basic helix-loop-helix protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G09820 |
| fragaria_vesca | FvH4_2g23700 FvH4_2g23700 FvH4_2g23700 |
| malus_domestica | MD03G1266300.v1.1 MD11G1286900.v1.1 |
| prunus_persica | Prupe.8G242100_v2.0.a1 Prupe.8G242100_v2.0.a1 |
| pyrus_communis | pycom03g21290 pycom11g25430 |
| rosa_chinensis | RchiOBHm_Chr6g0291161 |
| rosa_laevigata | RLG00000012139 |
| rosa_multiflora | Rmu_sc0004642.1_g000024 |
| rosa_roxburghii | Rroxscaffold_7G00176330 |
| rosa_rugosa | Rorug06G0218000 Rorug06G0218100 |
| rosa_samantha | Rh6AG328500 Rh6BG336100 Rh6CG342100 Rh6DG329400 |
| rosa_wichuraiana | Rw6G028580 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 494 |
| Acc65I | GGTACC | 1 cut(s) | 1634 |
| AccB1I | GGYRCC | 3 cut(s) | 506, 1051, 1634 |
| AccBSI | CCGCTC | 2 cut(s) | 1458, 1477 |
| AccII | CGCG | 4 cut(s) | 710, 1032, 1128, 1239 |
| AccIII | TCCGGA | 1 cut(s) | 700 |
| AclWI | GGATC | 3 cut(s) | 116, 543, 1371 |
| AcoI | YGGCCR | 2 cut(s) | 824, 1545 |
| AcuI | CTGAAG | 1 cut(s) | 185 |
| AcyI | GRCGYC | 3 cut(s) | 47, 492, 1231 |
| AfaI | GTAC | 4 cut(s) | 131, 834, 1334, 1636 |
| AflIII | ACRYGT | 1 cut(s) | 708 |
| AgeI | ACCGGT | 1 cut(s) | 410 |
| AgsI | TTSAA | 3 cut(s) | 944, 1037, 1774 |
| AhdI | GACNNNNNGTC | 3 cut(s) | 75, 238, 709 |
| AjiI | CACGTC | 1 cut(s) | 1068 |
| AjnI | CCWGG | 3 cut(s) | 355, 370, 879 |
| AleI | CACNNNNGTG | 1 cut(s) | 1469 |
| Alw21I | GWGCWC | 3 cut(s) | 660, 1203, 1683 |
| Alw26I | GTCTC | 4 cut(s) | 83, 343, 934, 1742 |
| AlwI | GGATC | 3 cut(s) | 116, 543, 1371 |
| Ama87I | CYCGRG | 3 cut(s) | 296, 1482, 1496 |
| Aor13HI | TCCGGA | 1 cut(s) | 700 |
| AoxI | GGCC | 7 cut(s) | 192, 583, 633, 824, 1305, 1545, 1803 |
| ApeKI | GCWGC | 8 cut(s) | 5, 21, 33, 214, 394, 641, 664, 849 |
| AsiGI | ACCGGT | 1 cut(s) | 410 |
| Asp718I | GGTACC | 1 cut(s) | 1634 |
| AspLEI | GCGC | 3 cut(s) | 284, 786, 1208 |
| AspS9I | GGNCC | 8 cut(s) | 583, 611, 634, 875, 1185, 1479, 1490, 1803 |
| AsuC2I | CCSGG | 7 cut(s) | 266, 609, 1417, 1483, 1484, 1497, 1498 |
| AsuHPI | GGTGA | 6 cut(s) | 400, 1569, 1578, 1605, 1639, 1822 |
| AvaI | CYCGRG | 3 cut(s) | 296, 1482, 1496 |
| AvaII | GGWCC | 5 cut(s) | 611, 875, 1185, 1479, 1490 |
| BaeGI | GKGCMC | 2 cut(s) | 1067, 1284 |
| BanI | GGYRCC | 3 cut(s) | 506, 1051, 1634 |
| BanII | GRGCYC | 5 cut(s) | 660, 858, 1203, 1464, 1683 |
| BbsI | GAAGAC | 1 cut(s) | 164 |
| Bbv12I | GWGCWC | 3 cut(s) | 660, 1203, 1683 |
