Rh6AG092000

Belongs to the glycosyl hydrolase 13 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0017595
Physical Location & Seq
Forward (+)
13653331 .. 13655597
2267 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG092000.1

Sequence Viewer

Length: 714 bp
ATGAGATCATACTGTACCCGAGTGGATCAGGATGAGATCCACTTTCAAATTTCTAACTCAGAGAGTGAAATTACGAAGACTCTCACCAAAGAAGAAGACTTGCACCAAAACTTGACTTGGAAAAATGAGCGTAATGACAGTGATGAAAACGGAACCCTATATAGAATAAGCTCAACACTAAAGGGGTTCAATTGGGAATATCAGCAAAGAAGGGAGGATGGATACCTGCCTGGTAGGCTCAATGATCTCACGCCAAAATATGGAAGCCAGGATGAATTAAAGGCACTGGTAAAAACCTACCATGACAATGGGATACAGAGCATAGCAGATATTGTTATAGACCACAGATGTGCAGAGAAGAAAGATGAGAGACGAATATTGTGCATTTTTGAAGGAGGAACACCCGATGATCTCCTTGATTGGGGCCCGTCTCTTGTTTGCAGCGACGACACAGAGTTTTCTGATGGCAAGGGGAACCCTGATACTGGAAATAGCTGGAGTGGGGTACCTGACATTGATCACAAAAACACAAGAGTCCAGAATGAGCTCTCGTATTGGATGAATTGGTTAAAGACCGAAATTGGGTTCAGCGGATGGCGATTTGATTTTGTTCTGGGATATGCTCCAGAGTTCACCAAGTTGTATGTGGCAAACACAGAGCCTAATTTCTCAGTAGGAGAGTTTTGGAATCCCCTTGCTAAGGGAAGTGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00500 ko01100 ko04973 map00500 map01100 map04973
Pfam Domains
Protein Families
Alpha-amyl_C2 Alpha-amylase

Protein Analysis

237

Amino Acids

27.34

Weight (kDa)

4.71

Isoelectric Point (pI)

