Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0014665

Physical Location & Seq

Genomic Coordinates Forward (+)

21353228 .. 21355724

Gene Structure 2497 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G246100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1080 bp

ATGGCTCTGAAAGTTATTGCCCTTCAATTACTAGCATCATTGGCTGCATTCTTGCCTACAACTATCCCCGCCAATCTCACTTATCCGGCAGTGTTTAACTTCGGCGATTCGAATTCAGACACCGGAGGCCTCAATGCAGGAATTGCTTTTCCTATTAAACGTTTCTGCAATGGCTATTTGATCATTGATTACCTAATGAATGAAATGGACCTACCATTTCTGAATCCATACTTGGATTCTGTTGGTGCACCAAGCTTCCAAACAGGATGCAATTTTGCAACTGGAGGGTCTACTGTTCTTCCAGCCAATGCAGCCTTAATAAGCCCCTTCTCCTTTGGAATTCAGGTTGCTCAATTTGGCAGATTCAAGGCAAAAGCTCTTGAGTTACTATCTAAAGACAAGAAGCTTCAAAATGTCCTCCCTTTCGAAGATTATTTCAAGCAGGGCCTTTACACATTCGATGTGGGACAGAATGATCTTGATGGTGCATTTTCTTTAAAATCAGAAGACCAAGTAGTTGCTTTAATCCCATCTATTATGACAGAATTCGAGACCGGAATTCAGAAACTATACAATCAGGGGGCTAGGAATTTTTGGATTCACAACACAGGTCCACTGGGATGCCTACCAAGAATTATTGCAACATTTGGGAAAAACCCATCACAGCTTGACCAATTTGGATGCGTTGCTTCCCACAACCGTGCTGCTACTGCTTTCAATGCACAACTACGTGATCTTTGTTTCAAGTTTCAGAGAAAATTCCCAGAAGCCAATGTTACTTACATCAACATCTACAAAATAAAGTTGGACCTCATCACAAACTATGCTCAATATGGATTCAAACAAGGCATAGCAGCATGCTGTGGATACGGTGGTCTGCCATTAAATTTTGATAATCGGATTAATTGTGGAGAAACCAAGAATCTCAATGGGACTTTGGTCACTGCAACACCATGCACTAATCCAGAAGAGTATGTGAATTGGGACGGCAGCCATTATACTCGAGCTGCAAATCAATATGTGTCAACCCAGATATTGACTGGAAATTTCTCAGAGACACTTGACATCTTCCAATATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_GDSL

Protein Analysis

360

Amino Acids

39.52

Weight (kDa)

5.95

Isoelectric Point (pI)

