Rh6BG342000

Belongs to the 'GDSL' lipolytic enzyme family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0014665
Physical Location & Seq
Reverse (-)
57435721 .. 57439248
3528 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG342000.1

Sequence Viewer

Length: 864 bp
ATGGCTCTGAAAGTAGTCTCCATCCTTCATTTCCTACCCTTTGTGTCTGCACTGTTACCTATAACTAGTATCCCCATCAATCTCACTTATCCGGCAGTTTTTAACTTCGGTGATTCGAATTCAGACACCGGAGGCCTTCAAGCAGGAGTCGGTTTTCCCATTAAACGCTTTTGCAATGGCTATTTGATCATAGACTATTTTGTGACTGCAATGGACCTACCCTATCTGAATCCTTACTTGGATTCAGTTGGTGCACCAAGCTTCCAAACAGGATGTAATTTTGCAACCGGGGGAGCTACCATTCTTCCAGCCAAAGCATCTTCAACAAATCCATTTTCCTTCGGAGTTCAGGTTGCTCAATTTGTCCGATTCAAGGCTCGAGTTCTTGAGTTACTGGGTGAGAAAGACAAGAAGCTTCAACCAGTCCTCCCATATGAAGATTATTTCAAGCAAGGCCTTTACACTTTTGATGTGGGACAGAATGATCTTGATGGTGCATTTTCTTCCAAATCAGAAGACCAAGTTGTTGCTTCAATTCCAGCTATTCTAACAGAACTCGAGACTGGATTTGAGAAACTATACAATCAGGGGGCTAGGAATTTTTGGATCCATAACACAGGTCCACTAGGATGCCTACCAAGAATTATAGCAACATTTGGGAAAGATCCATCAAATTTGAACCAGGTTGGATGTGTTGCTTCACATAACCGTGCTGCTACTGCTTTCAATGAACAACTACATGATCTTTGCTTGAAGTTTAAGAAAAACTTCCCTGAAGCTAATGTTACTTATGTTGACATCTTCACCATAAAGTTGGACCTCATCACAAACTATGCTCAATATGGTAACATGCCTTTTTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lipase_GDSL

Protein Analysis

287

Amino Acids

31.53

Weight (kDa)

5.8

Isoelectric Point (pI)

