Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0017595

Physical Location & Seq

Genomic Coordinates Reverse (-)

10418162 .. 10418747

Gene Structure 586 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g07450.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

ATGTTTGGCTTCCTCCATCTTCTCAAGCTGCTTCAGATGAAGGTATTTCTATACACGCCGGGAAGGCTTTATGATCTCAATTCAAAATATGGAAACAAAGATGAATTGAAGTCACTGGTAAGCGCGTACCGTGACAGTGGGATACAGTCTGTGGCAGATATAGTTATAAACCACAGAACTGCAGAGAAGCAAGACGAGAGAGGAATATGGTGCATCTTTGAAGGAGGAACTGACGATGATCGCCTTGATTGGGGCCCATCTCTTATTTGCAGCGATGATACAACTTATTCTGATGGCAAGGGGAACCCGGACACTGGAAAGGACTTCGGTGGTGCTCCAGACATTGATCACAAAAACACGAGGGTTCAGAAAGAGCTCTCGGATTGGATGAATTGGTTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00500 ko01100 ko04973 map00500 map01100 map04973

Pfam Domains

Protein Families

Alpha-amyl_C2 Alpha-amylase

Protein Analysis

134

Amino Acids

15.12

Weight (kDa)

4.93

Isoelectric Point (pI)

12.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017595)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g06030
malus_domestica	MD00G1215700.v1.1 MD15G1083100.v1.1
prunus_persica	Prupe.8G125300_v2.0.a1
pyrus_communis	pycom05g07400 pycom05g07450
rosa_chinensis	RchiOBHm_Chr6g0257211 RchiOBHm_Chr6g0257321
rosa_rugosa	Rorug05G0574100
rosa_samantha	Rh6AG092000 Rh6CG079700 Rh6DG075200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	167
AccII	CGCG	1 cut(s)	125
AcuI	CTGAAG	1 cut(s)	17
AfaI	GTAC	1 cut(s)	128
AfiI	CCNNNNNNNGG	2 cut(s)	250, 314
AgsI	TTSAA	3 cut(s)	84, 109, 221
AluBI	AGCT	2 cut(s)	28, 376
AluI	AGCT	2 cut(s)	28, 376
Alw21I	GWGCWC	2 cut(s)	337, 378
AoxI	GGCC	1 cut(s)	253
ApaI	GGGCCC	1 cut(s)	257
ApeKI	GCWGC	2 cut(s)	28, 270
AspLEI	GCGC	1 cut(s)	125
AspS9I	GGNCC	2 cut(s)	253, 254
AsuC2I	CCSGG	2 cut(s)	60, 308
BaeGI	GKGCMC	1 cut(s)	257
BanII	GRGCYC	2 cut(s)	257, 378
BauI	CACGAG	1 cut(s)	358
Bbv12I	GWGCWC	2 cut(s)	337, 378
BbvI	GCAGC	2 cut(s)	15, 282
BccI	CCATC	3 cut(s)	24, 265, 287
BciVI	GTATCC	1 cut(s)	135
BclI	TGATCA	1 cut(s)	346
BcnI	CCSGG	2 cut(s)	60, 308
BfmI	CTRYAG	1 cut(s)	180
BfuI	GTATCC	1 cut(s)	135
BglI	GCCNNNNNGGC	1 cut(s)	64