30.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017595)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g06030
malus_domestica MD00G1215700.v1.1 MD15G1083100.v1.1
prunus_persica Prupe.8G125300_v2.0.a1
pyrus_communis pycom05g07400 pycom05g07450
rosa_chinensis RchiOBHm_Chr6g0257211 RchiOBHm_Chr6g0257321
rosa_rugosa Rorug05G0574100
rosa_samantha Rh6AG092000 Rh6CG079700 Rh6DG075200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 234
Acc65I GGTACC 1 cut(s) 505
AccB1I GGYRCC 1 cut(s) 505
AccB7I CCANNNNNTGG 1 cut(s) 260
AciI CCGC 1 cut(s) 591
AclWI GGATC 2 cut(s) 31, 33
AcsI RAATTY 1 cut(s) 48
AfaI GTAC 2 cut(s) 16, 507
AfiI CCNNNNNNNGG 5 cut(s) 260, 421, 485, 582, 700
AgsI TTSAA 3 cut(s) 47, 190, 392
AjnI CCWGG 2 cut(s) 229, 267
AleI CACNNNNGTG 1 cut(s) 348
AluBI AGCT 3 cut(s) 171, 495, 547
AluI AGCT 3 cut(s) 171, 495, 547
Alw21I GWGCWC 1 cut(s) 549
Alw26I GTCTC 2 cut(s) 364, 435
AlwI GGATC 2 cut(s) 31, 33
Ama87I CYCGRG 1 cut(s) 18
AoxI GGCC 1 cut(s) 424
ApaI GGGCCC 1 cut(s) 428
ApeKI GCWGC 1 cut(s) 441
ApoI RAATTY 1 cut(s) 48
Asp718I GGTACC 1 cut(s) 505
AspS9I GGNCC 2 cut(s) 424, 425
AsuHPI GGTGA 2 cut(s) 76, 625
AvaI CYCGRG 1 cut(s) 18
BaeGI GKGCMC 1 cut(s) 428
BanI GGYRCC 1 cut(s) 505
BanII GRGCYC 2 cut(s) 428, 549
BbsI GAAGAC 2 cut(s) 83, 102
Bbv12I GWGCWC 1 cut(s) 549
BbvI GCAGC 1 cut(s) 453
BccI CCATC 3 cut(s) 212, 458, 588
BcgI CGANNNNNNTGC 2 cut(s) 363, 397
BciT130I CCWGG 2 cut(s) 231, 269
BciVI GTATCC 2 cut(s) 215, 306
BclI TGATCA 1 cut(s) 517
BcoDI GTCTC 2 cut(s) 364, 435
BfuAI ACCTGC 1 cut(s) 234
BfuI GTATCC 2 cut(s) 215, 306
BglI GCCNNNNNGGC 1 cut(s) 235
BisI GCNGC 1 cut(s) 442
BlsI GCNGC 1 cut(s) 443
Bme1390I CCNGG 2 cut(s) 231, 269
BmeT110I CYCGRG 1 cut(s) 18
BmgT120I GGNCC 2 cut(s) 424, 425
BmiI GGNNCC 5 cut(s) 154, 425, 426, 476, 507
BmrFI CCNGG 2 cut(s) 231, 269
BpiI GAAGAC 2 cut(s) 83, 102
BpmI CTGGAG 2 cut(s) 517, 609
Bpu10I CCTNAGC 1 cut(s) 699
Bsc4I CCNNNNNNNGG 5 cut(s) 260, 421, 485, 582, 700
Bse1I ACTGG 2 cut(s) 291, 490
BseBI CCWGG 2 cut(s) 231, 269
BseGI GGATG 5 cut(s) 37, 223, 277, 564, 599
BseLI CCNNNNNNNGG 5 cut(s) 260, 421, 485, 582, 700
BseMII CTCAG 2 cut(s) 72, 684
BseNI ACTGG 2 cut(s) 291, 490
BseSI GKGCMC 1 cut(s) 428
BseXI GCAGC 1 cut(s) 453
BsgI GTGCAG 1 cut(s) 372
BshFI GGCC 1 cut(s) 426
BshNI GGYRCC 1 cut(s) 505
BsiHKAI GWGCWC 1 cut(s) 549
BsiHKCI CYCGRG 1 cut(s) 18
BslI CCNNNNNNNGG 5 cut(s) 260, 421, 485, 582, 700
BsmAI GTCTC 2 cut(s) 364, 435
