Prupe.8G202900_v2.0.a1

Cytochrome b5

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0013843
Physical Location & Seq
Forward (+)
19103722 .. 19105639
1918 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G202900.1

Sequence Viewer

Length: 411 bp
ATGGCCGGAGGCAGCAAGGTCTACACTTTAGCTGAGGTCTCTGCTCACAGTGACCGCAAAGACTGCTGGCTCCTCATTGATGGCAAGGTATATGATGTAACGAAGTTCTTGGAGGACCATCCTGGCGGTGATGAGGTCTTATTGGCAGCCACAGGAAAGGATGCAAGTAATGATTTTGAGGATGTTGGCCACAGCTCCACTGCTAGAGCAATGATGGATGAATATTATGTCGGAGACATTGATTCATCATCCATCCCCACAAAGAGGGCGTACACTCCTCCCAAGCAGCCTTACTACAACCAGGACAAGACAACCGATTTCATCATCAAAATCCTCCAGTTCCTCGTTCCCCTGCTAATTTTGGGTTTGGCTTTTGGTGTCCGCTTCTATACCAAAACTTCAACAGCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cyt-b5

Protein Analysis

137

Amino Acids

15.04

Weight (kDa)

5.05

Isoelectric Point (pI)

30.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013843)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G48810
fragaria_vesca FvH4_2g19040
malus_domestica MD05G1175200.v1.1 MD10G1164300.v1.1
prunus_persica Prupe.8G202900_v2.0.a1 Prupe.8G202900_v2.0.a1
pyrus_communis pycom05g16210 pycom10g14170
rosa_chinensis RchiOBHm_Chr6g0284851
rosa_laevigata RLG00000012707
rosa_multiflora Rmu_sc0000686.1_g000017
rosa_roxburghii Rroxscaffold_7G00184300
rosa_rugosa Rorug06G0167500
rosa_samantha Rh6AG280200 Rh6BG280500 Rh6CG282500
rosa_wichuraiana Rw6G024080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 21
AciI CCGC 3 cut(s) 55, 126, 382
AcoI YGGCCR 2 cut(s) 3, 187
AfaI GTAC 1 cut(s) 272
AfiI CCNNNNNNNGG 1 cut(s) 264
AgsI TTSAA 1 cut(s) 402
AjnI CCWGG 2 cut(s) 121, 300
AluBI AGCT 2 cut(s) 32, 195
AluI AGCT 2 cut(s) 32, 195
Alw26I GTCTC 2 cut(s) 43, 228
AoxI GGCC 2 cut(s) 3, 187
ApeKI GCWGC 3 cut(s) 12, 146, 286
AspS9I GGNCC 1 cut(s) 115
AsuHPI GGTGA 1 cut(s) 140
AvaII GGWCC 1 cut(s) 115
BalI TGGCCA 1 cut(s) 189
BbvCI CCTCAGC 1 cut(s) 33
BbvI GCAGC 3 cut(s) 24, 158, 298
BccI CCATC 4 cut(s) 74, 126, 208, 260
BciT130I CCWGG 2 cut(s) 123, 302
BcoDI GTCTC 2 cut(s) 43, 228
BfaI CTAG 1 cut(s) 204
BisI GCNGC 3 cut(s) 13, 147, 287
BlsI GCNGC 3 cut(s) 14, 148, 288
Bme1390I CCNGG 2 cut(s) 123, 302
Bme18I GGWCC 1 cut(s) 115
BmgT120I GGNCC 1 cut(s) 115
BmiI GGNNCC 1 cut(s) 71
BmrFI CCNGG 2 cut(s) 123, 302
BmsI GCATC 1 cut(s) 151
BpmI CTGGAG 1 cut(s) 320
Bpu10I CCTNAGC 1 cut(s) 33
BsaI GGTCTC 1 cut(s) 43
Bsc4I CCNNNNNNNGG 1 cut(s) 264
Bse1I ACTGG 1 cut(s) 337
Bse3DI GCAATG 1 cut(s) 216
BseBI CCWGG 2 cut(s) 123, 302
BseGI GGATG 6 cut(s) 118, 166, 187, 223, 248, 252
BseLI CCNNNNNNNGG 1 cut(s) 264
BseMI GCAATG 1 cut(s) 216
BseMII CTCAG 1 cut(s) 24
BseNI ACTGG 1 cut(s) 337
BseRI GAGGAG 2 cut(s) 62, 267
BseXI GCAGC 3 cut(s) 24, 158, 298
BshFI GGCC 2 cut(s) 5, 189
BsiSI CCGG 1 cut(s) 6
BslI CCNNNNNNNGG 1 cut(s) 264
BsmAI GTCTC 2 cut(s) 43, 228
BsnI GGCC 2 cut(s) 5, 189
Bso31I GGTCTC 1 cut(s) 43
BspACI CCGC 3 cut(s) 55, 126, 382
BspANI GGCC 2 cut(s) 5, 189
BspCNI CTCAG 1 cut(s) 25
BspLI GGNNCC 1 cut(s) 71
BspTNI GGTCTC 1 cut(s) 43
