Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0014665

Physical Location & Seq

Genomic Coordinates Forward (+)

21362904 .. 21365407

Gene Structure 2504 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G246400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1080 bp

ATGGCTCTGAAAGTTATTGCCCTTCAATTAATAGCATCATTGGCTGCATTCTTGCCTACAACTATCCCCGCCAATCTCAGTTATCCGGCATTGTTTAACTTCGGCGATTCGAATTCAGACACCGGAGGCCTCAATGCAGGAATTGCTTTTCCTATTAAACGTTTCTGCAATGGCTATTTGATCATTGATTACCTAATGAATGAAATGGACCTACCATTTCTGAATCCATACTTGGATTCTGTTGGTGCACCAAGCTTCCAAACAGGATGCAATTTTGCAACTGGAGGGTCTACTGTTCTTCCAGCCAATGCAGCCTTAATAAGCCCCTTTTTCTTTGGAATTCAGGTTGCTCAATTTGGCAGATTCAAGGCAAAAGCTCTTGAGTTACTATCTAAAGACAAGAAGCTTCAAAATGTCCTCCCTTTCGAAGATTATTTCAAGCAGGGCCTTTACACATTCGATGTGGGACAGAATGATCTTGATGGTGCATTTTCTTTAAAATCAGAAGACCAAGTAGTTGCTTTAATCCCATCTATTATGACAGAATTCGAGACCGGAATTCAGAAACTATACAATCAGGGGGCTAGGAATTTTTGGATTCACAACACAGGTCCACTGGGATGCCTACCAAGAACTATTGCAACATTTGGGAAAAACCCATCACAGCTTGACCAATTTGGATGCGTTGCTTCCCACAACCGTGCTGCTACTGCTTTCAATGCACAACTACGTGATCTTTGTTTCGAGTTTCAGAGAAAATTCCCAGAAGCCAATGTTACTTACATCAACATCTACAAAATAAAGTTGGACCTCATCACAAACTATGCTCAATATGGATTCAAACAAGGCATAGCAGCTTGCTGTGGATATGGTGGTCTGCCATTAAATTTTGATAATCGGATTAATTGTGGAGAAACCAAGAATCTCAATGGGACTTTGGTCACTGCAACACCATGCACTAATCCAGAAGAGTATGTGAATTGGGACGGCATCCATTATACCCGATCTGCAAATCAGTATGTGTCAACCCAGATATTGACTGGAAATTTCTCAGAGACACTTGACCTCTTCCAATATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_GDSL

Protein Analysis

360

Amino Acids

39.61

Weight (kDa)

5.46

Isoelectric Point (pI)