BsmBI CGTCTC 2 cut(s) 364, 435
BsnI GGCC 1 cut(s) 426
BsoBI CYCGRG 1 cut(s) 18
Bsp120I GGGCCC 1 cut(s) 424
Bsp1286I GDGCHC 2 cut(s) 428, 549
Bsp143I GATC 6 cut(s) 5, 25, 36, 244, 409, 517
BspACI CCGC 1 cut(s) 591
BspANI GGCC 1 cut(s) 426
BspCNI CTCAG 2 cut(s) 71, 683
BspLI GGNNCC 5 cut(s) 154, 425, 426, 476, 507
BspMI ACCTGC 1 cut(s) 234
BspPI GGATC 2 cut(s) 31, 33
BspT107I GGYRCC 1 cut(s) 505
BsrI ACTGG 2 cut(s) 291, 490
BssMI GATC 6 cut(s) 5, 25, 36, 244, 409, 517
Bst2UI CCWGG 2 cut(s) 231, 269
Bst4CI ACNGT 2 cut(s) 14, 140
BstDEI CTNAG 3 cut(s) 58, 670, 699
BstENI CCTNNNNNAGG 1 cut(s) 698
BstF5I GGATG 5 cut(s) 37, 223, 277, 564, 599
BstKTI GATC 6 cut(s) 8, 28, 39, 247, 412, 520
BstMAI GTCTC 2 cut(s) 364, 435
BstMBI GATC 6 cut(s) 5, 25, 36, 244, 409, 517
BstMWI GCNNNNNNNGC 1 cut(s) 235
BstNI CCWGG 2 cut(s) 231, 269
BstSCI CCNGG 2 cut(s) 229, 267
BstSLI GKGCMC 1 cut(s) 428
BstV1I GCAGC 1 cut(s) 453
BstV2I GAAGAC 2 cut(s) 83, 102
BstX2I RGATCY 1 cut(s) 36
BstXI CCANNNNNNTGG 1 cut(s) 308
BstYI RGATCY 1 cut(s) 36
BsuI GTATCC 2 cut(s) 215, 306
BsuRI GGCC 1 cut(s) 426
BtsCI GGATG 5 cut(s) 37, 223, 277, 564, 599
BtsIMutI CAGTG 2 cut(s) 145, 284
BveI ACCTGC 1 cut(s) 234
Cfr13I GGNCC 2 cut(s) 424, 425
Csp6I GTAC 2 cut(s) 15, 506
CviAII CATG 1 cut(s) 302
CviJI RGCY 7 cut(s) 171, 238, 267, 426, 495, 547, 661
CviKI_1 RGCY 7 cut(s) 171, 238, 267, 426, 495, 547, 661
CviQI GTAC 2 cut(s) 15, 506
DdeI CTNAG 3 cut(s) 58, 670, 699
DpnI GATC 6 cut(s) 7, 27, 38, 246, 411, 519
DpnII GATC 6 cut(s) 5, 25, 36, 244, 409, 517
Ecl136II GAGCTC 1 cut(s) 547
Eco24I GRGCYC 2 cut(s) 428, 549
Eco53kI GAGCTC 1 cut(s) 547
Eco88I CYCGRG 1 cut(s) 18
EcoICRI GAGCTC 1 cut(s) 547
EcoNI CCTNNNNNAGG 1 cut(s) 698
EcoO109I RGGNCCY 1 cut(s) 424
EcoRII CCWGG 2 cut(s) 229, 267
EcoT38I GRGCYC 2 cut(s) 428, 549
Esp3I CGTCTC 2 cut(s) 364, 435
FaeI CATG 1 cut(s) 305
FaiI YATR 9 cut(s) 10, 160, 162, 261, 303, 323, 338, 621, 645
FatI CATG 1 cut(s) 301
FbaI TGATCA 1 cut(s) 517
Fnu4HI GCNGC 1 cut(s) 442
FokI GGATG 5 cut(s) 44, 230, 284, 571, 606
FriOI GRGCYC 2 cut(s) 428, 549
Fsp4HI GCNGC 1 cut(s) 442
GluI GCNGC 1 cut(s) 442
GsuI CTGGAG 2 cut(s) 517, 609
HaeIII GGCC 1 cut(s) 426
Hin1II CATG 1 cut(s) 305
HinfI GANTC 3 cut(s) 79, 534, 688
HphI GGTGA 2 cut(s) 76, 625
Hpy166II GTNNAC 1 cut(s) 633
Hpy188I TCNGA 2 cut(s) 61, 463
Hpy188III TCNNGA 3 cut(s) 29, 538, 626
Hpy8I GTNNAC 1 cut(s) 633
Hpy99I CGWCG 1 cut(s) 449
