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| Species | Orthologous Gene IDs |
|---|---|
| pyrus_communis | pycom01g02010 pycom01g05050 pycom01g06360 pycom01g19880 pycom02g18830 pycom02g18850 pycom03g01690 pycom03g01700 pycom1146g00070 pycom11g21810 pycom13g16900 pycom13g21090 pycom13g26460 pycom15g08640 pycom520g00260 pycom520g01180 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 2100, 2202 |
| AatII | GACGTC | 1 cut(s) | 1975 |
| Acc36I | ACCTGC | 1 cut(s) | 2874 |
| AccB1I | GGYRCC | 2 cut(s) | 327, 2060 |
| AccBSI | CCGCTC | 1 cut(s) | 269 |
| AccI | GTMKAC | 1 cut(s) | 1969 |
| AciI | CCGC | 4 cut(s) | 267, 640, 2024, 2039 |
| AclWI | GGATC | 7 cut(s) | 285, 779, 1237, 1343, 1356, 2833, 3095 |
| AcuI | CTGAAG | 2 cut(s) | 450, 543 |
| AcvI | CACGTG | 4 cut(s) | 867, 1431, 1465, 1999 |
| AcyI | GRCGYC | 1 cut(s) | 1972 |
| AdeI | CACNNNGTG | 1 cut(s) | 2161 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 428, 1052, 1249, 1777, 2002, 2028, 2039 |
| AflIII | ACRYGT | 7 cut(s) | 1088, 1428, 1430, 1462, 1464, 1998, 2329 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 1938 |
| AhlI | ACTAGT | 2 cut(s) | 2107, 2282 |
| AjnI | CCWGG | 5 cut(s) | 427, 1152, 2027, 2571, 2723 |
| Alw21I | GWGCWC | 2 cut(s) | 172, 1284 |
| Alw26I | GTCTC | 8 cut(s) | 255, 949, 1025, 1177, 1404, 1596, 2417, 3346 |
| AlwI | GGATC | 7 cut(s) | 285, 779, 1237, 1343, 1356, 2833, 3095 |
| Ama87I | CYCGRG | 1 cut(s) | 280 |
| AoxI | GGCC | 4 cut(s) | 1445, 1993, 2019, 2030 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1844, 1876 |
| AseI | ATTAAT | 1 cut(s) | 2130 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 491 |
| AspLEI | GCGC | 4 cut(s) | 1425, 1896, 1906, 2871 |
| AspS9I | GGNCC | 5 cut(s) | 527, 1301, 1993, 2020, 2564 |
| AsuC2I | CCSGG | 2 cut(s) | 416, 2057 |
| AsuHPI | GGTGA | 5 cut(s) | 994, 1567, 2089, 2678, 3074 |
| AsuII | TTCGAA | 2 cut(s) | 2209, 3332 |
| AsuNHI | GCTAGC | 1 cut(s) | 689 |
| AvaI | CYCGRG | 1 cut(s) | 280 |
| AvaII | GGWCC | 3 cut(s) | 527, 1301, 2564 |
| BaeGI | GKGCMC | 1 cut(s) | 2063 |
| BamHI | GGATCC | 1 cut(s) | 1348 |
| BanI | GGYRCC | 2 cut(s) | 327, 2060 |
| BbrPI | CACGTG | 4 cut(s) | 867, 1431, 1465, 1999 |
| Bbv12I | GWGCWC | 2 cut(s) | 172, 1284 |
| BccI | CCATC | 6 cut(s) | 646, 735, 2697, 2974, 2998, 3045 |
| BceAI | ACGGC | 2 cut(s) | 2600, 2644 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 682, 716 |
| BciT130I | CCWGG | 5 cut(s) | 429, 1154, 2029, 2573, 2725 |
| BciVI | GTATCC | 3 cut(s) | 58, 364, 766 |
| BcnI | CCSGG | 2 cut(s) | 416, 2057 |
| BcoDI | GTCTC | 8 cut(s) | 255, 949, 1025, 1177, 1404, 1596, 2417, 3346 |
| BcuI | ACTAGT | 2 cut(s) | 2107, 2282 |
| BfmI | CTRYAG | 1 cut(s) | 1050 |
| BfoI | RGCGCY | 1 cut(s) | 1897 |
| BfuAI | ACCTGC | 1 cut(s) | 2874 |
| BfuI | GTATCC | 3 cut(s) | 58, 364, 766 |
| BglII | AGATCT | 1 cut(s) | 1016 |
| BmcAI | AGTACT | 2 cut(s) | 458, 1844 |
| Bme1390I | CCNGG | 7 cut(s) | 416, 429, 1154, 2029, 2057, 2573, 2725 |
| Bme18I | GGWCC | 3 cut(s) | 527, 1301, 2564 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 1938 |
| BmeT110I | CYCGRG | 1 cut(s) | 280 |
