Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001043.1

Orthogroup ID

OG0014665

Physical Location & Seq

Genomic Coordinates Reverse (-)

67941 .. 69445

Gene Structure 1505 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001043.1_g000016.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1071 bp

atggctctgaaagtagtctccatccttcatttcctaccctttgtgtctgcactgttacctataactagtatccccatcaatctcacttatccggcagtttttaacttcggtgattcgaattcagacaccggaggccttcaagcaggagtcgtgactacaatggacctaccctatctgaatccttacttggattcagttggtgcaccaagcttccaaacaggatgtaattttgcaacggggggagctaccattcttccagccaaagcatcttcaacaaatccattttccttcggagttcaggttgctcaatttgtccgattcaaggctcgagttcttgagttactggctgagaaagacaagaagcttcaaccggtcctcccatatgaagattatttcaagcaaggcctttacacttttgatgtgggacagaatgatcttgatggtgcattttcttccaaatcagaagaccaagttgttgcttcaattccagctattctaacagaactcgagactggatttgagaaactatacaatcagggggctaggaatttttggatccataacacaggtccactaggatgcctaccaagaattatagcaacatttgggaaagatccatcaaatttgaaccaggttggatgtgttgcttcacataacagtgctgctactgctttcaatgaacaactacatgatctttgcttgaagtttaagaaaaacttccctgaagctaatgttacttatgttgacatcttcaccataaagttggacctcatcacaaactatgctcaatatggtttcaaacaaggcatagcagcttgctgtgggtatggtggtccgccattaaattttgataaccggatagcttgtggccagaccaagaatctaaatgggactgtggtcactgcaacaccatgcagtaatccagctgagtatgtgaattgggatggtaatcattatacagaagctgcaaatcaatatgtgtcatcgcagatattaacaggaaactactcagactacttgaactcttcaattggaagcaaaatttcttatgggaatccaaaccttgagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_GDSL

Protein Analysis

356

Amino Acids

38.59

Weight (kDa)

5.26

Isoelectric Point (pI)