26.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014665)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g24060 FvH4_2g24060
prunus_persica	Prupe.8G246100_v2.0.a1 Prupe.8G246400_v2.0.a1 Prupe.8G246400_v2.0.a1 Prupe.8G246700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0291841
rosa_laevigata	RLG00000012084
rosa_multiflora	Rmu_sc0001043.1_g000016
rosa_roxburghii	Rroxscaffold_7G00175710
rosa_rugosa	Rorug06G0221700
rosa_samantha	Rh6AG334600 Rh6BG342000 Rh6CG347900 Rh6DG334900
rosa_wichuraiana	Rw6G028940 Rw6G029120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	290
AciI	CCGC	1 cut(s)	69
AclI	AACGTT	1 cut(s)	160
AcsI	RAATTY	8 cut(s)	112, 339, 545, 558, 589, 758, 886, 1045
AgsI	TTSAA	6 cut(s)	26, 367, 410, 439, 718, 841
AjuI	GAANNNNNNNTTGG	2 cut(s)	215, 247
AleI	CACNNNNGTG	1 cut(s)	699
AluBI	AGCT	5 cut(s)	255, 377, 406, 667, 857
AluI	AGCT	5 cut(s)	255, 377, 406, 667, 857
Alw21I	GWGCWC	1 cut(s)	250
Alw26I	GTCTC	2 cut(s)	545, 1049
Alw44I	GTGCAC	1 cut(s)	246
AoxI	GGCC	2 cut(s)	127, 445
ApaLI	GTGCAC	1 cut(s)	246
ApeKI	GCWGC	4 cut(s)	44, 311, 704, 854
ApoI	RAATTY	8 cut(s)	112, 339, 545, 558, 589, 758, 886, 1045
AseI	ATTAAT	2 cut(s)	29, 903
AspS9I	GGNCC	4 cut(s)	208, 445, 611, 808
AsuII	TTCGAA	2 cut(s)	110, 426
AvaII	GGWCC	3 cut(s)	208, 611, 808
BaeGI	GKGCMC	1 cut(s)	250
BbsI	GAAGAC	1 cut(s)	513
Bbv12I	GWGCWC	1 cut(s)	250
BbvI	GCAGC	4 cut(s)	31, 323, 691, 866
BccI	CCATC	3 cut(s)	476, 538, 667
BceAI	ACGGC	1 cut(s)	1003
BclI	TGATCA	1 cut(s)	180
BcoDI	GTCTC	2 cut(s)	545, 1049
BfaI	CTAG	1 cut(s)	585
BisI	GCNGC	4 cut(s)	45, 312, 705, 855
BlsI	GCNGC	4 cut(s)	46, 313, 706, 856
Bme18I	GGWCC	3 cut(s)	208, 611, 808
BmgT120I	GGNCC	4 cut(s)	208, 445, 611, 808
BmrI	ACTGGG	1 cut(s)	626
BmsI	GCATC	5 cut(s)	44, 257, 611, 671, 999
BmuI	ACTGGG	1 cut(s)	626
BoxI	GACNNNNGTC	1 cut(s)	938
BpiI	GAAGAC	1 cut(s)	513
BpmI	CTGGAG	1 cut(s)	303
Bpu14I	TTCGAA	2 cut(s)	110, 426
BpuEI	CTTGAG	1 cut(s)	401
BsaAI	YACGTR	1 cut(s)	731
BsaI	GGTCTC	1 cut(s)	545
BsaWI	WCCGGW	2 cut(s)	122, 554
Bse1I	ACTGG	3 cut(s)	286, 621, 1045
Bse3DI	GCAATG	1 cut(s)	175
BseGI	GGATG	4 cut(s)	272, 626, 686, 990
BseMI	GCAATG	1 cut(s)	175
BseMII	CTCAG	2 cut(s)	91, 1065
BseNI	ACTGG	3 cut(s)	286, 621, 1045
BseSI	GKGCMC	1 cut(s)	250
BseXI	GCAGC	4 cut(s)	31, 323, 691, 866
BshFI	GGCC	2 cut(s)	129, 447
BsiHKAI	GWGCWC	1 cut(s)	250
BsiSI	CCGG	3 cut(s)	86, 123, 555
BslFI	GGGAC	3 cut(s)	480, 946, 998
BsmAI	GTCTC	2 cut(s)	545, 1049
BsmFI	GGGAC	3 cut(s)	480, 946, 998
BsmI	GAATGC	1 cut(s)	47
BsnI	GGCC	2 cut(s)	129, 447