HpyAV CCTTC 2 cut(s) 204, 386
HpyCH4III ACNGT 2 cut(s) 14, 140
HpyCH4V TGCA 4 cut(s) 103, 353, 384, 441
HpyF10VI GCNNNNNNNGC 1 cut(s) 235
HpyF3I CTNAG 3 cut(s) 58, 670, 699
Hsp92II CATG 1 cut(s) 305
KpnI GGTACC 1 cut(s) 509
Ksp22I TGATCA 1 cut(s) 517
Kzo9I GATC 6 cut(s) 5, 25, 36, 244, 409, 517
LmnI GCTCC 1 cut(s) 628
Lsp1109I GCAGC 1 cut(s) 453
MalI GATC 6 cut(s) 7, 27, 38, 246, 411, 519
MboI GATC 6 cut(s) 5, 25, 36, 244, 409, 517
MboII GAAGA 4 cut(s) 88, 104, 107, 370
MfeI CAATTG 1 cut(s) 190
MflI RGATCY 1 cut(s) 36
MhlI GDGCHC 2 cut(s) 428, 549
MluCI AATT 7 cut(s) 48, 69, 190, 275, 562, 579, 664
MlyI GAGTC 2 cut(s) 73, 543
MnlI CCTC 2 cut(s) 208, 389
MseI TTAA 2 cut(s) 278, 569
MslI CAYNNNNRTG 2 cut(s) 306, 348
MspA1I CMGCKG 1 cut(s) 591
MspR9I CCNGG 2 cut(s) 231, 269
MunI CAATTG 1 cut(s) 190
MvaI CCWGG 2 cut(s) 231, 269
MwoI GCNNNNNNNGC 1 cut(s) 235
NdeII GATC 6 cut(s) 5, 25, 36, 244, 409, 517
NlaIII CATG 1 cut(s) 305
NlaIV GGNNCC 5 cut(s) 154, 425, 426, 476, 507
OliI CACNNNNGTG 1 cut(s) 348
PfeI GAWTC 1 cut(s) 688
PflMI CCANNNNNTGG 1 cut(s) 260
PkrI GCNGC 1 cut(s) 443
PleI GAGTC 2 cut(s) 73, 542
PpsI GAGTC 2 cut(s) 73, 542
Psp124BI GAGCTC 1 cut(s) 549
Psp6I CCWGG 2 cut(s) 229, 267
PspGI CCWGG 2 cut(s) 229, 267
PspN4I GGNNCC 5 cut(s) 154, 425, 426, 476, 507
PspOMI GGGCCC 1 cut(s) 424
PspPI GGNCC 2 cut(s) 424, 425
PsuI RGATCY 1 cut(s) 36
RsaI GTAC 2 cut(s) 16, 507
RsaNI GTAC 2 cut(s) 15, 506
RseI CAYNNNNRTG 2 cut(s) 306, 348
SacI GAGCTC 1 cut(s) 549
SaqAI TTAA 2 cut(s) 278, 569
SatI GCNGC 1 cut(s) 442
Sau3AI GATC 6 cut(s) 5, 25, 36, 244, 409, 517
Sau96I GGNCC 2 cut(s) 424, 425
SchI GAGTC 2 cut(s) 73, 543
ScrFI CCNGG 2 cut(s) 231, 269
SduI GDGCHC 2 cut(s) 428, 549
SetI ASST 6 cut(s) 173, 228, 299, 497, 511, 549
SmiMI CAYNNNNRTG 2 cut(s) 306, 348
Sse9I AATT 7 cut(s) 48, 69, 190, 275, 562, 579, 664
SsiI CCGC 1 cut(s) 591
SspI AATATT 1 cut(s) 378
SstI GAGCTC 1 cut(s) 549
StyD4I CCNGG 2 cut(s) 229, 267
TaaI ACNGT 2 cut(s) 14, 140
TaqII GACCGA 1 cut(s) 590
TasI AATT 7 cut(s) 48, 69, 190, 275, 562, 579, 664
TfiI GAWTC 1 cut(s) 688
Tru1I TTAA 2 cut(s) 278, 569
Tru9I TTAA 2 cut(s) 278, 569
TscAI CASTG 2 cut(s) 145, 291
TseI GCWGC 1 cut(s) 441
TspDTI ATGAA 3 cut(s) 159, 288, 575
TspGWI ACGGA 1 cut(s) 165
TspRI CASTG 2 cut(s) 145, 291
Van91I CCANNNNNTGG 1 cut(s) 260
XagI CCTNNNNNAGG 1 cut(s) 698
XapI RAATTY 1 cut(s) 48
XcmI CCANNNNNNNNNTGG 1 cut(s) 643
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.