24.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014665)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g24060 FvH4_2g24060
prunus_persica	Prupe.8G246100_v2.0.a1 Prupe.8G246400_v2.0.a1 Prupe.8G246400_v2.0.a1 Prupe.8G246700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0291841
rosa_laevigata	RLG00000012084
rosa_multiflora	Rmu_sc0001043.1_g000016
rosa_roxburghii	Rroxscaffold_7G00175710
rosa_rugosa	Rorug06G0221700
rosa_samantha	Rh6AG334600 Rh6BG342000 Rh6CG347900 Rh6DG334900
rosa_wichuraiana	Rw6G028940 Rw6G029120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	290
AciI	CCGC	1 cut(s)	69
AclI	AACGTT	1 cut(s)	160
AcsI	RAATTY	8 cut(s)	112, 339, 545, 558, 589, 758, 886, 1045
AgsI	TTSAA	7 cut(s)	26, 367, 410, 439, 718, 745, 841
AjuI	GAANNNNNNNTTGG	2 cut(s)	215, 247
AleI	CACNNNNGTG	1 cut(s)	699
AluBI	AGCT	5 cut(s)	255, 377, 406, 667, 1007
AluI	AGCT	5 cut(s)	255, 377, 406, 667, 1007
Alw21I	GWGCWC	1 cut(s)	250
Alw26I	GTCTC	2 cut(s)	545, 1049
Alw44I	GTGCAC	1 cut(s)	246
Ama87I	CYCGRG	1 cut(s)	1002
AoxI	GGCC	2 cut(s)	127, 445
ApaLI	GTGCAC	1 cut(s)	246
ApeKI	GCWGC	6 cut(s)	44, 311, 704, 854, 990, 1007
ApoI	RAATTY	8 cut(s)	112, 339, 545, 558, 589, 758, 886, 1045
AseI	ATTAAT	1 cut(s)	903
AspS9I	GGNCC	4 cut(s)	208, 445, 611, 808
AsuII	TTCGAA	2 cut(s)	110, 426
AvaI	CYCGRG	1 cut(s)	1002
AvaII	GGWCC	3 cut(s)	208, 611, 808
BaeGI	GKGCMC	1 cut(s)	250
BaeI	ACNNNNGTAYC	2 cut(s)	859, 892
BbsI	GAAGAC	1 cut(s)	513
Bbv12I	GWGCWC	1 cut(s)	250
BbvI	GCAGC	6 cut(s)	31, 323, 691, 866, 994, 1002
BccI	CCATC	3 cut(s)	476, 538, 667
BceAI	ACGGC	1 cut(s)	1003
BciVI	GTATCC	1 cut(s)	860
BclI	TGATCA	1 cut(s)	180
BcoDI	GTCTC	2 cut(s)	545, 1049
BfaI	CTAG	2 cut(s)	32, 585
BfuI	GTATCC	1 cut(s)	860
BisI	GCNGC	6 cut(s)	45, 312, 705, 855, 991, 1008
BlsI	GCNGC	6 cut(s)	46, 313, 706, 856, 992, 1009
Bme18I	GGWCC	3 cut(s)	208, 611, 808
BmeT110I	CYCGRG	1 cut(s)	1002
BmgT120I	GGNCC	4 cut(s)	208, 445, 611, 808
BmrI	ACTGGG	1 cut(s)	626
BmsI	GCATC	4 cut(s)	44, 257, 611, 671
BmuI	ACTGGG	1 cut(s)	626
BoxI	GACNNNNGTC	1 cut(s)	938
BpiI	GAAGAC	1 cut(s)	513
BpmI	CTGGAG	1 cut(s)	303
Bpu14I	TTCGAA	2 cut(s)	110, 426
BpuEI	CTTGAG	1 cut(s)	401
BsaAI	YACGTR	1 cut(s)	731
BsaI	GGTCTC	1 cut(s)	545
BsaWI	WCCGGW	2 cut(s)	122, 554
Bse1I	ACTGG	3 cut(s)	286, 621, 1045
Bse3DI	GCAATG	1 cut(s)	175
BseGI	GGATG	3 cut(s)	272, 626, 686
BseMI	GCAATG	1 cut(s)	175
BseMII	CTCAG	1 cut(s)	1065
BseNI	ACTGG	3 cut(s)	286, 621, 1045
BseSI	GKGCMC	1 cut(s)	250
BseXI	GCAGC	6 cut(s)	31, 323, 691, 866, 994, 1002
BshFI	GGCC	2 cut(s)	129, 447
BsiHKAI	GWGCWC	1 cut(s)	250
BsiHKCI	CYCGRG	1 cut(s)	1002
BsiSI	CCGG	3 cut(s)	86, 123, 555
BslFI	GGGAC	3 cut(s)	480, 946, 998
BsmAI	GTCTC	2 cut(s)	545, 1049
BsmFI	GGGAC	3 cut(s)	480, 946, 998