| BbvCI | CCTCAGC | 1 cut(s) | 1799 |
| BbvI | GCAGC | 7 cut(s) | 33, 45, 226, 406, 653, 676, 861 |
| BccI | CCATC | 4 cut(s) | 119, 152, 1381, 1561 |
| BceAI | ACGGC | 4 cut(s) | 505, 811, 1244, 1532 |
| BciT130I | CCWGG | 3 cut(s) | 357, 372, 881 |
| BclI | TGATCA | 1 cut(s) | 1396 |
| BcnI | CCSGG | 7 cut(s) | 266, 609, 1417, 1483, 1484, 1497, 1498 |
| BcoDI | GTCTC | 4 cut(s) | 83, 343, 934, 1742 |
| BfaI | CTAG | 9 cut(s) | 485, 503, 668, 743, 759, 957, 1277, 1643, 1894 |
| BfoI | RGCGCY | 2 cut(s) | 787, 1209 |
| BlpI | GCTNAGC | 2 cut(s) | 1202, 1794 |
| Bme18I | GGWCC | 5 cut(s) | 611, 875, 1185, 1479, 1490 |
| BmeRI | GACNNNNNGTC | 3 cut(s) | 75, 238, 709 |
| BmeT110I | CYCGRG | 3 cut(s) | 296, 1482, 1496 |
| BmgBI | CACGTC | 1 cut(s) | 1068 |
| BmgT120I | GGNCC | 8 cut(s) | 583, 611, 634, 875, 1185, 1479, 1490, 1803 |
| BmsI | GCATC | 1 cut(s) | 1150 |
| BoxI | GACNNNNGTC | 1 cut(s) | 1757 |
| BpiI | GAAGAC | 1 cut(s) | 164 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 551, 583 |
| BpmI | CTGGAG | 1 cut(s) | 606 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1799 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 1202, 1794 |
| BpuEI | CTTGAG | 1 cut(s) | 1388 |
| BpuMI | CCSGG | 7 cut(s) | 266, 609, 1417, 1483, 1484, 1497, 1498 |
| BsaAI | YACGTR | 2 cut(s) | 1336, 1376 |
| BsaHI | GRCGYC | 3 cut(s) | 47, 492, 1231 |
| BsaWI | WCCGGW | 2 cut(s) | 410, 700 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 545, 575 |
| Bse118I | RCCGGY | 2 cut(s) | 410, 819 |
| Bse1I | ACTGG | 2 cut(s) | 754, 1762 |
| BseAI | TCCGGA | 1 cut(s) | 700 |
| BseBI | CCWGG | 3 cut(s) | 357, 372, 881 |
| BseGI | GGATG | 3 cut(s) | 684, 1399, 1412 |
| BseMII | CTCAG | 5 cut(s) | 859, 1011, 1216, 1785, 1790 |
| BseNI | ACTGG | 2 cut(s) | 754, 1762 |
| BseRI | GAGGAG | 6 cut(s) | 403, 545, 557, 566, 905, 1586 |
| BseSI | GKGCMC | 2 cut(s) | 1067, 1284 |
| BseX3I | CGGCCG | 1 cut(s) | 1545 |
| BseXI | GCAGC | 7 cut(s) | 33, 45, 226, 406, 653, 676, 861 |
| BseYI | CCCAGC | 1 cut(s) | 769 |
| BsgI | GTGCAG | 2 cut(s) | 204, 1403 |
| Bsh1236I | CGCG | 4 cut(s) | 710, 1032, 1128, 1239 |
| Bsh1285I | CGRYCG | 2 cut(s) | 1329, 1548 |
| BshFI | GGCC | 7 cut(s) | 194, 585, 635, 826, 1307, 1547, 1805 |
| BshNI | GGYRCC | 3 cut(s) | 506, 1051, 1634 |
| BshTI | ACCGGT | 1 cut(s) | 410 |
| BsiEI | CGRYCG | 2 cut(s) | 1329, 1548 |
| BsiHKAI | GWGCWC | 3 cut(s) | 660, 1203, 1683 |
| BsiHKCI | CYCGRG | 3 cut(s) | 296, 1482, 1496 |