26.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lipase_GDSL PF00657 33 - 275 2.7e-37 GDSL-like Lipase/Acylhydrolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 3 cut(s) 601, 614, 659
AcsI RAATTY 3 cut(s) 118, 598, 673
AcuI CTGAAG 1 cut(s) 795
AfiI CCNNNNNNNGG 1 cut(s) 373
AgsI TTSAA 9 cut(s) 140, 324, 373, 419, 448, 534, 679, 727, 754
AhlI ACTAGT 1 cut(s) 65
AjnI CCWGG 1 cut(s) 681
AjuI GAANNNNNNNTTGG 2 cut(s) 221, 253
AluBI AGCT 5 cut(s) 261, 296, 415, 542, 779
AluI AGCT 5 cut(s) 261, 296, 415, 542, 779
Alw21I GWGCWC 1 cut(s) 256
Alw26I GTCTC 2 cut(s) 22, 554
Alw44I GTGCAC 1 cut(s) 252
AlwI GGATC 3 cut(s) 601, 614, 659
Ama87I CYCGRG 2 cut(s) 378, 557
AoxI GGCC 2 cut(s) 133, 454
ApaLI GTGCAC 1 cut(s) 252
ApeKI GCWGC 1 cut(s) 713
ApoI RAATTY 3 cut(s) 118, 598, 673
Asp700I GAANNNNTTC 1 cut(s) 767
AspS9I GGNCC 3 cut(s) 214, 620, 817
AsuC2I CCSGG 1 cut(s) 289
AsuHPI GGTGA 3 cut(s) 122, 410, 796
AsuII TTCGAA 1 cut(s) 116
AvaI CYCGRG 2 cut(s) 378, 557
AvaII GGWCC 3 cut(s) 214, 620, 817
BaeGI GKGCMC 1 cut(s) 256
BamHI GGATCC 1 cut(s) 606
BbsI GAAGAC 1 cut(s) 522
Bbv12I GWGCWC 1 cut(s) 256
BbvI GCAGC 1 cut(s) 700
BccI CCATC 4 cut(s) 29, 83, 485, 676
BciT130I CCWGG 1 cut(s) 683
BciVI GTATCC 1 cut(s) 80
BclI TGATCA 1 cut(s) 186
BcnI CCSGG 1 cut(s) 289
BcoDI GTCTC 2 cut(s) 22, 554
BcuI ACTAGT 1 cut(s) 65
BfaI CTAG 3 cut(s) 66, 594, 626
BfuI GTATCC 1 cut(s) 80
BisI GCNGC 1 cut(s) 714
BlsI GCNGC 1 cut(s) 715
Bme1390I CCNGG 2 cut(s) 289, 683
Bme18I GGWCC 3 cut(s) 214, 620, 817
BmeT110I CYCGRG 2 cut(s) 378, 557
BmgT120I GGNCC 3 cut(s) 214, 620, 817
BmiI GGNNCC 1 cut(s) 608
BmrFI CCNGG 2 cut(s) 289, 683
BmrI ACTGGG 1 cut(s) 404
BmsI GCATC 2 cut(s) 326, 620
BmuI ACTGGG 1 cut(s) 404
BpiI GAAGAC 1 cut(s) 522
Bpu14I TTCGAA 1 cut(s) 116
BpuEI CTTGAG 1 cut(s) 407
BpuMI CCSGG 1 cut(s) 289
BsaJI CCNNGG 1 cut(s) 288
BsaWI WCCGGW 1 cut(s) 128
BsaXI ACNNNNNCTCC 4 cut(s) 336, 366, 411, 441
Bsc4I CCNNNNNNNGG 1 cut(s) 373
Bse1I ACTGG 3 cut(s) 399, 422, 568
Bse3DI GCAATG 2 cut(s) 181, 216
BseBI CCWGG 1 cut(s) 683
BseDI CCNNGG 1 cut(s) 288
BseGI GGATG 4 cut(s) 21, 278, 635, 695
BseLI CCNNNNNNNGG 1 cut(s) 373
BseMI GCAATG 2 cut(s) 181, 216
BseNI ACTGG 3 cut(s) 399, 422, 568
BseSI GKGCMC 1 cut(s) 256
BseXI GCAGC 1 cut(s) 700
BsgI GTGCAG 1 cut(s) 33
BshFI GGCC 2 cut(s) 135, 456
BsiHKAI GWGCWC 1 cut(s) 256
BsiHKCI CYCGRG 2 cut(s) 378, 557
BsiSI CCGG 3 cut(s) 92, 129, 288
BslFI GGGAC 1 cut(s) 489
BslI CCNNNNNNNGG 1 cut(s) 373
BsmAI GTCTC 2 cut(s) 22, 554
BsmFI GGGAC 1 cut(s) 489
BsnI GGCC 2 cut(s) 135, 456
BsoBI CYCGRG 2 cut(s) 378, 557