BsmI	GAATGC	1 cut(s)	47
BsnI	GGCC	2 cut(s)	129, 447
Bso31I	GGTCTC	1 cut(s)	545
BsoBI	CYCGRG	1 cut(s)	1002
Bsp119I	TTCGAA	2 cut(s)	110, 426
Bsp1286I	GDGCHC	1 cut(s)	250
Bsp143I	GATC	3 cut(s)	180, 475, 733
BspACI	CCGC	1 cut(s)	69
BspANI	GGCC	2 cut(s)	129, 447
BspCNI	CTCAG	1 cut(s)	1064
BspT104I	TTCGAA	2 cut(s)	110, 426
BspTNI	GGTCTC	1 cut(s)	545
BsrDI	GCAATG	1 cut(s)	175
BsrI	ACTGG	3 cut(s)	286, 621, 1045
BssMI	GATC	3 cut(s)	180, 475, 733
Bst4CI	ACNGT	3 cut(s)	295, 701, 872
Bst6I	CTCTTC	1 cut(s)	963
BstAPI	GCANNNNNTGC	1 cut(s)	143
BstBAI	YACGTR	1 cut(s)	731
BstBI	TTCGAA	2 cut(s)	110, 426
BstC8I	GCNNGC	1 cut(s)	859
BstDEI	CTNAG	1 cut(s)	1051
BstF5I	GGATG	3 cut(s)	272, 626, 686
BstKTI	GATC	3 cut(s)	183, 478, 736
BstMAI	GTCTC	2 cut(s)	545, 1049
BstMBI	GATC	3 cut(s)	180, 475, 733
BstMWI	GCNNNNNNNGC	5 cut(s)	41, 143, 311, 710, 719
BstNSI	RCATGY	1 cut(s)	861
BstPAI	GACNNNNGTC	1 cut(s)	938
BstSLI	GKGCMC	1 cut(s)	250
BstV1I	GCAGC	6 cut(s)	31, 323, 691, 866, 994, 1002
BstV2I	GAAGAC	1 cut(s)	513
BsuI	GTATCC	1 cut(s)	860
BsuRI	GGCC	2 cut(s)	129, 447
BtsCI	GGATG	3 cut(s)	272, 626, 686
BtsI	GCAGTG	2 cut(s)	96, 942
BtsIMutI	CAGTG	3 cut(s)	96, 614, 942
Cac8I	GCNNGC	1 cut(s)	859
Cfr13I	GGNCC	4 cut(s)	208, 445, 611, 808
CviAII	CATG	2 cut(s)	858, 954
DdeI	CTNAG	1 cut(s)	1051
DpnI	GATC	3 cut(s)	182, 477, 735
DpnII	GATC	3 cut(s)	180, 475, 733
DraI	TTTAAA	1 cut(s)	498
Eam1104I	CTCTTC	1 cut(s)	963
EarI	CTCTTC	1 cut(s)	963
Eco147I	AGGCCT	1 cut(s)	129
Eco31I	GGTCTC	1 cut(s)	545
Eco47I	GGWCC	3 cut(s)	208, 611, 808
Eco88I	CYCGRG	1 cut(s)	1002
EcoO109I	RGGNCCY	1 cut(s)	445
EcoRI	GAATTC	4 cut(s)	112, 339, 545, 558
FaeI	CATG	2 cut(s)	861, 957
FaqI	GGGAC	3 cut(s)	480, 946, 998
FatI	CATG	2 cut(s)	857, 953
FauI	CCCGC	1 cut(s)	76
FbaI	TGATCA	1 cut(s)	180
FblI	GTMKAC	1 cut(s)	290
Fnu4HI	GCNGC	6 cut(s)	45, 312, 705, 855, 991, 1008
FokI	GGATG	3 cut(s)	279, 633, 693
Fsp4HI	GCNGC	6 cut(s)	45, 312, 705, 855, 991, 1008
FspBI	CTAG	2 cut(s)	32, 585
GluI	GCNGC	6 cut(s)	45, 312, 705, 855, 991, 1008
GsuI	CTGGAG	1 cut(s)	303
HaeIII	GGCC	2 cut(s)	129, 447
HapII	CCGG	3 cut(s)	86, 123, 555
Hin1II	CATG	2 cut(s)	861, 957
HincII	GTYRAC	1 cut(s)	1026
HindII	GTYRAC	1 cut(s)	1026
HindIII	AAGCTT	2 cut(s)	253, 404
HinfI	GANTC	7 cut(s)	107, 223, 236, 363, 598, 837, 922
HpaII	CCGG	3 cut(s)	86, 123, 555
Hpy166II	GTNNAC	4 cut(s)	248, 291, 614, 1026
Hpy188I	TCNGA	8 cut(s)	9, 118, 222, 505, 564, 753, 900, 1054
Hpy188III	TCNNGA	4 cut(s)	380, 479, 550, 965
Hpy8I	GTNNAC	4 cut(s)	248, 291, 614, 1026
HpyAV	CCTTC	2 cut(s)	32, 337
HpyCH4III	ACNGT	3 cut(s)	295, 701, 872
HpyCH4IV	ACGT	2 cut(s)	160, 730
HpyF10VI	GCNNNNNNNGC	5 cut(s)	41, 143, 311, 710, 719
HpyF3I	CTNAG	1 cut(s)	1051
HpySE526I	ACGT	2 cut(s)	160, 730