| BslFI | GGGAC | 4 cut(s) | 533, 1054, 1198, 1334 |
| BsmAI | GTCTC | 4 cut(s) | 83, 343, 934, 1742 |
| BsmBI | CGTCTC | 1 cut(s) | 1742 |
| BsmFI | GGGAC | 4 cut(s) | 533, 1054, 1198, 1334 |
| BsmI | GAATGC | 2 cut(s) | 474, 1010 |
| BsnI | GGCC | 7 cut(s) | 194, 585, 635, 826, 1307, 1547, 1805 |
| BsoBI | CYCGRG | 3 cut(s) | 296, 1482, 1496 |
| Bsp1286I | GDGCHC | 7 cut(s) | 660, 858, 1067, 1203, 1284, 1464, 1683 |
| Bsp13I | TCCGGA | 1 cut(s) | 700 |
| Bsp143I | GATC | 8 cut(s) | 108, 535, 775, 982, 1326, 1363, 1396, 1409 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 1202, 1794 |
| Bsp19I | CCATGG | 1 cut(s) | 171 |
| Bsp68I | TCGCGA | 1 cut(s) | 1239 |
| BspANI | GGCC | 7 cut(s) | 194, 585, 635, 826, 1307, 1547, 1805 |
| BspCNI | CTCAG | 5 cut(s) | 858, 1010, 1215, 1786, 1791 |
| BspEI | TCCGGA | 1 cut(s) | 700 |
| BspFNI | CGCG | 4 cut(s) | 710, 1032, 1128, 1239 |
| BspHI | TCATGA | 1 cut(s) | 1150 |
| BspPI | GGATC | 3 cut(s) | 116, 543, 1371 |
| BspT107I | GGYRCC | 3 cut(s) | 506, 1051, 1634 |
| BsrBI | CCGCTC | 2 cut(s) | 1458, 1477 |
| BsrFI | RCCGGY | 2 cut(s) | 410, 819 |
| BsrI | ACTGG | 2 cut(s) | 754, 1762 |
| BssAI | RCCGGY | 2 cut(s) | 410, 819 |
| BssMI | GATC | 8 cut(s) | 108, 535, 775, 982, 1326, 1363, 1396, 1409 |
| BssNI | GRCGYC | 3 cut(s) | 47, 492, 1231 |
| BssT1I | CCWWGG | 3 cut(s) | 171, 871, 1806 |
| Bst2UI | CCWGG | 3 cut(s) | 357, 372, 881 |
| Bst4CI | ACNGT | 9 cut(s) | 77, 163, 228, 466, 593, 928, 1404, 1468, 1756 |
| Bst6I | CTCTTC | 5 cut(s) | 86, 183, 204, 522, 1850 |
| BstACI | GRCGYC | 3 cut(s) | 47, 492, 1231 |
| BstBAI | YACGTR | 2 cut(s) | 1336, 1376 |
| BstC8I | GCNNGC | 8 cut(s) | 26, 45, 212, 271, 656, 854, 951, 1460 |
| BstDSI | CCRYGG | 1 cut(s) | 171 |
| BstF5I | GGATG | 3 cut(s) | 684, 1399, 1412 |
| BstFNI | CGCG | 4 cut(s) | 710, 1032, 1128, 1239 |
| BstH2I | RGCGCY | 2 cut(s) | 787, 1209 |
| BstHHI | GCGC | 3 cut(s) | 284, 786, 1208 |
| BstKTI | GATC | 8 cut(s) | 111, 538, 778, 985, 1329, 1366, 1399, 1412 |
| BstMAI | GTCTC | 4 cut(s) | 83, 343, 934, 1742 |
| BstMBI | GATC | 8 cut(s) | 108, 535, 775, 982, 1326, 1363, 1396, 1409 |
| BstMCI | CGRYCG | 2 cut(s) | 1329, 1548 |
| BstNI | CCWGG | 3 cut(s) | 357, 372, 881 |
| BstNSI | RCATGY | 3 cut(s) | 40, 401, 1048 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 1757 |
| BstSLI | GKGCMC | 2 cut(s) | 1067, 1284 |
| BstUI | CGCG | 4 cut(s) | 710, 1032, 1128, 1239 |
