1 cut(s)	264
MalI	GATC	3 cut(s)	57, 222, 330
MboI	GATC	3 cut(s)	55, 220, 328
MboII	GAAGA	1 cut(s)	181
MhlI	GDGCHC	2 cut(s)	239, 360
MluCI	AATT	4 cut(s)	86, 373, 390, 475
MlyI	GAGTC	1 cut(s)	354
MnlI	CCTC	5 cut(s)	6, 14, 17, 36, 200
MseI	TTAA	2 cut(s)	89, 380
MslI	CAYNNNNRTG	2 cut(s)	117, 159
MspA1I	CMGCKG	1 cut(s)	402
MspR9I	CCNGG	1 cut(s)	80
MvaI	CCWGG	1 cut(s)	80
NdeII	GATC	3 cut(s)	55, 220, 328
NlaIII	CATG	1 cut(s)	116
NlaIV	GGNNCC	4 cut(s)	236, 237, 287, 318
OliI	CACNNNNGTG	1 cut(s)	159
PfeI	GAWTC	1 cut(s)	499
PflMI	CCANNNNNTGG	1 cut(s)	71
PkrI	GCNGC	1 cut(s)	254
PleI	GAGTC	1 cut(s)	353
PpsI	GAGTC	1 cut(s)	353
Psp124BI	GAGCTC	1 cut(s)	360
Psp6I	CCWGG	1 cut(s)	78
PspGI	CCWGG	1 cut(s)	78
PspN4I	GGNNCC	4 cut(s)	236, 237, 287, 318
PspOMI	GGGCCC	1 cut(s)	235
PspPI	GGNCC	2 cut(s)	235, 236
PstI	CTGCAG	1 cut(s)	41
RsaI	GTAC	2 cut(s)	35, 318
RsaNI	GTAC	2 cut(s)	34, 317
RseI	CAYNNNNRTG	2 cut(s)	117, 159
SacI	GAGCTC	1 cut(s)	360
SaqAI	TTAA	2 cut(s)	89, 380
SatI	GCNGC	1 cut(s)	253
Sau3AI	GATC	3 cut(s)	55, 220, 328
Sau96I	GGNCC	2 cut(s)	235, 236
ScaI	AGTACT	1 cut(s)	35
SchI	GAGTC	1 cut(s)	354
ScrFI	CCNGG	1 cut(s)	80
SduI	GDGCHC	2 cut(s)	239, 360
SetI	ASST	5 cut(s)	51, 110, 308, 322, 360
SfcI	CTRYAG	1 cut(s)	37
SmiMI	CAYNNNNRTG	2 cut(s)	117, 159
Sse9I	AATT	4 cut(s)	86, 373, 390, 475
SsiI	CCGC	1 cut(s)	402
SspI	AATATT	1 cut(s)	189
SstI	GAGCTC	1 cut(s)	360
StyD4I	CCNGG	1 cut(s)	78
TaqII	GACCGA	1 cut(s)	401
TasI	AATT	4 cut(s)	86, 373, 390, 475
TatI	WGTACW	1 cut(s)	33
TfiI	GAWTC	1 cut(s)	499
Tru1I	TTAA	2 cut(s)	89, 380
Tru9I	TTAA	2 cut(s)	89, 380
TscAI	CASTG	1 cut(s)	102
TseI	GCWGC	1 cut(s)	252
TspDTI	ATGAA	2 cut(s)	99, 386
TspRI	CASTG	1 cut(s)	102
Van91I	CCANNNNNTGG	1 cut(s)	71
XagI	CCTNNNNNAGG	1 cut(s)	509
XcmI	CCANNNNNNNNNTGG	1 cut(s)	454
ZrmI	AGTACT	1 cut(s)	35

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.