Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0017595

Physical Location & Seq

Genomic Coordinates Forward (+)

8486298 .. 8488014

Gene Structure 1717 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG075200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

ATGTTGCTCAATGATCTCACGCCAAAATATGGAAGCCAGGATGAATTAAAGGCACTGGTAAAAACCTACCATGACAATGGGATACAGAGCATAGCAGATATTGTTATAGACCACAGATGTGCAGAGAAGAAAGATGAGAGACGAATATTGTGCATTTTTGAAGGAGGAACACCCGATGATCTCCTTGATTGGGGCCCGTCTCTTGTTTGCAGCGACGACACAGAGTTTTCTGATGGCAAGGGGAACCCTGATACTGGAAATAGCTGGAGTGGGGTACCTGACATTGATCACAAAAACACAAGAGTCCAGAATGAGCTCTCGTATTGGATGAATTGGTTAAAGACCGAAATTGGGTTCAGCGGATGGCGATTTGATTTTGTTCTGGGATATGCTCCAGAGTTCACCAAGTTGTATGTGGCAAACACAGAGCCTAATTTCTCAGTAGGAGAGTTTTGGAATCCCCTTGCTAAGGGAAGTGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00500 ko01100 ko04973 map00500 map01100 map04973

Pfam Domains

Protein Families

Alpha-amyl_C2 Alpha-amylase

Protein Analysis

160

Amino Acids

18.1

Weight (kDa)

4.54

Isoelectric Point (pI)