| BstV1I | GCAGC | 7 cut(s) | 33, 45, 226, 406, 653, 676, 861 |
| BstV2I | GAAGAC | 1 cut(s) | 164 |
| BstX2I | RGATCY | 2 cut(s) | 108, 1363 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 466 |
| BstYI | RGATCY | 2 cut(s) | 108, 1363 |
| BstZI | CGGCCG | 1 cut(s) | 1545 |
| BsuRI | GGCC | 7 cut(s) | 194, 585, 635, 826, 1307, 1547, 1805 |
| BtgI | CCRYGG | 1 cut(s) | 171 |
| BtgZI | GCGATG | 1 cut(s) | 1173 |
| BtrI | CACGTC | 1 cut(s) | 1068 |
| BtsCI | GGATG | 3 cut(s) | 684, 1399, 1412 |
| BtsI | GCAGTG | 1 cut(s) | 753 |
| BtsIMutI | CAGTG | 2 cut(s) | 187, 753 |
| BtuMI | TCGCGA | 1 cut(s) | 1239 |
| Cac8I | GCNNGC | 8 cut(s) | 26, 45, 212, 271, 656, 854, 951, 1460 |
| CciI | TCATGA | 1 cut(s) | 1150 |
| CfoI | GCGC | 3 cut(s) | 284, 786, 1208 |
| Cfr10I | RCCGGY | 2 cut(s) | 410, 819 |
| Cfr13I | GGNCC | 8 cut(s) | 583, 611, 634, 875, 1185, 1479, 1490, 1803 |
| Cfr9I | CCCGGG | 2 cut(s) | 1482, 1496 |
| CseI | GACGC | 5 cut(s) | 36, 481, 699, 716, 1220 |
| Csp6I | GTAC | 4 cut(s) | 130, 833, 1333, 1635 |
| CspAI | ACCGGT | 1 cut(s) | 410 |
| CviQI | GTAC | 4 cut(s) | 130, 833, 1333, 1635 |
| DpnI | GATC | 8 cut(s) | 110, 537, 777, 984, 1328, 1365, 1398, 1411 |
| DpnII | GATC | 8 cut(s) | 108, 535, 775, 982, 1326, 1363, 1396, 1409 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 494 |
| DriI | GACNNNNNGTC | 3 cut(s) | 75, 238, 709 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 494 |
| EaeI | YGGCCR | 2 cut(s) | 824, 1545 |
| EagI | CGGCCG | 1 cut(s) | 1545 |
| Eam1104I | CTCTTC | 5 cut(s) | 86, 183, 204, 522, 1850 |
| Eam1105I | GACNNNNNGTC | 3 cut(s) | 75, 238, 709 |
| EarI | CTCTTC | 5 cut(s) | 86, 183, 204, 522, 1850 |
| EciI | GGCGGA | 1 cut(s) | 1238 |
| Ecl136II | GAGCTC | 3 cut(s) | 658, 1201, 1681 |
| EclXI | CGGCCG | 1 cut(s) | 1545 |
| Eco130I | CCWWGG | 3 cut(s) | 171, 871, 1806 |
| Eco147I | AGGCCT | 2 cut(s) | 194, 1307 |
| Eco24I | GRGCYC | 5 cut(s) | 660, 858, 1203, 1464, 1683 |
| Eco32I | GATATC | 1 cut(s) | 1717 |
| Eco47I | GGWCC | 5 cut(s) | 611, 875, 1185, 1479, 1490 |
| Eco52I | CGGCCG | 1 cut(s) | 1545 |
| Eco53kI | GAGCTC | 3 cut(s) | 658, 1201, 1681 |
| Eco57I | CTGAAG | 1 cut(s) | 185 |
| Eco88I | CYCGRG | 3 cut(s) | 296, 1482, 1496 |
| EcoICRI | GAGCTC | 3 cut(s) | 658, 1201, 1681 |
| EcoO109I | RGGNCCY | 2 cut(s) | 875, 1185 |
| EcoRII | CCWGG | 3 cut(s) | 355, 370, 879 |
| EcoRV | GATATC | 1 cut(s) | 1717 |
| EcoT14I | CCWWGG | 3 cut(s) | 171, 871, 1806 |