Bsp119I TTCGAA 1 cut(s) 116
Bsp1286I GDGCHC 1 cut(s) 256
Bsp143I GATC 5 cut(s) 186, 484, 606, 664, 742
BspANI GGCC 2 cut(s) 135, 456
BspLI GGNNCC 1 cut(s) 608
BspPI GGATC 3 cut(s) 601, 614, 659
BspT104I TTCGAA 1 cut(s) 116
BsrDI GCAATG 2 cut(s) 181, 216
BsrI ACTGG 3 cut(s) 399, 422, 568
BssECI CCNNGG 1 cut(s) 288
BssMI GATC 5 cut(s) 186, 484, 606, 664, 742
Bst2UI CCWGG 1 cut(s) 683
Bst4CI ACNGT 2 cut(s) 54, 710
BstBI TTCGAA 1 cut(s) 116
BstF5I GGATG 4 cut(s) 21, 278, 635, 695
BstKTI GATC 5 cut(s) 189, 487, 609, 667, 745
BstMAI GTCTC 2 cut(s) 22, 554
BstMBI GATC 5 cut(s) 186, 484, 606, 664, 742
BstMWI GCNNNNNNNGC 1 cut(s) 719
BstNI CCWGG 1 cut(s) 683
BstNSI RCATGY 1 cut(s) 853
BstSCI CCNGG 2 cut(s) 287, 681
BstSLI GKGCMC 1 cut(s) 256
BstV1I GCAGC 1 cut(s) 700
BstV2I GAAGAC 1 cut(s) 522
BstX2I RGATCY 2 cut(s) 606, 664
BstXI CCANNNNNNTGG 1 cut(s) 814
BstYI RGATCY 2 cut(s) 606, 664
BsuI GTATCC 1 cut(s) 80
BsuRI GGCC 2 cut(s) 135, 456
BtsCI GGATG 4 cut(s) 21, 278, 635, 695
BtsIMutI CAGTG 1 cut(s) 50
Cfr13I GGNCC 3 cut(s) 214, 620, 817
CsiI ACCWGGT 1 cut(s) 681
CviAII CATG 2 cut(s) 740, 850
DpnI GATC 5 cut(s) 188, 486, 608, 666, 744
DpnII GATC 5 cut(s) 186, 484, 606, 664, 742
Eco147I AGGCCT 2 cut(s) 135, 456
Eco47I GGWCC 3 cut(s) 214, 620, 817
Eco57I CTGAAG 1 cut(s) 795
Eco88I CYCGRG 2 cut(s) 378, 557
EcoRI GAATTC 1 cut(s) 118
EcoRII CCWGG 1 cut(s) 681
FaeI CATG 2 cut(s) 743, 853
FalI AAGNNNNNCTT 2 cut(s) 752, 784
FaqI GGGAC 1 cut(s) 489
FatI CATG 2 cut(s) 739, 849
FauNDI CATATG 1 cut(s) 433
FbaI TGATCA 1 cut(s) 186
Fnu4HI GCNGC 1 cut(s) 714
FokI GGATG 4 cut(s) 8, 285, 642, 702
Fsp4HI GCNGC 1 cut(s) 714
FspBI CTAG 3 cut(s) 66, 594, 626
GluI GCNGC 1 cut(s) 714
HaeIII GGCC 2 cut(s) 135, 456
HapII CCGG 3 cut(s) 92, 129, 288
Hin1II CATG 2 cut(s) 743, 853
HincII GTYRAC 1 cut(s) 796
HindII GTYRAC 1 cut(s) 796
HindIII AAGCTT 2 cut(s) 259, 413
HinfI GANTC 5 cut(s) 113, 147, 229, 242, 369
HpaII CCGG 3 cut(s) 92, 129, 288
HphI GGTGA 3 cut(s) 122, 410, 796
Hpy166II GTNNAC 3 cut(s) 254, 623, 796
Hpy188I TCNGA 6 cut(s) 9, 124, 228, 344, 368, 514
Hpy188III TCNNGA 3 cut(s) 386, 488, 559
Hpy8I GTNNAC 3 cut(s) 254, 623, 796
HpyAV CCTTC 3 cut(s) 35, 146, 349
HpyCH4III ACNGT 2 cut(s) 54, 710
HpyCH4V TGCA 6 cut(s) 50, 174, 209, 254, 284, 497
HpyF10VI GCNNNNNNNGC 1 cut(s) 719
Hsp92II CATG 2 cut(s) 743, 853
Ksp22I TGATCA 1 cut(s) 186
Kzo9I GATC 5 cut(s) 186, 484, 606, 664, 742
LmnI GCTCC 1 cut(s) 293
Lsp1109I GCAGC 1 cut(s) 700
LweI GCATC 2 cut(s) 326, 620
MabI ACCWGGT 1 cut(s) 681
MaeI CTAG 3 cut(s) 66, 594, 626
