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| Species | Orthologous Gene IDs |
|---|---|
| pyrus_communis | pycom01g02010 pycom01g05050 pycom01g06360 pycom01g19880 pycom02g18830 pycom02g18850 pycom03g01690 pycom03g01700 pycom1146g00070 pycom11g21810 pycom13g16900 pycom13g21090 pycom13g26460 pycom15g08640 pycom520g00260 pycom520g01180 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 2952, 3327 |
| AasI | GACNNNNNNGTC | 2 cut(s) | 922, 1258 |
| AatII | GACGTC | 1 cut(s) | 1582 |
| Acc36I | ACCTGC | 3 cut(s) | 480, 644, 1748 |
| AccB1I | GGYRCC | 3 cut(s) | 237, 263, 2106 |
| AccB7I | CCANNNNNTGG | 3 cut(s) | 1919, 2189, 2322 |
| AccBSI | CCGCTC | 1 cut(s) | 269 |
| AccI | GTMKAC | 1 cut(s) | 468 |
| AccII | CGCG | 3 cut(s) | 1300, 1694, 2138 |
| AclWI | GGATC | 3 cut(s) | 1044, 1082, 3639 |
| AcoI | YGGCCR | 2 cut(s) | 1114, 1899 |
| AcsI | RAATTY | 9 cut(s) | 306, 778, 1944, 2237, 2253, 2331, 2624, 2870, 3145 |
| AcuI | CTGAAG | 2 cut(s) | 852, 1032 |
| AcvI | CACGTG | 2 cut(s) | 1346, 2606 |
| AcyI | GRCGYC | 3 cut(s) | 238, 1579, 1797 |
| AfiI | CCNNNNNNNGG | 9 cut(s) | 719, 846, 1635, 1753, 1919, 2041, 2189, 2211, 2322 |
| AflII | CTTAAG | 2 cut(s) | 1741, 2443 |
| AflIII | ACRYGT | 2 cut(s) | 389, 2605 |
| AjiI | CACGTC | 1 cut(s) | 1120 |
| AjnI | CCWGG | 8 cut(s) | 462, 1093, 1242, 1896, 2054, 2073, 2908, 3295 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 833, 865, 2610, 2642 |
| AleI | CACNNNNGTG | 1 cut(s) | 1679 |
| Alw21I | GWGCWC | 3 cut(s) | 374, 1454, 1661 |
| Alw26I | GTCTC | 2 cut(s) | 1126, 2184 |
| AlwI | GGATC | 3 cut(s) | 1044, 1082, 3639 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1862 |
| Ama87I | CYCGRG | 3 cut(s) | 743, 1543, 1660 |
| ApoI | RAATTY | 9 cut(s) | 306, 778, 1944, 2237, 2253, 2331, 2624, 2870, 3145 |
| AseI | ATTAAT | 2 cut(s) | 3423, 3533 |
| Asp700I | GAANNNNTTC | 4 cut(s) | 714, 782, 2659, 3156 |
| AspA2I | CCTAGG | 1 cut(s) | 2087 |
| AspLEI | GCGC | 5 cut(s) | 240, 1156, 1212, 1694, 1861 |
| AsuC2I | CCSGG | 2 cut(s) | 707, 1575 |
| AsuHPI | GGTGA | 8 cut(s) | 962, 1109, 1666, 1733, 2783, 3275, 3427, 3591 |
| AsuII | TTCGAA | 1 cut(s) | 1621 |
| AsuNHI | GCTAGC | 1 cut(s) | 458 |
| AvaI | CYCGRG | 3 cut(s) | 743, 1543, 1660 |
| AvaII | GGWCC | 3 cut(s) | 1260, 1466, 2071 |
| AvrII | CCTAGG | 1 cut(s) | 2087 |
| BaeGI | GKGCMC | 1 cut(s) | 1642 |
| BalI | TGGCCA | 1 cut(s) | 1116 |