BsrDI GCAATG 1 cut(s) 216
BsrI ACTGG 1 cut(s) 337
Bst2UI CCWGG 2 cut(s) 123, 302
Bst4CI ACNGT 1 cut(s) 50
BstAPI GCANNNNNTGC 1 cut(s) 63
BstC8I GCNNGC 1 cut(s) 68
BstDEI CTNAG 1 cut(s) 33
BstF5I GGATG 6 cut(s) 118, 166, 187, 223, 248, 252
BstMAI GTCTC 2 cut(s) 43, 228
BstMWI GCNNNNNNNGC 1 cut(s) 63
BstNI CCWGG 2 cut(s) 123, 302
BstSCI CCNGG 2 cut(s) 121, 300
BstV1I GCAGC 3 cut(s) 24, 158, 298
BsuRI GGCC 2 cut(s) 5, 189
BtsCI GGATG 6 cut(s) 118, 166, 187, 223, 248, 252
BtsI GCAGTG 1 cut(s) 198
BtsIMutI CAGTG 2 cut(s) 55, 198
Cac8I GCNNGC 1 cut(s) 68
Cfr13I GGNCC 1 cut(s) 115
Csp6I GTAC 1 cut(s) 271
CviJI RGCY 8 cut(s) 5, 32, 70, 149, 189, 195, 289, 371
CviKI_1 RGCY 8 cut(s) 5, 32, 70, 149, 189, 195, 289, 371
CviQI GTAC 1 cut(s) 271
DdeI CTNAG 1 cut(s) 33
EaeI YGGCCR 2 cut(s) 3, 187
Eco31I GGTCTC 1 cut(s) 43
Eco47I GGWCC 1 cut(s) 115
EcoRII CCWGG 2 cut(s) 121, 300
FaiI YATR 4 cut(s) 91, 93, 228, 390
FblI GTMKAC 1 cut(s) 21
Fnu4HI GCNGC 3 cut(s) 13, 147, 287
FokI GGATG 6 cut(s) 105, 173, 194, 230, 235, 239
Fsp4HI GCNGC 3 cut(s) 13, 147, 287
FspBI CTAG 1 cut(s) 204
GluI GCNGC 3 cut(s) 13, 147, 287
GsuI CTGGAG 1 cut(s) 320
HaeIII GGCC 2 cut(s) 5, 189
HapII CCGG 1 cut(s) 6
HinfI GANTC 1 cut(s) 242
HpaII CCGG 1 cut(s) 6
HphI GGTGA 1 cut(s) 140
Hpy166II GTNNAC 2 cut(s) 22, 273
Hpy188I TCNGA 1 cut(s) 233
Hpy8I GTNNAC 2 cut(s) 22, 273
HpyCH4III ACNGT 1 cut(s) 50
HpyCH4V TGCA 1 cut(s) 164
HpyF10VI GCNNNNNNNGC 1 cut(s) 63
HpyF3I CTNAG 1 cut(s) 33
LmnI GCTCC 2 cut(s) 75, 200
LpnPI CCDG 9 cut(s) 19, 52, 108, 135, 138, 287, 314, 350, 365
Lsp1109I GCAGC 3 cut(s) 24, 158, 298
LweI GCATC 1 cut(s) 151
MaeI CTAG 1 cut(s) 204
MaeIII GTNAC 2 cut(s) 50, 97
MlsI TGGCCA 1 cut(s) 189
MluCI AATT 1 cut(s) 357
MluNI TGGCCA 1 cut(s) 189
MmeI TCCRAC 1 cut(s) 211
MnlI CCTC 9 cut(s) 28, 83, 106, 127, 172, 258, 288, 344, 353
Mox20I TGGCCA 1 cut(s) 189
MscI TGGCCA 1 cut(s) 189
Msp20I TGGCCA 1 cut(s) 189
MspI CCGG 1 cut(s) 6
MspR9I CCNGG 2 cut(s) 123, 302
MvaI CCWGG 2 cut(s) 123, 302
MwoI GCNNNNNNNGC 1 cut(s) 63
NlaIV GGNNCC 1 cut(s) 71
NmuCI GTSAC 1 cut(s) 50
PfeI GAWTC 1 cut(s) 242
PkrI GCNGC 3 cut(s) 14, 148, 288
Psp6I CCWGG 2 cut(s) 121, 300
PspGI CCWGG 2 cut(s) 121, 300
PspN4I GGNNCC 1 cut(s) 71
PspPI GGNCC 1 cut(s) 115
RsaI GTAC 1 cut(s) 272
RsaNI GTAC 1 cut(s) 271
SatI GCNGC 3 cut(s) 13, 147, 287
Sau96I GGNCC 1 cut(s) 115
ScrFI CCNGG 2 cut(s) 123, 302
SetI ASST 6 cut(s) 21, 34, 39, 90, 138, 197
SfaNI GCATC 1 cut(s) 151
SinI GGWCC 1 cut(s) 115
Sse9I AATT 1 cut(s) 357
SsiI CCGC 3 cut(s) 55, 126, 382
SspI AATATT 1 cut(s) 224
SspMI CTAG 1 cut(s) 204
StyD4I CCNGG 2 cut(s) 121, 300
TaaI ACNGT 1 cut(s) 50
TasI AATT 1 cut(s) 357
TfiI GAWTC 1 cut(s) 242
TscAI CASTG 2 cut(s) 55, 205
TseFI GTSAC 1 cut(s) 50
TseI GCWGC 3 cut(s) 12, 146, 286
Tsp45I GTSAC 1 cut(s) 50
TspDTI ATGAA 3 cut(s) 234, 234, 310
TspRI CASTG 2 cut(s) 55, 205
VpaK11BI GGWCC 1 cut(s) 115
XmiI GTMKAC 1 cut(s) 21
XspI CTAG 1 cut(s) 204
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.