24.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014665)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g24060 FvH4_2g24060
prunus_persica	Prupe.8G246100_v2.0.a1 Prupe.8G246400_v2.0.a1 Prupe.8G246400_v2.0.a1 Prupe.8G246700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0291841
rosa_laevigata	RLG00000012084
rosa_multiflora	Rmu_sc0001043.1_g000016
rosa_roxburghii	Rroxscaffold_7G00175710
rosa_rugosa	Rorug06G0221700
rosa_samantha	Rh6AG334600 Rh6BG342000 Rh6CG347900 Rh6DG334900
rosa_wichuraiana	Rw6G028940 Rw6G029120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	836
AclWI	GGATC	3 cut(s)	550, 563, 608
AcoI	YGGCCR	1 cut(s)	868
AcsI	RAATTY	5 cut(s)	118, 547, 622, 844, 1041
AcuI	CTGAAG	1 cut(s)	744
AfiI	CCNNNNNNNGG	1 cut(s)	322
AgeI	ACCGGT	1 cut(s)	370
AhlI	ACTAGT	1 cut(s)	65
AjnI	CCWGG	1 cut(s)	630
AjuI	GAANNNNNNNTTGG	2 cut(s)	170, 202
AluBI	AGCT	9 cut(s)	210, 245, 364, 491, 728, 815, 863, 926, 965
AluI	AGCT	9 cut(s)	210, 245, 364, 491, 728, 815, 863, 926, 965
Alw21I	GWGCWC	1 cut(s)	205
Alw26I	GTCTC	2 cut(s)	22, 503
Alw44I	GTGCAC	1 cut(s)	201
AlwI	GGATC	3 cut(s)	550, 563, 608
AlwNI	CAGNNNCTG	1 cut(s)	965
Ama87I	CYCGRG	2 cut(s)	327, 506
AoxI	GGCC	3 cut(s)	133, 403, 868
ApaLI	GTGCAC	1 cut(s)	201
ApeKI	GCWGC	3 cut(s)	662, 812, 965
ApoI	RAATTY	5 cut(s)	118, 547, 622, 844, 1041
AsiGI	ACCGGT	1 cut(s)	370
Asp700I	GAANNNNTTC	1 cut(s)	716
AspS9I	GGNCC	5 cut(s)	163, 373, 569, 766, 833
AsuHPI	GGTGA	2 cut(s)	122, 745
AsuII	TTCGAA	1 cut(s)	116
AvaI	CYCGRG	2 cut(s)	327, 506
AvaII	GGWCC	5 cut(s)	163, 373, 569, 766, 833
BaeGI	GKGCMC	1 cut(s)	205
BalI	TGGCCA	1 cut(s)	870
BamHI	GGATCC	1 cut(s)	555
BbsI	GAAGAC	1 cut(s)	471
Bbv12I	GWGCWC	1 cut(s)	205
BbvI	GCAGC	3 cut(s)	649, 824, 952
BccI	CCATC	5 cut(s)	29, 83, 434, 625, 938
BciT130I	CCWGG	1 cut(s)	632
BciVI	GTATCC	1 cut(s)	80
BcoDI	GTCTC	2 cut(s)	22, 503
BcuI	ACTAGT	1 cut(s)	65
BfaI	CTAG	3 cut(s)	66, 543, 575
BfuI	GTATCC	1 cut(s)	80
BisI	GCNGC	3 cut(s)	663, 813, 966
BlsI	GCNGC	3 cut(s)	664, 814, 967
Bme1390I	CCNGG	1 cut(s)	632
Bme18I	GGWCC	5 cut(s)	163, 373, 569, 766, 833
BmeT110I	CYCGRG	2 cut(s)	327, 506
BmgT120I	GGNCC	5 cut(s)	163, 373, 569, 766, 833
BmiI	GGNNCC	1 cut(s)	557
BmrFI	CCNGG	1 cut(s)	632
BmsI	GCATC	2 cut(s)	275, 569
BoxI	GACNNNNGTC	1 cut(s)	896
BpiI	GAAGAC	1 cut(s)	471