| BanI | GGYRCC | 3 cut(s) | 237, 263, 2106 |
| BanII | GRGCYC | 2 cut(s) | 1955, 2125 |
| BauI | CACGAG | 4 cut(s) | 1418, 1491, 2415, 2865 |
| BbrPI | CACGTG | 2 cut(s) | 1346, 2606 |
| Bbv12I | GWGCWC | 3 cut(s) | 374, 1454, 1661 |
| BbvCI | CCTCAGC | 1 cut(s) | 3442 |
| BccI | CCATC | 4 cut(s) | 1901, 2141, 3288, 3294 |
| BceAI | ACGGC | 7 cut(s) | 871, 1713, 1769, 1886, 2094, 2917, 3528 |
| BcgI | CGANNNNNNTGC | 6 cut(s) | 724, 758, 935, 969, 2936, 2970 |
| BciT130I | CCWGG | 8 cut(s) | 464, 1095, 1244, 1898, 2056, 2075, 2910, 3297 |
| BciVI | GTATCC | 1 cut(s) | 339 |
| BclI | TGATCA | 1 cut(s) | 2388 |
| BcnI | CCSGG | 2 cut(s) | 707, 1575 |
| BcoDI | GTCTC | 2 cut(s) | 1126, 2184 |
| BfaI | CTAG | 8 cut(s) | 459, 531, 693, 732, 863, 1214, 1413, 2088 |
| BfmI | CTRYAG | 4 cut(s) | 637, 876, 1763, 2854 |
| BfoI | RGCGCY | 2 cut(s) | 241, 1862 |
| BfrI | CTTAAG | 2 cut(s) | 1741, 2443 |
| BfuAI | ACCTGC | 3 cut(s) | 480, 644, 1748 |
| BfuI | GTATCC | 1 cut(s) | 339 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 1898 |
| BglII | AGATCT | 3 cut(s) | 1000, 1874, 2299 |
| BlnI | CCTAGG | 1 cut(s) | 2087 |
| BmcAI | AGTACT | 2 cut(s) | 749, 3394 |
| Bme18I | GGWCC | 3 cut(s) | 1260, 1466, 2071 |
| BmeT110I | CYCGRG | 3 cut(s) | 743, 1543, 1660 |
| BmgBI | CACGTC | 1 cut(s) | 1120 |
| BmrI | ACTGGG | 1 cut(s) | 43 |
| BmsI | GCATC | 7 cut(s) | 1066, 1143, 1656, 2316, 2372, 3309, 3348 |
| BmtI | GCTAGC | 1 cut(s) | 462 |
| BmuI | ACTGGG | 1 cut(s) | 43 |
| BpmI | CTGGAG | 1 cut(s) | 1217 |
| Bpu10I | CCTNAGC | 3 cut(s) | 2012, 2399, 3442 |
| Bpu14I | TTCGAA | 1 cut(s) | 1621 |
| BpuEI | CTTGAG | 1 cut(s) | 2168 |
| BpuMI | CCSGG | 2 cut(s) | 707, 1575 |
| Bsa29I | ATCGAT | 1 cut(s) | 3303 |
| BsaAI | YACGTR | 5 cut(s) | 139, 1346, 2208, 2606, 2680 |
| BsaBI | GATNNNNATC | 2 cut(s) | 1079, 2157 |
| BsaHI | GRCGYC | 3 cut(s) | 238, 1579, 1797 |
| BsaJI | CCNNGG | 9 cut(s) | 216, 1242, 1298, 1677, 2054, 2055, 2074, 2087, 2110 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 135, 165, 2721, 2751, 3078, 3108 |
| Bsc4I | CCNNNNNNNGG | 9 cut(s) | 719, 846, 1635, 1753, 1919, 2041, 2189, 2211, 2322 |
| Bse1I | ACTGG | 2 cut(s) | 49, 1234 |
| Bse3DI | GCAATG | 3 cut(s) | 414, 735, 3203 |
| Bse8I | GATNNNNATC | 2 cut(s) | 1079, 2157 |
| BseBI | CCWGG | 8 cut(s) | 464, 1095, 1244, 1898, 2056, 2075, 2910, 3297 |
| BseCI | ATCGAT | 1 cut(s) | 3303 |
