Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0014665

Physical Location & Seq

Genomic Coordinates Forward (+)

21380025 .. 21380946

Gene Structure 922 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G246700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGGCTCTGAAAGTTATTGCCCTTCAATTAATAGCATCATTGGCTGCATTCTTGCCTACAACTATCCCCGCCAATCTCAGTTATCCGGCATTGTTTAACTTCGGCGATTCGAATTCAGACACCGGAGGCCTCAATGCAGGAATTGCTTTTCCTATTAAACGTTTCTGCAATGGCTATTTGATCATTGATTACCTAATGAATGAAATGGACCTACCATTTCTGAATCCATACTTGGATTCTGTTGGTGCACCAAGCTTCCAAACAGGATGCAATTTTGCAACTGCAGGGTCTACTGTTCTTTCAGCCAATGCAGCCTCAATAAGCCCCTTCTCCATTGGAATTCAGGTTGCTCAATTTGGCAGATTCAAGGCAAAAGCTCTTGAGTTACTATCTAAAGACAAGAAGCTTCAAAATGTCCTCCCTTTCGAAGATTATTTCAAGCAGGGCCTTTACACATTCGATGTAAACGAGCCAAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_GDSL

Protein Analysis

160

Amino Acids

17.16

Weight (kDa)

4.92

Isoelectric Point (pI)