Bpu14I	TTCGAA	1 cut(s)	116
BpuEI	CTTGAG	1 cut(s)	356
BsaBI	GATNNNNATC	1 cut(s)	948
BsaWI	WCCGGW	3 cut(s)	128, 370, 855
BsaXI	ACNNNNNCTCC	4 cut(s)	285, 315, 360, 390
Bsc4I	CCNNNNNNNGG	1 cut(s)	322
Bse118I	RCCGGY	1 cut(s)	370
Bse1I	ACTGG	2 cut(s)	348, 517
Bse8I	GATNNNNATC	1 cut(s)	948
BseBI	CCWGG	1 cut(s)	632
BseGI	GGATG	5 cut(s)	21, 227, 584, 644, 949
BseJI	GATNNNNATC	1 cut(s)	948
BseLI	CCNNNNNNNGG	1 cut(s)	322
BseMII	CTCAG	3 cut(s)	339, 918, 1023
BseNI	ACTGG	2 cut(s)	348, 517
BseSI	GKGCMC	1 cut(s)	205
BseXI	GCAGC	3 cut(s)	649, 824, 952
BsgI	GTGCAG	1 cut(s)	33
BshFI	GGCC	3 cut(s)	135, 405, 870
BshTI	ACCGGT	1 cut(s)	370
BsiHKAI	GWGCWC	1 cut(s)	205
BsiHKCI	CYCGRG	2 cut(s)	327, 506
BsiSI	CCGG	4 cut(s)	92, 129, 371, 856
BslFI	GGGAC	2 cut(s)	438, 904
BslI	CCNNNNNNNGG	1 cut(s)	322
BsmAI	GTCTC	2 cut(s)	22, 503
BsmFI	GGGAC	2 cut(s)	438, 904
BsnI	GGCC	3 cut(s)	135, 405, 870
BsoBI	CYCGRG	2 cut(s)	327, 506
Bsp119I	TTCGAA	1 cut(s)	116
Bsp1286I	GDGCHC	1 cut(s)	205
Bsp143I	GATC	4 cut(s)	433, 555, 613, 691
BspACI	CCGC	1 cut(s)	836
BspANI	GGCC	3 cut(s)	135, 405, 870
BspCNI	CTCAG	3 cut(s)	340, 919, 1022
BspLI	GGNNCC	1 cut(s)	557
BspPI	GGATC	3 cut(s)	550, 563, 608
BspT104I	TTCGAA	1 cut(s)	116
BsrFI	RCCGGY	1 cut(s)	370
BsrI	ACTGG	2 cut(s)	348, 517
BssAI	RCCGGY	1 cut(s)	370
BssMI	GATC	4 cut(s)	433, 555, 613, 691
Bst2UI	CCWGG	1 cut(s)	632
Bst4CI	ACNGT	3 cut(s)	54, 659, 895
Bst6I	CTCTTC	1 cut(s)	1030
BstBI	TTCGAA	1 cut(s)	116
BstC8I	GCNNGC	1 cut(s)	817
BstDEI	CTNAG	3 cut(s)	348, 927, 1009
BstF5I	GGATG	5 cut(s)	21, 227, 584, 644, 949
BstKTI	GATC	4 cut(s)	436, 558, 616, 694
BstMAI	GTCTC	2 cut(s)	22, 503
BstMBI	GATC	4 cut(s)	433, 555, 613, 691
BstMWI	GCNNNNNNNGC	1 cut(s)	668
BstNI	CCWGG	1 cut(s)	632
BstPAI	GACNNNNGTC	1 cut(s)	896
BstSCI	CCNGG	1 cut(s)	630
BstSLI	GKGCMC	1 cut(s)	205
BstV1I	GCAGC	3 cut(s)	649, 824, 952
BstV2I	GAAGAC	1 cut(s)	471
BstX2I	RGATCY	2 cut(s)	555, 613
BstXI	CCANNNNNNTGG	1 cut(s)	763
BstYI	RGATCY	2 cut(s)	555, 613
BsuI	GTATCC	1 cut(s)	80
BsuRI	GGCC	3 cut(s)	135, 405, 870
BtgZI	GCGATG	1 cut(s)	969
BtsCI	GGATG	5 cut(s)	21, 227, 584, 644, 949
BtsI	GCAGTG	1 cut(s)	900
BtsIMutI	CAGTG	3 cut(s)	50, 664, 900
Cac8I	GCNNGC	1 cut(s)	817
CaiI	CAGNNNCTG	1 cut(s)	965
Cfr10I	RCCGGY	1 cut(s)	370
Cfr13I	GGNCC	5 cut(s)	163, 373, 569, 766, 833