| EcoT38I | GRGCYC | 5 cut(s) | 660, 858, 1203, 1464, 1683 |
| ErhI | CCWWGG | 3 cut(s) | 171, 871, 1806 |
| Esp3I | CGTCTC | 1 cut(s) | 1742 |
| FaqI | GGGAC | 4 cut(s) | 533, 1054, 1198, 1334 |
| FauI | CCCGC | 3 cut(s) | 646, 845, 1451 |
| FauNDI | CATATG | 1 cut(s) | 382 |
| FbaI | TGATCA | 1 cut(s) | 1396 |
| FokI | GGATG | 3 cut(s) | 671, 1399, 1406 |
| FriOI | GRGCYC | 5 cut(s) | 660, 858, 1203, 1464, 1683 |
| FspBI | CTAG | 9 cut(s) | 485, 503, 668, 743, 759, 957, 1277, 1643, 1894 |
| GlaI | GCGC | 3 cut(s) | 283, 785, 1207 |
| GsaI | CCCAGC | 1 cut(s) | 773 |
| GsuI | CTGGAG | 1 cut(s) | 606 |
| HaeII | RGCGCY | 2 cut(s) | 787, 1209 |
| HaeIII | GGCC | 7 cut(s) | 194, 585, 635, 826, 1307, 1547, 1805 |
| HgaI | GACGC | 5 cut(s) | 36, 481, 699, 716, 1220 |
| HhaI | GCGC | 3 cut(s) | 284, 786, 1208 |
| Hin1I | GRCGYC | 3 cut(s) | 47, 492, 1231 |
| Hin6I | GCGC | 3 cut(s) | 282, 784, 1206 |
| HinP1I | GCGC | 3 cut(s) | 282, 784, 1206 |
| HincII | GTYRAC | 3 cut(s) | 766, 813, 897 |
| HindII | GTYRAC | 3 cut(s) | 766, 813, 897 |
| HindIII | AAGCTT | 1 cut(s) | 1244 |
| HpaI | GTTAAC | 1 cut(s) | 766 |
| HphI | GGTGA | 6 cut(s) | 400, 1569, 1578, 1605, 1639, 1822 |
| Hpy166II | GTNNAC | 8 cut(s) | 98, 766, 813, 897, 963, 978, 1023, 1493 |
| Hpy188I | TCNGA | 9 cut(s) | 124, 316, 565, 571, 679, 730, 922, 1504, 1888 |
| Hpy8I | GTNNAC | 8 cut(s) | 98, 766, 813, 897, 963, 978, 1023, 1493 |
| Hpy99I | CGWCG | 6 cut(s) | 497, 500, 710, 1133, 1236, 1239 |
| HpyAV | CCTTC | 4 cut(s) | 352, 1593, 1694, 1807 |
| HpyCH4III | ACNGT | 9 cut(s) | 77, 163, 228, 466, 593, 928, 1404, 1468, 1756 |
| HpyCH4IV | ACGT | 4 cut(s) | 1067, 1335, 1375, 1380 |
| HpyCH4V | TGCA | 9 cut(s) | 8, 43, 166, 185, 416, 474, 664, 1384, 1723 |
| HpySE526I | ACGT | 4 cut(s) | 1067, 1335, 1375, 1380 |
| Hsp92I | GRCGYC | 3 cut(s) | 47, 492, 1231 |
| HspAI | GCGC | 3 cut(s) | 282, 784, 1206 |
| KflI | GGGWCCC | 1 cut(s) | 1185 |
| Kpn2I | TCCGGA | 1 cut(s) | 700 |
| KpnI | GGTACC | 1 cut(s) | 1638 |
| Ksp22I | TGATCA | 1 cut(s) | 1396 |
| KspAI | GTTAAC | 1 cut(s) | 766 |
| Kzo9I | GATC | 8 cut(s) | 108, 535, 775, 982, 1326, 1363, 1396, 1409 |
| Lsp1109I | GCAGC | 7 cut(s) | 33, 45, 226, 406, 653, 676, 861 |
| LweI | GCATC | 1 cut(s) | 1150 |
| MaeI | CTAG | 9 cut(s) | 485, 503, 668, 743, 759, 957, 1277, 1643, 1894 |
| MaeII | ACGT | 4 cut(s) | 1067, 1335, 1375, 1380 |
| MaeIII | GTNAC | 5 cut(s) | 1288, 1376, 1575, 1627, 1664 |
| MalI | GATC | 8 cut(s) | 110, 537, 777, 984, 1328, 1365, 1398, 1411 |