Bso31I	GGTCTC	1 cut(s)	545
Bsp119I	TTCGAA	2 cut(s)	110, 426
Bsp1286I	GDGCHC	1 cut(s)	250
Bsp143I	GATC	4 cut(s)	180, 475, 733, 1004
BspACI	CCGC	1 cut(s)	69
BspANI	GGCC	2 cut(s)	129, 447
BspCNI	CTCAG	2 cut(s)	90, 1064
BspT104I	TTCGAA	2 cut(s)	110, 426
BspTNI	GGTCTC	1 cut(s)	545
BsrDI	GCAATG	1 cut(s)	175
BsrI	ACTGG	3 cut(s)	286, 621, 1045
BssMI	GATC	4 cut(s)	180, 475, 733, 1004
Bst4CI	ACNGT	2 cut(s)	295, 701
Bst6I	CTCTTC	2 cut(s)	963, 1073
BstAPI	GCANNNNNTGC	1 cut(s)	143
BstBAI	YACGTR	1 cut(s)	731
BstBI	TTCGAA	2 cut(s)	110, 426
BstC8I	GCNNGC	1 cut(s)	859
BstDEI	CTNAG	2 cut(s)	77, 1051
BstF5I	GGATG	4 cut(s)	272, 626, 686, 990
BstKTI	GATC	4 cut(s)	183, 478, 736, 1007
BstMAI	GTCTC	2 cut(s)	545, 1049
BstMBI	GATC	4 cut(s)	180, 475, 733, 1004
BstMWI	GCNNNNNNNGC	5 cut(s)	41, 143, 311, 710, 719
BstPAI	GACNNNNGTC	1 cut(s)	938
BstSLI	GKGCMC	1 cut(s)	250
BstV1I	GCAGC	4 cut(s)	31, 323, 691, 866
BstV2I	GAAGAC	1 cut(s)	513
BsuRI	GGCC	2 cut(s)	129, 447
BtsCI	GGATG	4 cut(s)	272, 626, 686, 990
BtsI	GCAGTG	1 cut(s)	942
BtsIMutI	CAGTG	2 cut(s)	614, 942
Cac8I	GCNNGC	1 cut(s)	859
Cfr13I	GGNCC	4 cut(s)	208, 445, 611, 808
CviAII	CATG	1 cut(s)	954
DdeI	CTNAG	2 cut(s)	77, 1051
DpnI	GATC	4 cut(s)	182, 477, 735, 1006
DpnII	GATC	4 cut(s)	180, 475, 733, 1004
DraI	TTTAAA	1 cut(s)	498
Eam1104I	CTCTTC	2 cut(s)	963, 1073
EarI	CTCTTC	2 cut(s)	963, 1073
Eco147I	AGGCCT	1 cut(s)	129
Eco31I	GGTCTC	1 cut(s)	545
Eco47I	GGWCC	3 cut(s)	208, 611, 808
EcoO109I	RGGNCCY	1 cut(s)	445
EcoRI	GAATTC	4 cut(s)	112, 339, 545, 558
FaeI	CATG	1 cut(s)	957
FaqI	GGGAC	3 cut(s)	480, 946, 998
FatI	CATG	1 cut(s)	953
FauI	CCCGC	1 cut(s)	76
FbaI	TGATCA	1 cut(s)	180
FblI	GTMKAC	1 cut(s)	290
Fnu4HI	GCNGC	4 cut(s)	45, 312, 705, 855
FokI	GGATG	4 cut(s)	279, 633, 693, 977
Fsp4HI	GCNGC	4 cut(s)	45, 312, 705, 855
FspBI	CTAG	1 cut(s)	585
GluI	GCNGC	4 cut(s)	45, 312, 705, 855
GsuI	CTGGAG	1 cut(s)	303
HaeIII	GGCC	2 cut(s)	129, 447
HapII	CCGG	3 cut(s)	86, 123, 555
Hin1II	CATG	1 cut(s)	957
HincII	GTYRAC	1 cut(s)	1026
HindII	GTYRAC	1 cut(s)	1026
HindIII	AAGCTT	2 cut(s)	253, 404
HinfI	GANTC	7 cut(s)	107, 223, 236, 363, 598, 837, 922
HpaII	CCGG	3 cut(s)	86, 123, 555
Hpy166II	GTNNAC	4 cut(s)	248, 291, 614, 1026
Hpy188I	TCNGA	8 cut(s)	9, 118, 222, 505, 564, 753, 900, 1054
Hpy188III	TCNNGA	4 cut(s)	380, 479, 550, 965
Hpy8I	GTNNAC	4 cut(s)	248, 291, 614, 1026
HpyAV	CCTTC	1 cut(s)	32
HpyCH4III	ACNGT	2 cut(s)	295, 701
HpyCH4IV	ACGT	2 cut(s)	160, 730
HpyF10VI	GCNNNNNNNGC	5 cut(s)	41, 143, 311, 710, 719
HpyF3I	CTNAG	2 cut(s)	77, 1051