| BseDI | CCNNGG | 9 cut(s) | 216, 1242, 1298, 1677, 2054, 2055, 2074, 2087, 2110 |
| BseGI | GGATG | 5 cut(s) | 103, 508, 752, 1893, 2331 |
| BseJI | GATNNNNATC | 2 cut(s) | 1079, 2157 |
| BseLI | CCNNNNNNNGG | 9 cut(s) | 719, 846, 1635, 1753, 1919, 2041, 2189, 2211, 2322 |
| BseMI | GCAATG | 3 cut(s) | 414, 735, 3203 |
| BseMII | CTCAG | 5 cut(s) | 417, 811, 1550, 1968, 3456 |
| BseNI | ACTGG | 2 cut(s) | 49, 1234 |
| BseRI | GAGGAG | 3 cut(s) | 1678, 2115, 2802 |
| BseSI | GKGCMC | 1 cut(s) | 1642 |
| BseYI | CCCAGC | 2 cut(s) | 1167, 1999 |
| BsgI | GTGCAG | 1 cut(s) | 2937 |
| Bsh1236I | CGCG | 3 cut(s) | 1300, 1694, 2138 |
| BshNI | GGYRCC | 3 cut(s) | 237, 263, 2106 |
| BshVI | ATCGAT | 1 cut(s) | 3303 |
| BsiHKAI | GWGCWC | 3 cut(s) | 374, 1454, 1661 |
| BsiHKCI | CYCGRG | 3 cut(s) | 743, 1543, 1660 |
| BsiSI | CCGG | 3 cut(s) | 184, 707, 1574 |
| BslFI | GGGAC | 2 cut(s) | 1590, 3262 |
| BslI | CCNNNNNNNGG | 9 cut(s) | 719, 846, 1635, 1753, 1919, 2041, 2189, 2211, 2322 |
| BsmAI | GTCTC | 2 cut(s) | 1126, 2184 |
| BsmBI | CGTCTC | 2 cut(s) | 1126, 2184 |
| BsmFI | GGGAC | 2 cut(s) | 1590, 3262 |
| BsmI | GAATGC | 2 cut(s) | 661, 1484 |
| BsoBI | CYCGRG | 3 cut(s) | 743, 1543, 1660 |
| Bsp119I | TTCGAA | 1 cut(s) | 1621 |
| Bsp1286I | GDGCHC | 6 cut(s) | 374, 1454, 1642, 1661, 1955, 2125 |
| Bsp1407I | TGTACA | 3 cut(s) | 174, 1526, 3055 |
| Bsp143I | GATC | 9 cut(s) | 689, 1000, 1036, 1074, 1348, 1874, 2299, 2388, 3631 |
| BspCNI | CTCAG | 5 cut(s) | 418, 810, 1551, 1967, 3455 |
| BspDI | ATCGAT | 1 cut(s) | 3303 |
| BspFNI | CGCG | 3 cut(s) | 1300, 1694, 2138 |
| BspHI | TCATGA | 3 cut(s) | 39, 774, 3141 |
| BspMAI | CTGCAG | 3 cut(s) | 641, 1767, 2858 |
| BspMI | ACCTGC | 3 cut(s) | 480, 644, 1748 |
| BspOI | GCTAGC | 1 cut(s) | 462 |
| BspPI | GGATC | 3 cut(s) | 1044, 1082, 3639 |
| BspQI | GCTCTTC | 1 cut(s) | 1277 |
| BspT104I | TTCGAA | 1 cut(s) | 1621 |
| BspT107I | GGYRCC | 3 cut(s) | 237, 263, 2106 |
| BspTI | CTTAAG | 2 cut(s) | 1741, 2443 |
| BsrBI | CCGCTC | 1 cut(s) | 269 |
| BsrDI | GCAATG | 3 cut(s) | 414, 735, 3203 |
| BsrGI | TGTACA | 3 cut(s) | 174, 1526, 3055 |
| BsrI | ACTGG | 2 cut(s) | 49, 1234 |
| BssECI | CCNNGG | 9 cut(s) | 216, 1242, 1298, 1677, 2054, 2055, 2074, 2087, 2110 |
| BssMI | GATC | 9 cut(s) | 689, 1000, 1036, 1074, 1348, 1874, 2299, 2388, 3631 |
| BssNI | GRCGYC | 3 cut(s) | 238, 1579, 1797 |
| BssSI | CACGAG | 4 cut(s) | 1418, 1491, 2415, 2865 |