MaeIII GTNAC 5 cut(s) 54, 202, 390, 784, 845
MalI GATC 5 cut(s) 188, 486, 608, 666, 744
MboI GATC 5 cut(s) 186, 484, 606, 664, 742
MboII GAAGA 6 cut(s) 296, 312, 449, 495, 527, 793
MflI RGATCY 2 cut(s) 606, 664
MhlI GDGCHC 1 cut(s) 256
MluCI AATT 7 cut(s) 118, 277, 359, 534, 598, 642, 673
MlyI GAGTC 1 cut(s) 156
MmeI TCCRAC 2 cut(s) 667, 795
MnlI CCTC 3 cut(s) 125, 437, 830
MroXI GAANNNNTTC 1 cut(s) 767
MseI TTAA 3 cut(s) 102, 162, 759
MslI CAYNNNNRTG 2 cut(s) 628, 708
MspI CCGG 3 cut(s) 92, 129, 288
MspR9I CCNGG 2 cut(s) 289, 683
MvaI CCWGG 1 cut(s) 683
MwoI GCNNNNNNNGC 1 cut(s) 719
NciI CCSGG 1 cut(s) 289
NdeI CATATG 1 cut(s) 433
NdeII GATC 5 cut(s) 186, 484, 606, 664, 742
NlaIII CATG 2 cut(s) 743, 853
NlaIV GGNNCC 1 cut(s) 608
NmuCI GTSAC 1 cut(s) 202
NspI RCATGY 1 cut(s) 853
NspV TTCGAA 1 cut(s) 116
PaeR7I CTCGAG 2 cut(s) 378, 557
PceI AGGCCT 2 cut(s) 135, 456
PdmI GAANNNNTTC 1 cut(s) 767
PfeI GAWTC 4 cut(s) 113, 229, 242, 369
PkrI GCNGC 1 cut(s) 715
PleI GAGTC 1 cut(s) 155
PpsI GAGTC 1 cut(s) 155
Psp6I CCWGG 1 cut(s) 681
PspGI CCWGG 1 cut(s) 681
PspN4I GGNNCC 1 cut(s) 608
PspPI GGNCC 3 cut(s) 214, 620, 817
PspXI VCTCGAGB 1 cut(s) 378
PsuI RGATCY 2 cut(s) 606, 664
RseI CAYNNNNRTG 2 cut(s) 628, 708
SaqAI TTAA 3 cut(s) 102, 162, 759
SatI GCNGC 1 cut(s) 714
Sau3AI GATC 5 cut(s) 186, 484, 606, 664, 742
Sau96I GGNCC 3 cut(s) 214, 620, 817
SchI GAGTC 1 cut(s) 156
ScrFI CCNGG 2 cut(s) 289, 683
SduI GDGCHC 1 cut(s) 256
SexAI ACCWGGT 1 cut(s) 681
SfaNI GCATC 2 cut(s) 326, 620
Sfr274I CTCGAG 2 cut(s) 378, 557
SfuI TTCGAA 1 cut(s) 116
SinI GGWCC 3 cut(s) 214, 620, 817
SlaI CTCGAG 2 cut(s) 378, 557
SmiMI CAYNNNNRTG 2 cut(s) 628, 708
SmlI CTYRAG 3 cut(s) 378, 386, 557
SmoI CTYRAG 3 cut(s) 378, 386, 557
SpeI ACTAGT 1 cut(s) 65
Sse9I AATT 7 cut(s) 118, 277, 359, 534, 598, 642, 673
SseBI AGGCCT 2 cut(s) 135, 456
SspMI CTAG 3 cut(s) 66, 594, 626
StuI AGGCCT 2 cut(s) 135, 456
StyD4I CCNGG 2 cut(s) 287, 681
TaaI ACNGT 2 cut(s) 54, 710
TaqI TCGA 3 cut(s) 116, 379, 558
TasI AATT 7 cut(s) 118, 277, 359, 534, 598, 642, 673
TfiI GAWTC 4 cut(s) 113, 229, 242, 369
Tru1I TTAA 3 cut(s) 102, 162, 759
Tru9I TTAA 3 cut(s) 102, 162, 759
TscAI CASTG 1 cut(s) 57
TseFI GTSAC 1 cut(s) 202
TseI GCWGC 1 cut(s) 713
Tsp45I GTSAC 1 cut(s) 202
TspDTI ATGAA 4 cut(s) 17, 450, 744, 849
TspRI CASTG 1 cut(s) 57
VneI GTGCAC 1 cut(s) 252
VpaK11BI GGWCC 3 cut(s) 214, 620, 817
XapI RAATTY 3 cut(s) 118, 598, 673
XceI RCATGY 1 cut(s) 853
XhoI CTCGAG 2 cut(s) 378, 557
XmnI GAANNNNTTC 1 cut(s) 767
XspI CTAG 3 cut(s) 66, 594, 626
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.