CsiI	ACCWGGT	1 cut(s)	630
CspAI	ACCGGT	1 cut(s)	370
CviAII	CATG	2 cut(s)	689, 912
DdeI	CTNAG	3 cut(s)	348, 927, 1009
DpnI	GATC	4 cut(s)	435, 557, 615, 693
DpnII	GATC	4 cut(s)	433, 555, 613, 691
EaeI	YGGCCR	1 cut(s)	868
Eam1104I	CTCTTC	1 cut(s)	1030
EarI	CTCTTC	1 cut(s)	1030
EciI	GGCGGA	1 cut(s)	825
Eco147I	AGGCCT	2 cut(s)	135, 405
Eco47I	GGWCC	5 cut(s)	163, 373, 569, 766, 833
Eco57I	CTGAAG	1 cut(s)	744
Eco88I	CYCGRG	2 cut(s)	327, 506
EcoRI	GAATTC	1 cut(s)	118
EcoRII	CCWGG	1 cut(s)	630
FaeI	CATG	2 cut(s)	692, 915
FalI	AAGNNNNNCTT	2 cut(s)	701, 733
FaqI	GGGAC	2 cut(s)	438, 904
FatI	CATG	2 cut(s)	688, 911
FauNDI	CATATG	1 cut(s)	382
Fnu4HI	GCNGC	3 cut(s)	663, 813, 966
FokI	GGATG	5 cut(s)	8, 234, 591, 651, 956
Fsp4HI	GCNGC	3 cut(s)	663, 813, 966
FspBI	CTAG	3 cut(s)	66, 543, 575
GluI	GCNGC	3 cut(s)	663, 813, 966
HaeIII	GGCC	3 cut(s)	135, 405, 870
HapII	CCGG	4 cut(s)	92, 129, 371, 856
Hin1II	CATG	2 cut(s)	692, 915
HincII	GTYRAC	1 cut(s)	745
HindII	GTYRAC	1 cut(s)	745
HindIII	AAGCTT	2 cut(s)	208, 362
HinfI	GANTC	7 cut(s)	113, 147, 178, 191, 318, 880, 1054
HpaII	CCGG	4 cut(s)	92, 129, 371, 856
HphI	GGTGA	2 cut(s)	122, 745
Hpy166II	GTNNAC	3 cut(s)	203, 572, 745
Hpy188I	TCNGA	7 cut(s)	9, 124, 177, 293, 317, 463, 1012
Hpy188III	TCNNGA	4 cut(s)	151, 335, 437, 508
Hpy8I	GTNNAC	3 cut(s)	203, 572, 745
HpyAV	CCTTC	3 cut(s)	35, 146, 298
HpyCH4III	ACNGT	3 cut(s)	54, 659, 895
HpyCH4V	TGCA	7 cut(s)	50, 203, 233, 446, 905, 915, 968
HpyF10VI	GCNNNNNNNGC	1 cut(s)	668
HpyF3I	CTNAG	3 cut(s)	348, 927, 1009
Hsp92II	CATG	2 cut(s)	692, 915
Kzo9I	GATC	4 cut(s)	433, 555, 613, 691
LmnI	GCTCC	1 cut(s)	242
Lsp1109I	GCAGC	3 cut(s)	649, 824, 952
LweI	GCATC	2 cut(s)	275, 569
MabI	ACCWGGT	1 cut(s)	630
MaeI	CTAG	3 cut(s)	66, 543, 575
MaeIII	GTNAC	5 cut(s)	54, 151, 339, 733, 898
MalI	GATC	4 cut(s)	435, 557, 615, 693
MboI	GATC	4 cut(s)	433, 555, 613, 691
MboII	GAAGA	7 cut(s)	245, 261, 398, 444, 476, 742, 1017
MfeI	CAATTG	1 cut(s)	1029
MflI	RGATCY	2 cut(s)	555, 613
MhlI	GDGCHC	1 cut(s)	205
MlsI	TGGCCA	1 cut(s)	870
MluNI	TGGCCA	1 cut(s)	870
MlyI	GAGTC	1 cut(s)	156
MmeI	TCCRAC	2 cut(s)	616, 744
MnlI	CCTC	3 cut(s)	125, 386, 779
Mox20I	TGGCCA	1 cut(s)	870
MroXI	GAANNNNTTC	1 cut(s)	716
MscI	TGGCCA	1 cut(s)	870
MseI	TTAA	4 cut(s)	102, 708, 842, 995
MslI	CAYNNNNRTG	2 cut(s)	577, 657