| BssT1I | CCWWGG | 3 cut(s) | 216, 1677, 2087 |
| Bst2BI | CACGAG | 4 cut(s) | 1418, 1491, 2415, 2865 |
| Bst2UI | CCWGG | 8 cut(s) | 464, 1095, 1244, 1898, 2056, 2075, 2910, 3297 |
| Bst4CI | ACNGT | 6 cut(s) | 763, 805, 950, 2780, 2881, 3186 |
| Bst6I | CTCTTC | 3 cut(s) | 253, 915, 1277 |
| BstACI | GRCGYC | 3 cut(s) | 238, 1579, 1797 |
| BstAFI | CTTAAG | 2 cut(s) | 1741, 2443 |
| BstAUI | TGTACA | 3 cut(s) | 174, 1526, 3055 |
| BstBAI | YACGTR | 5 cut(s) | 139, 1346, 2208, 2606, 2680 |
| BstBI | TTCGAA | 1 cut(s) | 1621 |
| BstDSI | CCRYGG | 2 cut(s) | 1298, 2110 |
| BstF5I | GGATG | 5 cut(s) | 103, 508, 752, 1893, 2331 |
| BstFNI | CGCG | 3 cut(s) | 1300, 1694, 2138 |
| BstH2I | RGCGCY | 2 cut(s) | 241, 1862 |
| BstHHI | GCGC | 5 cut(s) | 240, 1156, 1212, 1694, 1861 |
| BstKTI | GATC | 9 cut(s) | 692, 1003, 1039, 1077, 1351, 1877, 2302, 2391, 3634 |
| BstMAI | GTCTC | 2 cut(s) | 1126, 2184 |
| BstMBI | GATC | 9 cut(s) | 689, 1000, 1036, 1074, 1348, 1874, 2299, 2388, 3631 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 732, 1246, 1312, 1898, 1971, 2028, 2129, 3384 |
| BstNI | CCWGG | 8 cut(s) | 464, 1095, 1244, 1898, 2056, 2075, 2910, 3297 |
| BstNSI | RCATGY | 4 cut(s) | 393, 600, 1315, 3107 |
| BstSFI | CTRYAG | 4 cut(s) | 637, 876, 1763, 2854 |
| BstSLI | GKGCMC | 1 cut(s) | 1642 |
| BstSNI | TACGTA | 1 cut(s) | 2680 |
| BstUI | CGCG | 3 cut(s) | 1300, 1694, 2138 |
| BstX2I | RGATCY | 5 cut(s) | 1000, 1074, 1874, 2299, 3631 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 2062 |
| BstYI | RGATCY | 5 cut(s) | 1000, 1074, 1874, 2299, 3631 |
| Bsu15I | ATCGAT | 1 cut(s) | 3303 |
| BsuI | GTATCC | 1 cut(s) | 339 |
| BsuTUI | ATCGAT | 1 cut(s) | 3303 |
| BtgI | CCRYGG | 2 cut(s) | 1298, 2110 |
| BtgZI | GCGATG | 1 cut(s) | 2119 |
| BtrI | CACGTC | 1 cut(s) | 1120 |
| BtsCI | GGATG | 5 cut(s) | 103, 508, 752, 1893, 2331 |
| BtsI | GCAGTG | 2 cut(s) | 1229, 1642 |
| BtsIMutI | CAGTG | 3 cut(s) | 828, 1229, 1642 |
| BveI | ACCTGC | 3 cut(s) | 480, 644, 1748 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1862 |
| CciI | TCATGA | 3 cut(s) | 39, 774, 3141 |
| CfoI | GCGC | 5 cut(s) | 240, 1156, 1212, 1694, 1861 |
| Cfr42I | CCGCGG | 1 cut(s) | 1301 |
| ClaI | ATCGAT | 1 cut(s) | 3303 |
| CseI | GACGC | 3 cut(s) | 1006, 1435, 1786 |
| CsiI | ACCWGGT | 2 cut(s) | 1093, 2908 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 153, 188 |