BisI	GCNGC	2 cut(s)	29, 271
BlsI	GCNGC	2 cut(s)	30, 272
Bme1390I	CCNGG	2 cut(s)	60, 308
BmgT120I	GGNCC	2 cut(s)	253, 254
BmiI	GGNNCC	3 cut(s)	254, 255, 305
BmrFI	CCNGG	2 cut(s)	60, 308
BmsI	GCATC	1 cut(s)	222
BpmI	CTGGAG	1 cut(s)	321
BpuEI	CTTGAG	1 cut(s)	8
BpuMI	CCSGG	2 cut(s)	60, 308
Bsc4I	CCNNNNNNNGG	2 cut(s)	250, 314
Bse1I	ACTGG	2 cut(s)	120, 319
BseGI	GGATG	1 cut(s)	393
BseLI	CCNNNNNNNGG	2 cut(s)	250, 314
BseNI	ACTGG	2 cut(s)	120, 319
BseSI	GKGCMC	1 cut(s)	257
BseXI	GCAGC	2 cut(s)	15, 282
Bsh1236I	CGCG	1 cut(s)	125
BshFI	GGCC	1 cut(s)	255
BsiHKAI	GWGCWC	2 cut(s)	337, 378
BsiSI	CCGG	2 cut(s)	59, 308
BslI	CCNNNNNNNGG	2 cut(s)	250, 314
BsnI	GGCC	1 cut(s)	255
Bsp120I	GGGCCC	1 cut(s)	253
Bsp1286I	GDGCHC	3 cut(s)	257, 337, 378
Bsp143I	GATC	3 cut(s)	73, 238, 346
BspANI	GGCC	1 cut(s)	255
BspFNI	CGCG	1 cut(s)	125
BspLI	GGNNCC	3 cut(s)	254, 255, 305
BspMAI	CTGCAG	1 cut(s)	184
BsrI	ACTGG	2 cut(s)	120, 319
BssMI	GATC	3 cut(s)	73, 238, 346
BssSI	CACGAG	1 cut(s)	358
Bst2BI	CACGAG	1 cut(s)	358
Bst4CI	ACNGT	3 cut(s)	131, 137, 147
BstF5I	GGATG	1 cut(s)	393
BstFNI	CGCG	1 cut(s)	125
BstHHI	GCGC	1 cut(s)	125
BstKTI	GATC	3 cut(s)	76, 241, 349
BstMBI	GATC	3 cut(s)	73, 238, 346
BstMWI	GCNNNNNNNGC	1 cut(s)	64
BstSCI	CCNGG	2 cut(s)	58, 306
BstSFI	CTRYAG	1 cut(s)	180
BstSLI	GKGCMC	1 cut(s)	257
BstUI	CGCG	1 cut(s)	125
BstV1I	GCAGC	2 cut(s)	15, 282
BsuI	GTATCC	1 cut(s)	135
BsuRI	GGCC	1 cut(s)	255
BtgZI	GCGATG	1 cut(s)	288
BtsCI	GGATG	1 cut(s)	393
BtsIMutI	CAGTG	3 cut(s)	113, 142, 312
CfoI	GCGC	1 cut(s)	125
Cfr13I	GGNCC	2 cut(s)	253, 254
Csp6I	GTAC	1 cut(s)	127
CviJI	RGCY	5 cut(s)	9, 28, 67, 255, 376
CviKI_1	RGCY	5 cut(s)	9, 28, 67, 255, 376
CviQI	GTAC	1 cut(s)	127
DpnI	GATC	3 cut(s)	75, 240, 348
DpnII	GATC	3 cut(s)	73, 238, 346
Ecl136II	GAGCTC	1 cut(s)	376
Eco24I	GRGCYC	2 cut(s)	257, 378
Eco53kI	GAGCTC	1 cut(s)	376
Eco57I	CTGAAG	1 cut(s)	17
EcoICRI	GAGCTC	1 cut(s)	376
EcoO109I	RGGNCCY	1 cut(s)	253
EcoT38I	GRGCYC	2 cut(s)	257, 378
FaiI	YATR	7 cut(s)	52, 72, 90, 161, 167, 208, 400
FbaI	TGATCA	1 cut(s)	346
Fnu4HI	GCNGC	2 cut(s)	29, 271
FriOI	GRGCYC	2 cut(s)	257, 378