| MbiI | CCGCTC | 2 cut(s) | 1458, 1477 |
| MboI | GATC | 8 cut(s) | 108, 535, 775, 982, 1326, 1363, 1396, 1409 |
| MboII | GAAGA | 8 cut(s) | 73, 169, 191, 200, 539, 1366, 1777, 1867 |
| MfeI | CAATTG | 2 cut(s) | 1056, 1343 |
| MflI | RGATCY | 2 cut(s) | 108, 1363 |
| MhlI | GDGCHC | 7 cut(s) | 660, 858, 1067, 1203, 1284, 1464, 1683 |
| MluCI | AATT | 5 cut(s) | 718, 1056, 1343, 1743, 1875 |
| MluI | ACGCGT | 1 cut(s) | 708 |
| MlyI | GAGTC | 8 cut(s) | 227, 560, 569, 719, 788, 818, 1021, 1583 |
| MmeI | TCCRAC | 4 cut(s) | 738, 883, 1482, 1656 |
| MroI | TCCGGA | 1 cut(s) | 700 |
| MseI | TTAA | 5 cut(s) | 305, 765, 1083, 1248, 1517 |
| MslI | CAYNNNNRTG | 2 cut(s) | 1049, 1469 |
| MspA1I | CMGCKG | 3 cut(s) | 205, 626, 852 |
| MunI | CAATTG | 2 cut(s) | 1056, 1343 |
| Mva1269I | GAATGC | 2 cut(s) | 474, 1010 |
| MvaI | CCWGG | 3 cut(s) | 357, 372, 881 |
| MvnI | CGCG | 4 cut(s) | 710, 1032, 1128, 1239 |
| NciI | CCSGG | 7 cut(s) | 266, 609, 1417, 1483, 1484, 1497, 1498 |
| NcoI | CCATGG | 1 cut(s) | 171 |
| NdeI | CATATG | 1 cut(s) | 382 |
| NdeII | GATC | 8 cut(s) | 108, 535, 775, 982, 1326, 1363, 1396, 1409 |
| NmeAIII | GCCGAG | 3 cut(s) | 672, 675, 832 |
| NmuCI | GTSAC | 4 cut(s) | 1288, 1575, 1627, 1664 |
| NruI | TCGCGA | 1 cut(s) | 1239 |
| NspI | RCATGY | 3 cut(s) | 40, 401, 1048 |
| OliI | CACNNNNGTG | 1 cut(s) | 1469 |
| PagI | TCATGA | 1 cut(s) | 1150 |
| PasI | CCCWGGG | 1 cut(s) | 356 |
| PceI | AGGCCT | 2 cut(s) | 194, 1307 |
| PcsI | WCGNNNNNNNCGW | 3 cut(s) | 495, 597, 971 |
| PctI | GAATGC | 2 cut(s) | 474, 1010 |
| PfeI | GAWTC | 4 cut(s) | 311, 968, 1357, 1889 |
| PflFI | GACNNNGTC | 1 cut(s) | 491 |
| PinAI | ACCGGT | 1 cut(s) | 410 |
| Ple19I | CGATCG | 1 cut(s) | 1329 |
| PleI | GAGTC | 8 cut(s) | 227, 560, 568, 719, 788, 817, 1021, 1582 |
| PpsI | GAGTC | 8 cut(s) | 227, 560, 568, 719, 788, 817, 1021, 1582 |
| Ppu21I | YACGTR | 2 cut(s) | 1336, 1376 |
| PpuMI | RGGWCCY | 2 cut(s) | 875, 1185 |
| PshAI | GACNNNNGTC | 1 cut(s) | 1757 |
| Psp124BI | GAGCTC | 3 cut(s) | 660, 1203, 1683 |
| Psp5II | RGGWCCY | 2 cut(s) | 875, 1185 |
| Psp6I | CCWGG | 3 cut(s) | 355, 370, 879 |
| PspFI | CCCAGC | 1 cut(s) | 769 |
| PspGI | CCWGG | 3 cut(s) | 355, 370, 879 |
| PspPI | GGNCC | 8 cut(s) | 583, 611, 634, 875, 1185, 1479, 1490, 1803 |
| PspPPI | RGGWCCY | 2 cut(s) | 875, 1185 |
| PsuI | RGATCY | 2 cut(s) | 108, 1363 |
| PsyI | GACNNNGTC | 1 cut(s) | 491 |