| DinI | GGCGCC | 1 cut(s) | 239 |
| DpnI | GATC | 9 cut(s) | 691, 1002, 1038, 1076, 1350, 1876, 2301, 2390, 3633 |
| DpnII | GATC | 9 cut(s) | 689, 1000, 1036, 1074, 1348, 1874, 2299, 2388, 3631 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 922, 1258 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 922, 1258 |
| EaeI | YGGCCR | 2 cut(s) | 1114, 1899 |
| Eam1104I | CTCTTC | 3 cut(s) | 253, 915, 1277 |
| EarI | CTCTTC | 3 cut(s) | 253, 915, 1277 |
| EciI | GGCGGA | 1 cut(s) | 1594 |
| Eco105I | TACGTA | 1 cut(s) | 2680 |
| Eco130I | CCWWGG | 3 cut(s) | 216, 1677, 2087 |
| Eco147I | AGGCCT | 1 cut(s) | 1982 |
| Eco24I | GRGCYC | 2 cut(s) | 1955, 2125 |
| Eco47I | GGWCC | 3 cut(s) | 1260, 1466, 2071 |
| Eco57I | CTGAAG | 2 cut(s) | 852, 1032 |
| Eco72I | CACGTG | 2 cut(s) | 1346, 2606 |
| Eco88I | CYCGRG | 3 cut(s) | 743, 1543, 1660 |
| EcoO109I | RGGNCCY | 1 cut(s) | 2044 |
| EcoRI | GAATTC | 3 cut(s) | 778, 1944, 2870 |
| EcoRII | CCWGG | 8 cut(s) | 462, 1093, 1242, 1896, 2054, 2073, 2908, 3295 |
| EcoT14I | CCWWGG | 3 cut(s) | 216, 1677, 2087 |
| EcoT22I | ATGCAT | 3 cut(s) | 1059, 2365, 3341 |
| EcoT38I | GRGCYC | 2 cut(s) | 1955, 2125 |
| EgeI | GGCGCC | 1 cut(s) | 239 |
| EheI | GGCGCC | 1 cut(s) | 239 |
| ErhI | CCWWGG | 3 cut(s) | 216, 1677, 2087 |
| Esp3I | CGTCTC | 2 cut(s) | 1126, 2184 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 2545, 2577, 2647, 2679 |
| FaqI | GGGAC | 2 cut(s) | 1590, 3262 |
| FauI | CCCGC | 4 cut(s) | 7, 1101, 1746, 1974 |
| FauNDI | CATATG | 1 cut(s) | 206 |
| FbaI | TGATCA | 1 cut(s) | 2388 |
| FblI | GTMKAC | 1 cut(s) | 468 |
| FokI | GGATG | 5 cut(s) | 90, 495, 739, 1880, 2338 |
| FriOI | GRGCYC | 2 cut(s) | 1955, 2125 |
| FspBI | CTAG | 8 cut(s) | 459, 531, 693, 732, 863, 1214, 1413, 2088 |
| GlaI | GCGC | 5 cut(s) | 239, 1155, 1211, 1693, 1860 |
| GsaI | CCCAGC | 2 cut(s) | 1171, 2003 |
| GsuI | CTGGAG | 1 cut(s) | 1217 |
| HaeII | RGCGCY | 2 cut(s) | 241, 1862 |
| HapII | CCGG | 3 cut(s) | 184, 707, 1574 |
| HgaI | GACGC | 3 cut(s) | 1006, 1435, 1786 |
| HhaI | GCGC | 5 cut(s) | 240, 1156, 1212, 1694, 1861 |
| Hin1I | GRCGYC | 3 cut(s) | 238, 1579, 1797 |
| Hin6I | GCGC | 5 cut(s) | 238, 1154, 1210, 1692, 1859 |
| HinP1I | GCGC | 5 cut(s) | 238, 1154, 1210, 1692, 1859 |
| HincII | GTYRAC | 1 cut(s) | 54 |
| HindII | GTYRAC | 1 cut(s) | 54 |
| HindIII | AAGCTT | 4 cut(s) | 965, 2275, 3385, 3403 |