Fsp4HI	GCNGC	2 cut(s)	29, 271
GlaI	GCGC	1 cut(s)	124
GluI	GCNGC	2 cut(s)	29, 271
GsuI	CTGGAG	1 cut(s)	321
HaeIII	GGCC	1 cut(s)	255
HapII	CCGG	2 cut(s)	59, 308
HhaI	GCGC	1 cut(s)	125
Hin6I	GCGC	1 cut(s)	123
HinP1I	GCGC	1 cut(s)	123
HpaII	CCGG	2 cut(s)	59, 308
Hpy188I	TCNGA	4 cut(s)	36, 292, 369, 382
Hpy188III	TCNNGA	1 cut(s)	338
HpyAV	CCTTC	3 cut(s)	34, 57, 215
HpyCH4III	ACNGT	3 cut(s)	131, 137, 147
HpyCH4V	TGCA	3 cut(s)	182, 213, 270
HpyF10VI	GCNNNNNNNGC	1 cut(s)	64
HspAI	GCGC	1 cut(s)	123
Ksp22I	TGATCA	1 cut(s)	346
Kzo9I	GATC	3 cut(s)	73, 238, 346
LmnI	GCTCC	1 cut(s)	340
LpnPI	CCDG	5 cut(s)	72, 101, 300, 321, 351
Lsp1109I	GCAGC	2 cut(s)	15, 282
LweI	GCATC	1 cut(s)	222
MaeIII	GTNAC	2 cut(s)	111, 131
MalI	GATC	3 cut(s)	75, 240, 348
MboI	GATC	3 cut(s)	73, 238, 346
MboII	GAAGA	1 cut(s)	11
MhlI	GDGCHC	3 cut(s)	257, 337, 378
MluCI	AATT	3 cut(s)	79, 104, 391
MnlI	CCTC	4 cut(s)	23, 194, 218, 354
MspI	CCGG	2 cut(s)	59, 308
MspR9I	CCNGG	2 cut(s)	60, 308
MvnI	CGCG	1 cut(s)	125
MwoI	GCNNNNNNNGC	1 cut(s)	64
NciI	CCSGG	2 cut(s)	60, 308
NdeII	GATC	3 cut(s)	73, 238, 346
NlaIV	GGNNCC	3 cut(s)	254, 255, 305
NmuCI	GTSAC	2 cut(s)	111, 131
PkrI	GCNGC	2 cut(s)	30, 272
PsiI	TTATAA	1 cut(s)	167
Psp124BI	GAGCTC	1 cut(s)	378
PspN4I	GGNNCC	3 cut(s)	254, 255, 305
PspOMI	GGGCCC	1 cut(s)	253
PspPI	GGNCC	2 cut(s)	253, 254
PstI	CTGCAG	1 cut(s)	184
RsaI	GTAC	1 cut(s)	128
RsaNI	GTAC	1 cut(s)	127
SacI	GAGCTC	1 cut(s)	378
SatI	GCNGC	2 cut(s)	29, 271
Sau3AI	GATC	3 cut(s)	73, 238, 346
Sau96I	GGNCC	2 cut(s)	253, 254
ScrFI	CCNGG	2 cut(s)	60, 308
SduI	GDGCHC	3 cut(s)	257, 337, 378
SetI	ASST	3 cut(s)	30, 45, 378
SfaNI	GCATC	1 cut(s)	222
SfcI	CTRYAG	1 cut(s)	180
SmlI	CTYRAG	1 cut(s)	23
SmoI	CTYRAG	1 cut(s)	23
Sse9I	AATT	3 cut(s)	79, 104, 391
SstI	GAGCTC	1 cut(s)	378
StyD4I	CCNGG	2 cut(s)	58, 306
TaaI	ACNGT	3 cut(s)	131, 137, 147
TasI	AATT	3 cut(s)	79, 104, 391
TscAI	CASTG	3 cut(s)	120, 142, 319
TseFI	GTSAC	2 cut(s)	111, 131
TseI	GCWGC	2 cut(s)	28, 270
Tsp45I	GTSAC	2 cut(s)	111, 131
TspDTI	ATGAA	2 cut(s)	53, 117
TspRI	CASTG	3 cut(s)	120, 142, 319

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.