Hsp92II	CATG	2 cut(s)	861, 957
Ksp22I	TGATCA	1 cut(s)	180
Kzo9I	GATC	3 cut(s)	180, 475, 733
Lsp1109I	GCAGC	6 cut(s)	31, 323, 691, 866, 994, 1002
LweI	GCATC	4 cut(s)	44, 257, 611, 671
MaeI	CTAG	2 cut(s)	32, 585
MaeII	ACGT	2 cut(s)	160, 730
MaeIII	GTNAC	3 cut(s)	384, 775, 940
MalI	GATC	3 cut(s)	182, 477, 735
MboI	GATC	3 cut(s)	180, 475, 733
MboII	GAAGA	5 cut(s)	290, 440, 518, 980, 1060
MhlI	GDGCHC	1 cut(s)	250
MmeI	TCCRAC	1 cut(s)	786
MnlI	CCTC	5 cut(s)	119, 140, 278, 428, 821
MseI	TTAA	7 cut(s)	96, 156, 317, 497, 524, 884, 903
MslI	CAYNNNNRTG	2 cut(s)	619, 699
MspI	CCGG	3 cut(s)	86, 123, 555
Mva1269I	GAATGC	1 cut(s)	47
MwoI	GCNNNNNNNGC	5 cut(s)	41, 143, 311, 710, 719
NdeII	GATC	3 cut(s)	180, 475, 733
NlaIII	CATG	2 cut(s)	861, 957
NmuCI	GTSAC	1 cut(s)	940
NspI	RCATGY	1 cut(s)	861
NspV	TTCGAA	2 cut(s)	110, 426
OliI	CACNNNNGTG	1 cut(s)	699
PaeI	GCATGC	1 cut(s)	861
PaeR7I	CTCGAG	1 cut(s)	1002
PceI	AGGCCT	1 cut(s)	129
PctI	GAATGC	1 cut(s)	47
PfeI	GAWTC	7 cut(s)	107, 223, 236, 363, 598, 837, 922
PkrI	GCNGC	6 cut(s)	46, 313, 706, 856, 992, 1009
Ppu21I	YACGTR	1 cut(s)	731
PshAI	GACNNNNGTC	1 cut(s)	938
PshBI	ATTAAT	1 cut(s)	903
Psp1406I	AACGTT	1 cut(s)	160
PspPI	GGNCC	4 cut(s)	208, 445, 611, 808
PspXI	VCTCGAGB	1 cut(s)	1002
RseI	CAYNNNNRTG	2 cut(s)	619, 699
SaqAI	TTAA	7 cut(s)	96, 156, 317, 497, 524, 884, 903
SatI	GCNGC	6 cut(s)	45, 312, 705, 855, 991, 1008
Sau3AI	GATC	3 cut(s)	180, 475, 733
Sau96I	GGNCC	4 cut(s)	208, 445, 611, 808
SduI	GDGCHC	1 cut(s)	250
SfaNI	GCATC	4 cut(s)	44, 257, 611, 671
Sfr274I	CTCGAG	1 cut(s)	1002
SfuI	TTCGAA	2 cut(s)	110, 426
SinI	GGWCC	3 cut(s)	208, 611, 808
SlaI	CTCGAG	1 cut(s)	1002
SmiMI	CAYNNNNRTG	2 cut(s)	619, 699
SmlI	CTYRAG	2 cut(s)	380, 1002
SmoI	CTYRAG	2 cut(s)	380, 1002
SphI	GCATGC	1 cut(s)	861
SseBI	AGGCCT	1 cut(s)	129
SsiI	CCGC	1 cut(s)	69
SspI	AATATT	1 cut(s)	1076
SspMI	CTAG	2 cut(s)	32, 585
StuI	AGGCCT	1 cut(s)	129
TaaI	ACNGT	3 cut(s)	295, 701, 872
TaiI	ACGT	2 cut(s)	163, 733
TaqI	TCGA	5 cut(s)	110, 426, 459, 549, 1003
TfiI	GAWTC	7 cut(s)	107, 223, 236, 363, 598, 837, 922
Tru1I	TTAA	7 cut(s)	96, 156, 317, 497, 524, 884, 903
Tru9I	TTAA	7 cut(s)	96, 156, 317, 497, 524, 884, 903
TscAI	CASTG	3 cut(s)	96, 621, 949
TseFI	GTSAC	1 cut(s)	940
TseI	GCWGC	6 cut(s)	44, 311, 704, 854, 990, 1007
Tsp45I	GTSAC	1 cut(s)	940
TspDTI	ATGAA	2 cut(s)	212, 216
TspRI	CASTG	3 cut(s)	96, 621, 949
VneI	GTGCAC	1 cut(s)	246
VpaK11BI	GGWCC	3 cut(s)	208, 611, 808
VspI	ATTAAT	1 cut(s)	903
XapI	RAATTY	8 cut(s)	112, 339, 545, 558, 589, 758, 886, 1045
XceI	RCATGY	1 cut(s)	861
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1037
XhoI	CTCGAG	1 cut(s)	1002
XmiI	GTMKAC	1 cut(s)	290
XspI	CTAG	2 cut(s)	32, 585

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.