| HinfI | GANTC | 6 cut(s) | 923, 1160, 1397, 1824, 2294, 3308 |
| HpaII | CCGG | 3 cut(s) | 184, 707, 1574 |
| HphI | GGTGA | 8 cut(s) | 962, 1109, 1666, 1733, 2783, 3275, 3427, 3591 |
| Hpy99I | CGWCG | 7 cut(s) | 954, 957, 1459, 1584, 1699, 1802, 3530 |
| HpyCH4III | ACNGT | 6 cut(s) | 763, 805, 950, 2780, 2881, 3186 |
| HpyCH4IV | ACGT | 8 cut(s) | 100, 138, 1119, 1345, 1579, 2207, 2605, 2679 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 732, 1246, 1312, 1898, 1971, 2028, 2129, 3384 |
| HpySE526I | ACGT | 8 cut(s) | 100, 138, 1119, 1345, 1579, 2207, 2605, 2679 |
| Hsp92I | GRCGYC | 3 cut(s) | 238, 1579, 1797 |
| HspAI | GCGC | 5 cut(s) | 238, 1154, 1210, 1692, 1859 |
| KasI | GGCGCC | 1 cut(s) | 237 |
| Ksp22I | TGATCA | 1 cut(s) | 2388 |
| KspI | CCGCGG | 1 cut(s) | 1301 |
| Kzo9I | GATC | 9 cut(s) | 689, 1000, 1036, 1074, 1348, 1874, 2299, 2388, 3631 |
| LguI | GCTCTTC | 1 cut(s) | 1277 |
| LmnI | GCTCC | 4 cut(s) | 274, 1227, 1832, 2128 |
| LweI | GCATC | 7 cut(s) | 1066, 1143, 1656, 2316, 2372, 3309, 3348 |
| MabI | ACCWGGT | 2 cut(s) | 1093, 2908 |
| MaeI | CTAG | 8 cut(s) | 459, 531, 693, 732, 863, 1214, 1413, 2088 |
| MaeII | ACGT | 8 cut(s) | 100, 138, 1119, 1345, 1579, 2207, 2605, 2679 |
| MaeIII | GTNAC | 5 cut(s) | 1593, 2024, 2711, 3238, 3597 |
| MalI | GATC | 9 cut(s) | 691, 1002, 1038, 1076, 1350, 1876, 2301, 2390, 3633 |
| MbiI | CCGCTC | 1 cut(s) | 269 |
| MboI | GATC | 9 cut(s) | 689, 1000, 1036, 1074, 1348, 1874, 2299, 2388, 3631 |
| MflI | RGATCY | 5 cut(s) | 1000, 1074, 1874, 2299, 3631 |
| MhlI | GDGCHC | 6 cut(s) | 374, 1454, 1642, 1661, 1955, 2125 |
| MlsI | TGGCCA | 1 cut(s) | 1116 |
| MluNI | TGGCCA | 1 cut(s) | 1116 |
| Mly113I | GGCGCC | 1 cut(s) | 238 |
| MlyI | GAGTC | 4 cut(s) | 932, 1154, 1833, 3302 |
| MmeI | TCCRAC | 6 cut(s) | 236, 647, 1565, 1780, 1810, 3466 |
| Mox20I | TGGCCA | 1 cut(s) | 1116 |
| Mph1103I | ATGCAT | 3 cut(s) | 1059, 2365, 3341 |
| MroXI | GAANNNNTTC | 4 cut(s) | 714, 782, 2659, 3156 |
| MscI | TGGCCA | 1 cut(s) | 1116 |
| MslI | CAYNNNNRTG | 4 cut(s) | 80, 1652, 1679, 1885 |
| Msp20I | TGGCCA | 1 cut(s) | 1116 |
| MspA1I | CMGCKG | 6 cut(s) | 1171, 1300, 1969, 2031, 2929, 3446 |
| MspCI | CTTAAG | 2 cut(s) | 1741, 2443 |
| MspI | CCGG | 3 cut(s) | 184, 707, 1574 |
| Mva1269I | GAATGC | 2 cut(s) | 661, 1484 |
| MvaI | CCWGG | 8 cut(s) | 464, 1095, 1244, 1898, 2056, 2075, 2910, 3297 |