21.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0017595)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g06030
malus_domestica	MD00G1215700.v1.1 MD15G1083100.v1.1
prunus_persica	Prupe.8G125300_v2.0.a1
pyrus_communis	pycom05g07400 pycom05g07450
rosa_chinensis	RchiOBHm_Chr6g0257211 RchiOBHm_Chr6g0257321
rosa_rugosa	Rorug05G0574100
rosa_samantha	Rh6AG092000 Rh6CG079700 Rh6DG075200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	274
AccB1I	GGYRCC	1 cut(s)	274
AccB7I	CCANNNNNTGG	1 cut(s)	29
AciI	CCGC	1 cut(s)	360
AfaI	GTAC	1 cut(s)	276
AfiI	CCNNNNNNNGG	5 cut(s)	29, 190, 254, 351, 469
AgsI	TTSAA	1 cut(s)	161
AjnI	CCWGG	1 cut(s)	36
AleI	CACNNNNGTG	1 cut(s)	117
AluBI	AGCT	2 cut(s)	264, 316
AluI	AGCT	2 cut(s)	264, 316
Alw21I	GWGCWC	1 cut(s)	318
Alw26I	GTCTC	2 cut(s)	133, 204
AoxI	GGCC	1 cut(s)	193
ApaI	GGGCCC	1 cut(s)	197
ApeKI	GCWGC	1 cut(s)	210
Asp718I	GGTACC	1 cut(s)	274
AspS9I	GGNCC	2 cut(s)	193, 194
AsuHPI	GGTGA	1 cut(s)	394
BaeGI	GKGCMC	1 cut(s)	197
BanI	GGYRCC	1 cut(s)	274
BanII	GRGCYC	2 cut(s)	197, 318
Bbv12I	GWGCWC	1 cut(s)	318
BbvI	GCAGC	1 cut(s)	222
BccI	CCATC	2 cut(s)	227, 357
BcgI	CGANNNNNNTGC	2 cut(s)	132, 166
BciT130I	CCWGG	1 cut(s)	38
BciVI	GTATCC	1 cut(s)	75
BclI	TGATCA	1 cut(s)	286
BcoDI	GTCTC	2 cut(s)	133, 204
BfuI	GTATCC	1 cut(s)	75
BisI	GCNGC	1 cut(s)	211
BlsI	GCNGC	1 cut(s)	212
Bme1390I	CCNGG	1 cut(s)	38
BmgT120I	GGNCC	2 cut(s)	193, 194
BmiI	GGNNCC	4 cut(s)	194, 195, 245, 276
BmrFI	CCNGG	1 cut(s)	38
BpmI	CTGGAG	2 cut(s)	286, 378
Bpu10I	CCTNAGC	1 cut(s)	468
Bsc4I	CCNNNNNNNGG	5 cut(s)	29, 190, 254, 351, 469
Bse1I	ACTGG	2 cut(s)	60, 259
BseBI	CCWGG	1 cut(s)	38
BseGI	GGATG	3 cut(s)	46, 333, 368
BseLI	CCNNNNNNNGG	5 cut(s)	29, 190, 254, 351, 469
BseMII	CTCAG	1 cut(s)	453
BseNI	ACTGG	2 cut(s)	60, 259
BseSI	GKGCMC	1 cut(s)	197
BseXI	GCAGC	1 cut(s)	222
BsgI	GTGCAG	1 cut(s)	141
BshFI	GGCC	1 cut(s)	195
BshNI	GGYRCC	1 cut(s)	274
BsiHKAI	GWGCWC	1 cut(s)	318
BslI	CCNNNNNNNGG	5 cut(s)	29, 190, 254, 351, 469
BsmAI	GTCTC	2 cut(s)	133, 204
BsmBI	CGTCTC	2 cut(s)	133, 204
BsnI	GGCC	1 cut(s)	195
Bsp120I	GGGCCC	1 cut(s)	193
Bsp1286I	GDGCHC	2 cut(s)	197, 318
Bsp143I	GATC	3 cut(s)	13, 178, 286
BspACI	CCGC	1 cut(s)	360
BspANI	GGCC	1 cut(s)	195
BspCNI	CTCAG	1 cut(s)	452
BspLI	GGNNCC	4 cut(s)	194, 195, 245, 276
BspT107I	GGYRCC	1 cut(s)	274
BsrI	ACTGG	2 cut(s)	60, 259
BssMI	GATC	3 cut(s)	13, 178, 286
Bst2UI	CCWGG	1 cut(s)	38
BstDEI	CTNAG	2 cut(s)	439, 468
BstENI	CCTNNNNNAGG	1 cut(s)	467
BstF5I	GGATG	3 cut(s)	46, 333, 368
BstKTI	GATC	3 cut(s)	16, 181, 289
BstMAI	GTCTC	2 cut(s)	133, 204
BstMBI	GATC	3 cut(s)	13, 178, 286
BstNI	CCWGG	1 cut(s)	38
BstSCI	CCNGG	1 cut(s)	36
BstSLI	GKGCMC	1 cut(s)	197
BstV1I	GCAGC	1 cut(s)	222
BstXI	CCANNNNNNTGG	1 cut(s)	77
BsuI	GTATCC	1 cut(s)	75
BsuRI	GGCC	1 cut(s)	195
BtsCI	GGATG	3 cut(s)	46, 333, 368
BtsIMutI	CAGTG	1 cut(s)	53
Cfr13I	GGNCC	2 cut(s)	193, 194
Csp6I	GTAC	1 cut(s)	275
CviAII	CATG	1 cut(s)	71