Msp20I	TGGCCA	1 cut(s)	870
MspA1I	CMGCKG	1 cut(s)	926
MspI	CCGG	4 cut(s)	92, 129, 371, 856
MspR9I	CCNGG	1 cut(s)	632
MunI	CAATTG	1 cut(s)	1029
MvaI	CCWGG	1 cut(s)	632
MwoI	GCNNNNNNNGC	1 cut(s)	668
NdeI	CATATG	1 cut(s)	382
NdeII	GATC	4 cut(s)	433, 555, 613, 691
NlaIII	CATG	2 cut(s)	692, 915
NlaIV	GGNNCC	1 cut(s)	557
NmuCI	GTSAC	2 cut(s)	151, 898
NspV	TTCGAA	1 cut(s)	116
PaeR7I	CTCGAG	2 cut(s)	327, 506
PceI	AGGCCT	2 cut(s)	135, 405
PdmI	GAANNNNTTC	1 cut(s)	716
PfeI	GAWTC	6 cut(s)	113, 178, 191, 318, 880, 1054
PinAI	ACCGGT	1 cut(s)	370
PkrI	GCNGC	3 cut(s)	664, 814, 967
PleI	GAGTC	1 cut(s)	155
PpsI	GAGTC	1 cut(s)	155
PshAI	GACNNNNGTC	1 cut(s)	896
Psp6I	CCWGG	1 cut(s)	630
PspGI	CCWGG	1 cut(s)	630
PspN4I	GGNNCC	1 cut(s)	557
PspPI	GGNCC	5 cut(s)	163, 373, 569, 766, 833
PspXI	VCTCGAGB	1 cut(s)	327
PstNI	CAGNNNCTG	1 cut(s)	965
PsuI	RGATCY	2 cut(s)	555, 613
PvuII	CAGCTG	1 cut(s)	926
RseI	CAYNNNNRTG	2 cut(s)	577, 657
SaqAI	TTAA	4 cut(s)	102, 708, 842, 995
SatI	GCNGC	3 cut(s)	663, 813, 966
Sau3AI	GATC	4 cut(s)	433, 555, 613, 691
Sau96I	GGNCC	5 cut(s)	163, 373, 569, 766, 833
SchI	GAGTC	1 cut(s)	156
ScrFI	CCNGG	1 cut(s)	632
SduI	GDGCHC	1 cut(s)	205
SexAI	ACCWGGT	1 cut(s)	630
SfaNI	GCATC	2 cut(s)	275, 569
Sfr274I	CTCGAG	2 cut(s)	327, 506
SfuI	TTCGAA	1 cut(s)	116
SinI	GGWCC	5 cut(s)	163, 373, 569, 766, 833
SlaI	CTCGAG	2 cut(s)	327, 506
SmiMI	CAYNNNNRTG	2 cut(s)	577, 657
SmlI	CTYRAG	4 cut(s)	327, 335, 506, 1064
SmoI	CTYRAG	4 cut(s)	327, 335, 506, 1064
SpeI	ACTAGT	1 cut(s)	65
SseBI	AGGCCT	2 cut(s)	135, 405
SsiI	CCGC	1 cut(s)	836
SspMI	CTAG	3 cut(s)	66, 543, 575
StuI	AGGCCT	2 cut(s)	135, 405
StyD4I	CCNGG	1 cut(s)	630
TaaI	ACNGT	3 cut(s)	54, 659, 895
TaqI	TCGA	3 cut(s)	116, 328, 507
TfiI	GAWTC	6 cut(s)	113, 178, 191, 318, 880, 1054
Tru1I	TTAA	4 cut(s)	102, 708, 842, 995
Tru9I	TTAA	4 cut(s)	102, 708, 842, 995
TscAI	CASTG	3 cut(s)	57, 664, 907
TseFI	GTSAC	2 cut(s)	151, 898
TseI	GCWGC	3 cut(s)	662, 812, 965
Tsp45I	GTSAC	2 cut(s)	151, 898
TspDTI	ATGAA	3 cut(s)	17, 399, 693
TspRI	CASTG	3 cut(s)	57, 664, 907
VneI	GTGCAC	1 cut(s)	201
VpaK11BI	GGWCC	5 cut(s)	163, 373, 569, 766, 833
XapI	RAATTY	5 cut(s)	118, 547, 622, 844, 1041
XhoI	CTCGAG	2 cut(s)	327, 506
XmnI	GAANNNNTTC	1 cut(s)	716
XspI	CTAG	3 cut(s)	66, 543, 575

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.