29.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014665)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g24060 FvH4_2g24060
prunus_persica	Prupe.8G246100_v2.0.a1 Prupe.8G246400_v2.0.a1 Prupe.8G246400_v2.0.a1 Prupe.8G246700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0291841
rosa_laevigata	RLG00000012084
rosa_multiflora	Rmu_sc0001043.1_g000016
rosa_roxburghii	Rroxscaffold_7G00175710
rosa_rugosa	Rorug06G0221700
rosa_samantha	Rh6AG334600 Rh6BG342000 Rh6CG347900 Rh6DG334900
rosa_wichuraiana	Rw6G028940 Rw6G029120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	290
AciI	CCGC	1 cut(s)	69
AclI	AACGTT	1 cut(s)	160
AcsI	RAATTY	2 cut(s)	112, 339
AgsI	TTSAA	4 cut(s)	26, 367, 410, 439
AjuI	GAANNNNNNNTTGG	2 cut(s)	215, 247
AluBI	AGCT	4 cut(s)	255, 377, 406, 477
AluI	AGCT	4 cut(s)	255, 377, 406, 477
Alw21I	GWGCWC	1 cut(s)	250
Alw44I	GTGCAC	1 cut(s)	246
AoxI	GGCC	2 cut(s)	127, 445
ApaLI	GTGCAC	1 cut(s)	246
ApeKI	GCWGC	2 cut(s)	44, 311
ApoI	RAATTY	2 cut(s)	112, 339
AseI	ATTAAT	1 cut(s)	29
AspS9I	GGNCC	2 cut(s)	208, 445
AsuII	TTCGAA	2 cut(s)	110, 426
AvaII	GGWCC	1 cut(s)	208
BaeGI	GKGCMC	1 cut(s)	250
Bbv12I	GWGCWC	1 cut(s)	250
BbvI	GCAGC	2 cut(s)	31, 323
BclI	TGATCA	1 cut(s)	180
BfmI	CTRYAG	1 cut(s)	282
BisI	GCNGC	2 cut(s)	45, 312
BlsI	GCNGC	2 cut(s)	46, 313
Bme18I	GGWCC	1 cut(s)	208
BmgT120I	GGNCC	2 cut(s)	208, 445
BmsI	GCATC	2 cut(s)	44, 257
Bpu14I	TTCGAA	2 cut(s)	110, 426
BpuEI	CTTGAG	1 cut(s)	401
BsaWI	WCCGGW	1 cut(s)	122
Bse3DI	GCAATG	1 cut(s)	175
BseGI	GGATG	1 cut(s)	272
BseMI	GCAATG	1 cut(s)	175
BseMII	CTCAG	1 cut(s)	91
BseSI	GKGCMC	1 cut(s)	250
BseXI	GCAGC	2 cut(s)	31, 323
BshFI	GGCC	2 cut(s)	129, 447
BsiHKAI	GWGCWC	1 cut(s)	250
BsiSI	CCGG	2 cut(s)	86, 123
BsmI	GAATGC	1 cut(s)	47
BsnI	GGCC	2 cut(s)	129, 447
Bsp119I	TTCGAA	2 cut(s)	110, 426
Bsp1286I	GDGCHC	1 cut(s)	250
Bsp143I	GATC	1 cut(s)	180
BspACI	CCGC	1 cut(s)	69
BspANI	GGCC	2 cut(s)	129, 447
BspCNI	CTCAG	1 cut(s)	90
BspMAI	CTGCAG	1 cut(s)	286
BspT104I	TTCGAA	2 cut(s)	110, 426
BsrDI	GCAATG	1 cut(s)	175
BssMI	GATC	1 cut(s)	180
Bst4CI	ACNGT	1 cut(s)	295
BstAPI	GCANNNNNTGC	1 cut(s)	143
BstBI	TTCGAA	2 cut(s)	110, 426
BstDEI	CTNAG	1 cut(s)	77
BstF5I	GGATG	1 cut(s)	272
BstKTI	GATC	1 cut(s)	183
BstMBI	GATC	1 cut(s)	180
BstMWI	GCNNNNNNNGC	3 cut(s)	41, 143, 311
BstSFI	CTRYAG	1 cut(s)	282
BstSLI	GKGCMC	1 cut(s)	250
BstV1I	GCAGC	2 cut(s)	31, 323
BsuRI	GGCC	2 cut(s)	129, 447
BtsCI	GGATG	1 cut(s)	272
Cfr13I	GGNCC	2 cut(s)	208, 445
DdeI	CTNAG	1 cut(s)	77
DpnI	GATC	1 cut(s)	182
DpnII	GATC	1 cut(s)	180
Eco147I	AGGCCT	1 cut(s)	129
Eco47I	GGWCC	1 cut(s)	208
EcoO109I	RGGNCCY	1 cut(s)	445
EcoRI	GAATTC	2 cut(s)	112, 339
FaiI	YATR	1 cut(s)	229
FauI	CCCGC	1 cut(s)	76
FbaI	TGATCA	1 cut(s)	180
FblI	GTMKAC	1 cut(s)	290
Fnu4HI	GCNGC	2 cut(s)	45, 312
FokI	GGATG	1 cut(s)	279
Fsp4HI	GCNGC	2 cut(s)	45, 312
GluI	GCNGC	2 cut(s)	45, 312
HaeIII	GGCC	2 cut(s)	129, 447
HapII	CCGG	2 cut(s)	86, 123
HindIII	AAGCTT	2 cut(s)	253, 404
HinfI	GANTC	4 cut(s)	107, 223, 236, 363
HpaII	CCGG	2 cut(s)	86, 123
Hpy166II	GTNNAC	3 cut(s)	248, 291, 466
Hpy188I	TCNGA	3 cut(s)	9, 118, 222
Hpy188III	TCNNGA	1 cut(s)	380
Hpy8I	GTNNAC	3 cut(s)	248, 291, 466
HpyAV	CCTTC	2 cut(s)	32, 337
HpyCH4III	ACNGT	1 cut(s)	295
HpyCH4IV	ACGT	1 cut(s)	160
HpyCH4V	TGCA	8 cut(s)	47, 137, 168, 248, 270, 278, 284, 311
HpyF10VI	GCNNNNNNNGC	3 cut(s)	41, 143, 311
HpyF3I	CTNAG	1 cut(s)	77
HpySE526I	ACGT	1 cut(s)	160
Ksp22I	TGATCA	1 cut(s)	180
Kzo9I	GATC	1 cut(s)	180
LpnPI	CCDG	7 cut(s)	99, 123, 136, 249, 270, 329, 428
Lsp1109I	GCAGC	2 cut(s)	31, 323
LweI	GCATC	2 cut(s)	44, 257
MaeII	ACGT	1 cut(s)	160
MaeIII	GTNAC	1 cut(s)	384
MalI	GATC	1 cut(s)	182
MboI	GATC	1 cut(s)	180
MboII	GAAGA	1 cut(s)	440
MhlI	GDGCHC	1 cut(s)	250
MluCI	AATT	6 cut(s)	26, 112, 141, 271, 339, 353
MnlI	CCTC	4 cut(s)	119, 140, 325, 428
MseI	TTAA	3 cut(s)	29, 96, 156
MspI	CCGG	2 cut(s)	86, 123
Mva1269I	GAATGC	1 cut(s)	47
MwoI	GCNNNNNNNGC	3 cut(s)	41, 143, 311
NdeII	GATC	1 cut(s)	180
NspV	TTCGAA	2 cut(s)	110, 426
PceI	AGGCCT	1 cut(s)	129
PcsI	WCGNNNNNNNCGW	1 cut(s)	465
PctI	GAATGC	1 cut(s)	47
PfeI	GAWTC	4 cut(s)	107, 223, 236, 363
PkrI	GCNGC	2 cut(s)	46, 313
PshBI	ATTAAT	1 cut(s)	29
Psp1406I	AACGTT	1 cut(s)	160
PspPI	GGNCC	2 cut(s)	208, 445
PstI	CTGCAG	1 cut(s)	286
SaqAI	TTAA	3 cut(s)	29, 96, 156
SatI	GCNGC	2 cut(s)	45, 312
Sau3AI	GATC	1 cut(s)	180
Sau96I	GGNCC	2 cut(s)	208, 445
SduI	GDGCHC	1 cut(s)	250
SetI	ASST	8 cut(s)	163, 195, 213, 257, 348, 379, 408, 479
SfaNI	GCATC	2 cut(s)	44, 257
SfcI	CTRYAG	1 cut(s)	282
SfuI	TTCGAA	2 cut(s)	110, 426
SinI	GGWCC	1 cut(s)	208
SmlI	CTYRAG	1 cut(s)	380
SmoI	CTYRAG	1 cut(s)	380
Sse9I	AATT	6 cut(s)	26, 112, 141, 271, 339, 353
SseBI	AGGCCT	1 cut(s)	129
SsiI	CCGC	1 cut(s)	69
StuI	AGGCCT	1 cut(s)	129
TaaI	ACNGT	1 cut(s)	295
TaiI	ACGT	1 cut(s)	163
TaqI	TCGA	3 cut(s)	110, 426, 459
TasI	AATT	6 cut(s)	26, 112, 141, 271, 339, 353
TfiI	GAWTC	4 cut(s)	107, 223, 236, 363
Tru1I	TTAA	3 cut(s)	29, 96, 156
Tru9I	TTAA	3 cut(s)	29, 96, 156
TseI	GCWGC	2 cut(s)	44, 311
TspDTI	ATGAA	2 cut(s)	212, 216
VneI	GTGCAC	1 cut(s)	246
VpaK11BI	GGWCC	1 cut(s)	208
VspI	ATTAAT	1 cut(s)	29
XapI	RAATTY	2 cut(s)	112, 339
XmiI	GTMKAC	1 cut(s)	290

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.