CviJI	RGCY	5 cut(s)	36, 195, 264, 316, 430
CviKI_1	RGCY	5 cut(s)	36, 195, 264, 316, 430
CviQI	GTAC	1 cut(s)	275
DdeI	CTNAG	2 cut(s)	439, 468
DpnI	GATC	3 cut(s)	15, 180, 288
DpnII	GATC	3 cut(s)	13, 178, 286
Ecl136II	GAGCTC	1 cut(s)	316
Eco24I	GRGCYC	2 cut(s)	197, 318
Eco53kI	GAGCTC	1 cut(s)	316
EcoICRI	GAGCTC	1 cut(s)	316
EcoNI	CCTNNNNNAGG	1 cut(s)	467
EcoO109I	RGGNCCY	1 cut(s)	193
EcoRII	CCWGG	1 cut(s)	36
EcoT38I	GRGCYC	2 cut(s)	197, 318
Esp3I	CGTCTC	2 cut(s)	133, 204
FaeI	CATG	1 cut(s)	74
FaiI	YATR	6 cut(s)	30, 72, 92, 107, 390, 414
FatI	CATG	1 cut(s)	70
FbaI	TGATCA	1 cut(s)	286
Fnu4HI	GCNGC	1 cut(s)	211
FokI	GGATG	3 cut(s)	53, 340, 375
FriOI	GRGCYC	2 cut(s)	197, 318
Fsp4HI	GCNGC	1 cut(s)	211
GluI	GCNGC	1 cut(s)	211
GsuI	CTGGAG	2 cut(s)	286, 378
HaeIII	GGCC	1 cut(s)	195
Hin1II	CATG	1 cut(s)	74
HinfI	GANTC	2 cut(s)	303, 457
HphI	GGTGA	1 cut(s)	394
Hpy166II	GTNNAC	1 cut(s)	402
Hpy188I	TCNGA	1 cut(s)	232
Hpy188III	TCNNGA	2 cut(s)	307, 395
Hpy8I	GTNNAC	1 cut(s)	402
Hpy99I	CGWCG	1 cut(s)	218
HpyAV	CCTTC	1 cut(s)	155
HpyCH4V	TGCA	3 cut(s)	122, 153, 210
HpyF3I	CTNAG	2 cut(s)	439, 468
Hsp92II	CATG	1 cut(s)	74
KpnI	GGTACC	1 cut(s)	278
Ksp22I	TGATCA	1 cut(s)	286
Kzo9I	GATC	3 cut(s)	13, 178, 286
LmnI	GCTCC	1 cut(s)	397
Lsp1109I	GCAGC	1 cut(s)	222
MalI	GATC	3 cut(s)	15, 180, 288
MboI	GATC	3 cut(s)	13, 178, 286
MboII	GAAGA	1 cut(s)	139
MhlI	GDGCHC	2 cut(s)	197, 318
MluCI	AATT	4 cut(s)	44, 331, 348, 433
MlyI	GAGTC	1 cut(s)	312
MnlI	CCTC	1 cut(s)	158
MseI	TTAA	2 cut(s)	47, 338
MslI	CAYNNNNRTG	2 cut(s)	75, 117
MspA1I	CMGCKG	1 cut(s)	360
MspR9I	CCNGG	1 cut(s)	38
MvaI	CCWGG	1 cut(s)	38
NdeII	GATC	3 cut(s)	13, 178, 286
NlaIII	CATG	1 cut(s)	74
NlaIV	GGNNCC	4 cut(s)	194, 195, 245, 276
OliI	CACNNNNGTG	1 cut(s)	117
PfeI	GAWTC	1 cut(s)	457
PflMI	CCANNNNNTGG	1 cut(s)	29
PkrI	GCNGC	1 cut(s)	212
PleI	GAGTC	1 cut(s)	311
PpsI	GAGTC	1 cut(s)	311
Psp124BI	GAGCTC	1 cut(s)	318
Psp6I	CCWGG	1 cut(s)	36
PspGI	CCWGG	1 cut(s)	36
PspN4I	GGNNCC	4 cut(s)	194, 195, 245, 276
PspOMI	GGGCCC	1 cut(s)	193
PspPI	GGNCC	2 cut(s)	193, 194
RsaI	GTAC	1 cut(s)	276
RsaNI	GTAC	1 cut(s)	275
RseI	CAYNNNNRTG	2 cut(s)	75, 117
SacI	GAGCTC	1 cut(s)	318
SaqAI	TTAA	2 cut(s)	47, 338
SatI	GCNGC	1 cut(s)	211
Sau3AI	GATC	3 cut(s)	13, 178, 286
Sau96I	GGNCC	2 cut(s)	193, 194
SchI	GAGTC	1 cut(s)	312
ScrFI	CCNGG	1 cut(s)	38
SduI	GDGCHC	2 cut(s)	197, 318
SetI	ASST	4 cut(s)	68, 266, 280, 318
SmiMI	CAYNNNNRTG	2 cut(s)	75, 117
Sse9I	AATT	4 cut(s)	44, 331, 348, 433
SsiI	CCGC	1 cut(s)	360
SspI	AATATT	1 cut(s)	147
SstI	GAGCTC	1 cut(s)	318
StyD4I	CCNGG	1 cut(s)	36
TaqII	GACCGA	1 cut(s)	359
TasI	AATT	4 cut(s)	44, 331, 348, 433
TfiI	GAWTC	1 cut(s)	457
Tru1I	TTAA	2 cut(s)	47, 338
Tru9I	TTAA	2 cut(s)	47, 338
TscAI	CASTG	1 cut(s)	60
TseI	GCWGC	1 cut(s)	210
TspDTI	ATGAA	2 cut(s)	57, 344
TspRI	CASTG	1 cut(s)	60
Van91I	CCANNNNNTGG	1 cut(s)	29
XagI	CCTNNNNNAGG	1 cut(s)	467
XcmI	CCANNNNNNNNNTGG	1 cut(s)	412

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.