| MvnI | CGCG | 3 cut(s) | 1300, 1694, 2138 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 732, 1246, 1312, 1898, 1971, 2028, 2129, 3384 |
| NarI | GGCGCC | 1 cut(s) | 238 |
| NciI | CCSGG | 2 cut(s) | 707, 1575 |
| NdeI | CATATG | 1 cut(s) | 206 |
| NdeII | GATC | 9 cut(s) | 689, 1000, 1036, 1074, 1348, 1874, 2299, 2388, 3631 |
| NheI | GCTAGC | 1 cut(s) | 458 |
| NmuCI | GTSAC | 5 cut(s) | 1593, 2024, 2711, 3238, 3597 |
| NsiI | ATGCAT | 3 cut(s) | 1059, 2365, 3341 |
| NspI | RCATGY | 4 cut(s) | 393, 600, 1315, 3107 |
| NspV | TTCGAA | 1 cut(s) | 1621 |
| OliI | CACNNNNGTG | 1 cut(s) | 1679 |
| PaeI | GCATGC | 1 cut(s) | 1315 |
| PaeR7I | CTCGAG | 2 cut(s) | 743, 1660 |
| PagI | TCATGA | 3 cut(s) | 39, 774, 3141 |
| PasI | CCCWGGG | 1 cut(s) | 2055 |
| PceI | AGGCCT | 1 cut(s) | 1982 |
| PciI | ACATGT | 1 cut(s) | 389 |
| PciSI | GCTCTTC | 1 cut(s) | 1277 |
| PctI | GAATGC | 2 cut(s) | 661, 1484 |
| PdmI | GAANNNNTTC | 4 cut(s) | 714, 782, 2659, 3156 |
| PfeI | GAWTC | 2 cut(s) | 1397, 2294 |
| PflMI | CCANNNNNTGG | 3 cut(s) | 1919, 2189, 2322 |
| PleI | GAGTC | 4 cut(s) | 931, 1154, 1832, 3302 |
| PluTI | GGCGCC | 1 cut(s) | 241 |
| PmaCI | CACGTG | 2 cut(s) | 1346, 2606 |
| PmlI | CACGTG | 2 cut(s) | 1346, 2606 |
| PpsI | GAGTC | 4 cut(s) | 931, 1154, 1832, 3302 |
| Ppu21I | YACGTR | 5 cut(s) | 139, 1346, 2208, 2606, 2680 |
| PscI | ACATGT | 1 cut(s) | 389 |
| PshBI | ATTAAT | 2 cut(s) | 3423, 3533 |
| PsiI | TTATAA | 2 cut(s) | 2952, 3327 |
| Psp6I | CCWGG | 8 cut(s) | 462, 1093, 1242, 1896, 2054, 2073, 2908, 3295 |
| PspCI | CACGTG | 2 cut(s) | 1346, 2606 |
| PspFI | CCCAGC | 2 cut(s) | 1167, 1999 |
| PspGI | CCWGG | 8 cut(s) | 462, 1093, 1242, 1896, 2054, 2073, 2908, 3295 |
| PspXI | VCTCGAGB | 1 cut(s) | 1660 |
| PsrI | GAACNNNNNNTAC | 4 cut(s) | 793, 825, 1716, 1748 |
| PstI | CTGCAG | 3 cut(s) | 641, 1767, 2858 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1862 |
| PsuI | RGATCY | 5 cut(s) | 1000, 1074, 1874, 2299, 3631 |
| PvuII | CAGCTG | 3 cut(s) | 1171, 2031, 3446 |
| RseI | CAYNNNNRTG | 4 cut(s) | 80, 1652, 1679, 1885 |
| SacII | CCGCGG | 1 cut(s) | 1301 |
| SapI | GCTCTTC | 1 cut(s) | 1277 |
| Sau3AI | GATC | 9 cut(s) | 689, 1000, 1036, 1074, 1348, 1874, 2299, 2388, 3631 |
| SbfI | CCTGCAGG | 1 cut(s) | 641 |
| ScaI | AGTACT | 2 cut(s) | 749, 3394 |
| SchI | GAGTC | 4 cut(s) | 932, 1154, 1833, 3302 |
| SdaI | CCTGCAGG | 1 cut(s) | 641 |