| PvuI | CGATCG | 1 cut(s) | 1329 |
| RruI | TCGCGA | 1 cut(s) | 1239 |
| RsaI | GTAC | 4 cut(s) | 131, 834, 1334, 1636 |
| RsaNI | GTAC | 4 cut(s) | 130, 833, 1333, 1635 |
| RseI | CAYNNNNRTG | 2 cut(s) | 1049, 1469 |
| SacI | GAGCTC | 3 cut(s) | 660, 1203, 1683 |
| SaqAI | TTAA | 5 cut(s) | 305, 765, 1083, 1248, 1517 |
| Sau3AI | GATC | 8 cut(s) | 108, 535, 775, 982, 1326, 1363, 1396, 1409 |
| Sau96I | GGNCC | 8 cut(s) | 583, 611, 634, 875, 1185, 1479, 1490, 1803 |
| SchI | GAGTC | 8 cut(s) | 227, 560, 569, 719, 788, 818, 1021, 1583 |
| SduI | GDGCHC | 7 cut(s) | 660, 858, 1067, 1203, 1284, 1464, 1683 |
| SfaNI | GCATC | 1 cut(s) | 1150 |
| SgrAI | CRCCGGYG | 2 cut(s) | 410, 819 |
| SinI | GGWCC | 5 cut(s) | 611, 875, 1185, 1479, 1490 |
| SmaI | CCCGGG | 2 cut(s) | 1484, 1498 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 1049, 1469 |
| SmlI | CTYRAG | 1 cut(s) | 1367 |
| SmoI | CTYRAG | 1 cut(s) | 1367 |
| Sse9I | AATT | 5 cut(s) | 718, 1056, 1343, 1743, 1875 |
| SseBI | AGGCCT | 2 cut(s) | 194, 1307 |
| SspMI | CTAG | 9 cut(s) | 485, 503, 668, 743, 759, 957, 1277, 1643, 1894 |
| SstI | GAGCTC | 3 cut(s) | 660, 1203, 1683 |
| StuI | AGGCCT | 2 cut(s) | 194, 1307 |
| StyI | CCWWGG | 3 cut(s) | 171, 871, 1806 |
| TaaI | ACNGT | 9 cut(s) | 77, 163, 228, 466, 593, 928, 1404, 1468, 1756 |
| TaiI | ACGT | 4 cut(s) | 1070, 1338, 1378, 1383 |
| TaqI | TCGA | 7 cut(s) | 426, 498, 802, 1310, 1329, 1652, 1659 |
| TasI | AATT | 5 cut(s) | 718, 1056, 1343, 1743, 1875 |
| TauI | GCSGC | 3 cut(s) | 276, 588, 1547 |
| TfiI | GAWTC | 4 cut(s) | 311, 968, 1357, 1889 |
| Tru1I | TTAA | 5 cut(s) | 305, 765, 1083, 1248, 1517 |
| Tru9I | TTAA | 5 cut(s) | 305, 765, 1083, 1248, 1517 |
| TscAI | CASTG | 2 cut(s) | 187, 753 |
| TseFI | GTSAC | 4 cut(s) | 1288, 1575, 1627, 1664 |
| TseI | GCWGC | 8 cut(s) | 5, 21, 33, 214, 394, 641, 664, 849 |
| Tsp45I | GTSAC | 4 cut(s) | 1288, 1575, 1627, 1664 |
| TspDTI | ATGAA | 3 cut(s) | 1003, 1249, 1457 |
| TspGWI | ACGGA | 4 cut(s) | 820, 980, 1095, 1862 |
| TspMI | CCCGGG | 2 cut(s) | 1482, 1496 |
| TspRI | CASTG | 2 cut(s) | 187, 753 |
| Tth111I | GACNNNGTC | 1 cut(s) | 491 |
| VpaK11BI | GGWCC | 5 cut(s) | 611, 875, 1185, 1479, 1490 |
| XbaI | TCTAGA | 1 cut(s) | 1642 |
| XceI | RCATGY | 3 cut(s) | 40, 401, 1048 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1216 |
| XmaI | CCCGGG | 2 cut(s) | 1482, 1496 |
| XspI | CTAG | 9 cut(s) | 485, 503, 668, 743, 759, 957, 1277, 1643, 1894 |