HpySE526I	ACGT	2 cut(s)	160, 730
Hsp92II	CATG	1 cut(s)	957
Ksp22I	TGATCA	1 cut(s)	180
Kzo9I	GATC	4 cut(s)	180, 475, 733, 1004
Lsp1109I	GCAGC	4 cut(s)	31, 323, 691, 866
LweI	GCATC	5 cut(s)	44, 257, 611, 671, 999
MaeI	CTAG	1 cut(s)	585
MaeII	ACGT	2 cut(s)	160, 730
MaeIII	GTNAC	3 cut(s)	384, 775, 940
MalI	GATC	4 cut(s)	182, 477, 735, 1006
MboI	GATC	4 cut(s)	180, 475, 733, 1004
MboII	GAAGA	5 cut(s)	290, 440, 518, 980, 1060
MhlI	GDGCHC	1 cut(s)	250
MmeI	TCCRAC	1 cut(s)	786
MnlI	CCTC	6 cut(s)	119, 140, 278, 428, 821, 1076
MseI	TTAA	8 cut(s)	29, 96, 156, 317, 497, 524, 884, 903
MslI	CAYNNNNRTG	2 cut(s)	619, 699
MspI	CCGG	3 cut(s)	86, 123, 555
Mva1269I	GAATGC	1 cut(s)	47
MwoI	GCNNNNNNNGC	5 cut(s)	41, 143, 311, 710, 719
NdeII	GATC	4 cut(s)	180, 475, 733, 1004
NlaIII	CATG	1 cut(s)	957
NmuCI	GTSAC	1 cut(s)	940
NspV	TTCGAA	2 cut(s)	110, 426
OliI	CACNNNNGTG	1 cut(s)	699
PceI	AGGCCT	1 cut(s)	129
PctI	GAATGC	1 cut(s)	47
PfeI	GAWTC	7 cut(s)	107, 223, 236, 363, 598, 837, 922
PkrI	GCNGC	4 cut(s)	46, 313, 706, 856
Ppu21I	YACGTR	1 cut(s)	731
PshAI	GACNNNNGTC	1 cut(s)	938
PshBI	ATTAAT	2 cut(s)	29, 903
Psp1406I	AACGTT	1 cut(s)	160
PspPI	GGNCC	4 cut(s)	208, 445, 611, 808
RseI	CAYNNNNRTG	2 cut(s)	619, 699
SaqAI	TTAA	8 cut(s)	29, 96, 156, 317, 497, 524, 884, 903
SatI	GCNGC	4 cut(s)	45, 312, 705, 855
Sau3AI	GATC	4 cut(s)	180, 475, 733, 1004
Sau96I	GGNCC	4 cut(s)	208, 445, 611, 808
SduI	GDGCHC	1 cut(s)	250
SfaNI	GCATC	5 cut(s)	44, 257, 611, 671, 999
SfuI	TTCGAA	2 cut(s)	110, 426
SinI	GGWCC	3 cut(s)	208, 611, 808
SmiMI	CAYNNNNRTG	2 cut(s)	619, 699
SmlI	CTYRAG	1 cut(s)	380
SmoI	CTYRAG	1 cut(s)	380
SseBI	AGGCCT	1 cut(s)	129
SsiI	CCGC	1 cut(s)	69
SspI	AATATT	1 cut(s)	1076
SspMI	CTAG	1 cut(s)	585
StuI	AGGCCT	1 cut(s)	129
TaaI	ACNGT	2 cut(s)	295, 701
TaiI	ACGT	2 cut(s)	163, 733
TaqI	TCGA	5 cut(s)	110, 426, 459, 549, 744
TfiI	GAWTC	7 cut(s)	107, 223, 236, 363, 598, 837, 922
Tru1I	TTAA	8 cut(s)	29, 96, 156, 317, 497, 524, 884, 903
Tru9I	TTAA	8 cut(s)	29, 96, 156, 317, 497, 524, 884, 903
TscAI	CASTG	2 cut(s)	621, 949
TseFI	GTSAC	1 cut(s)	940
TseI	GCWGC	4 cut(s)	44, 311, 704, 854
Tsp45I	GTSAC	1 cut(s)	940
TspDTI	ATGAA	2 cut(s)	212, 216
TspRI	CASTG	2 cut(s)	621, 949
VneI	GTGCAC	1 cut(s)	246
VpaK11BI	GGWCC	3 cut(s)	208, 611, 808
VspI	ATTAAT	2 cut(s)	29, 903
XapI	RAATTY	8 cut(s)	112, 339, 545, 558, 589, 758, 886, 1045
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1037
XmiI	GTMKAC	1 cut(s)	290
XspI	CTAG	1 cut(s)	585

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.