| SduI | GDGCHC | 6 cut(s) | 374, 1454, 1642, 1661, 1955, 2125 |
| SexAI | ACCWGGT | 2 cut(s) | 1093, 2908 |
| SfaNI | GCATC | 7 cut(s) | 1066, 1143, 1656, 2316, 2372, 3309, 3348 |
| SfcI | CTRYAG | 4 cut(s) | 637, 876, 1763, 2854 |
| SfiI | GGCCNNNNNGGCC | 1 cut(s) | 1898 |
| SfoI | GGCGCC | 1 cut(s) | 239 |
| Sfr274I | CTCGAG | 2 cut(s) | 743, 1660 |
| Sfr303I | CCGCGG | 1 cut(s) | 1301 |
| SfuI | TTCGAA | 1 cut(s) | 1621 |
| SgrBI | CCGCGG | 1 cut(s) | 1301 |
| SinI | GGWCC | 3 cut(s) | 1260, 1466, 2071 |
| SlaI | CTCGAG | 2 cut(s) | 743, 1660 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 80, 1652, 1679, 1885 |
| SmlI | CTYRAG | 5 cut(s) | 743, 1660, 1741, 2147, 2443 |
| SmoI | CTYRAG | 5 cut(s) | 743, 1660, 1741, 2147, 2443 |
| SnaBI | TACGTA | 1 cut(s) | 2680 |
| SphI | GCATGC | 1 cut(s) | 1315 |
| Sse8387I | CCTGCAGG | 1 cut(s) | 641 |
| SseBI | AGGCCT | 1 cut(s) | 1982 |
| SspDI | GGCGCC | 1 cut(s) | 237 |
| SspI | AATATT | 1 cut(s) | 3193 |
| SspMI | CTAG | 8 cut(s) | 459, 531, 693, 732, 863, 1214, 1413, 2088 |
| StuI | AGGCCT | 1 cut(s) | 1982 |
| StyI | CCWWGG | 3 cut(s) | 216, 1677, 2087 |
| TaaI | ACNGT | 6 cut(s) | 763, 805, 950, 2780, 2881, 3186 |
| TaiI | ACGT | 8 cut(s) | 103, 141, 1122, 1348, 1582, 2210, 2608, 2682 |
| TatI | WGTACW | 6 cut(s) | 174, 747, 1526, 1732, 3055, 3392 |
| TfiI | GAWTC | 2 cut(s) | 1397, 2294 |
| TscAI | CASTG | 3 cut(s) | 835, 1229, 1649 |
| TseFI | GTSAC | 5 cut(s) | 1593, 2024, 2711, 3238, 3597 |
| Tsp45I | GTSAC | 5 cut(s) | 1593, 2024, 2711, 3238, 3597 |
| TspGWI | ACGGA | 5 cut(s) | 932, 1142, 2326, 3084, 3514 |
| TspRI | CASTG | 3 cut(s) | 835, 1229, 1649 |
| Van91I | CCANNNNNTGG | 3 cut(s) | 1919, 2189, 2322 |
| Vha464I | CTTAAG | 2 cut(s) | 1741, 2443 |
| VpaK11BI | GGWCC | 3 cut(s) | 1260, 1466, 2071 |
| VspI | ATTAAT | 2 cut(s) | 3423, 3533 |
| XapI | RAATTY | 9 cut(s) | 306, 778, 1944, 2237, 2253, 2331, 2624, 2870, 3145 |
| XbaI | TCTAGA | 1 cut(s) | 692 |
| XceI | RCATGY | 4 cut(s) | 393, 600, 1315, 3107 |
| XcmI | CCANNNNNNNNNTGG | 3 cut(s) | 513, 1101, 3293 |
| XhoI | CTCGAG | 2 cut(s) | 743, 1660 |
| XmaJI | CCTAGG | 1 cut(s) | 2087 |
| XmiI | GTMKAC | 1 cut(s) | 468 |
| XmnI | GAANNNNTTC | 4 cut(s) | 714, 782, 2659, 3156 |
| XspI | CTAG | 8 cut(s) | 459, 531, 693, 732, 863, 1214, 1413, 2088 |
| ZraI | GACGTC | 1 cut(s) | 1580 |
| ZrmI | AGTACT | 2 cut(s) | 749, 3394 |
| Zsp2I | ATGCAT | 3 cut(s) | 1059, 2365, 3341 |