| BmgT120I | GGNCC | 5 cut(s) | 527, 1301, 1993, 2020, 2564 |
| BmiI | GGNNCC | 9 cut(s) | 329, 420, 638, 1350, 1994, 2022, 2062, 2602, 2864 |
| BmrFI | CCNGG | 7 cut(s) | 416, 429, 1154, 2029, 2057, 2573, 2725 |
| BmrI | ACTGGG | 2 cut(s) | 817, 1950 |
| BmsI | GCATC | 3 cut(s) | 702, 1332, 1704 |
| BmtI | GCTAGC | 1 cut(s) | 693 |
| BmuI | ACTGGG | 2 cut(s) | 817, 1950 |
| BoxI | GACNNNNGTC | 1 cut(s) | 1397 |
| BplI | GAGNNNNNCTC | 6 cut(s) | 1244, 1276, 1349, 1381, 2942, 2974 |
| Bpu14I | TTCGAA | 2 cut(s) | 2209, 3332 |
| BpuEI | CTTGAG | 4 cut(s) | 1250, 2927, 2969, 3181 |
| BpuMI | CCSGG | 2 cut(s) | 416, 2057 |
| Bsa29I | ATCGAT | 1 cut(s) | 774 |
| BsaAI | YACGTR | 7 cut(s) | 867, 1431, 1465, 1564, 1914, 1999, 2330 |
| BsaHI | GRCGYC | 1 cut(s) | 1972 |
| BsaI | GGTCTC | 2 cut(s) | 1177, 1404 |
| BsaJI | CCNNGG | 6 cut(s) | 60, 173, 1248, 2027, 2056, 2571 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 428, 1052, 1249, 1777, 2002, 2028, 2039 |
| Bse118I | RCCGGY | 1 cut(s) | 2871 |
| Bse1I | ACTGG | 4 cut(s) | 823, 1303, 1956, 3037 |
| Bse3DI | GCAATG | 1 cut(s) | 444 |
| BseBI | CCWGG | 5 cut(s) | 429, 1154, 2029, 2573, 2725 |
| BseCI | ATCGAT | 1 cut(s) | 774 |
| BseDI | CCNNGG | 6 cut(s) | 60, 173, 1248, 2027, 2056, 2571 |
| BseGI | GGATG | 5 cut(s) | 727, 876, 2052, 2990, 3056 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 428, 1052, 1249, 1777, 2002, 2028, 2039 |
| BseMI | GCAATG | 1 cut(s) | 444 |
| BseMII | CTCAG | 5 cut(s) | 209, 262, 326, 1041, 1310 |
| BseNI | ACTGG | 4 cut(s) | 823, 1303, 1956, 3037 |
| BseRI | GAGGAG | 3 cut(s) | 1011, 2150, 2947 |
| BseSI | GKGCMC | 1 cut(s) | 2063 |
| BsgI | GTGCAG | 1 cut(s) | 1872 |
| BshFI | GGCC | 4 cut(s) | 1447, 1995, 2021, 2032 |
| BshNI | GGYRCC | 2 cut(s) | 327, 2060 |
| BshVI | ATCGAT | 1 cut(s) | 774 |
| BsiHKAI | GWGCWC | 2 cut(s) | 172, 1284 |
| BsiHKCI | CYCGRG | 1 cut(s) | 280 |
| BsiSI | CCGG | 4 cut(s) | 416, 2056, 2860, 2872 |
| BslFI | GGGAC | 4 cut(s) | 1054, 1225, 1938, 2806 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 428, 1052, 1249, 1777, 2002, 2028, 2039 |
| BsmAI | GTCTC | 8 cut(s) | 255, 949, 1025, 1177, 1404, 1596, 2417, 3346 |
| BsmFI | GGGAC | 4 cut(s) | 1054, 1225, 1938, 2806 |
| BsmI | GAATGC | 1 cut(s) | 2631 |
| BsnI | GGCC | 4 cut(s) | 1447, 1995, 2021, 2032 |
| Bso31I | GGTCTC | 2 cut(s) | 1177, 1404 |
| BsoBI | CYCGRG | 1 cut(s) | 280 |
| Bsp119I | TTCGAA | 2 cut(s) | 2209, 3332 |
| Bsp1286I | GDGCHC | 3 cut(s) | 172, 1284, 2063 |
| Bsp1407I | TGTACA | 1 cut(s) | 1864 |
| BspACI | CCGC | 4 cut(s) | 267, 640, 2024, 2039 |
| BspANI | GGCC | 4 cut(s) | 1447, 1995, 2021, 2032 |
| BspCNI | CTCAG | 5 cut(s) | 210, 261, 325, 1040, 1311 |
| BspDI | ATCGAT | 1 cut(s) | 774 |
| BspHI | TCATGA | 1 cut(s) | 2451 |
| BspLI | GGNNCC | 9 cut(s) | 329, 420, 638, 1350, 1994, 2022, 2062, 2602, 2864 |
| BspMI | ACCTGC | 1 cut(s) | 2874 |
| BspOI | GCTAGC | 1 cut(s) | 693 |
| BspPI | GGATC | 7 cut(s) | 285, 779, 1237, 1343, 1356, 2833, 3095 |
| BspQI | GCTCTTC | 1 cut(s) | 1524 |
| BspT104I | TTCGAA | 2 cut(s) | 2209, 3332 |
| BspT107I | GGYRCC | 2 cut(s) | 327, 2060 |
| BspTNI | GGTCTC | 2 cut(s) | 1177, 1404 |
| BsrBI | CCGCTC | 1 cut(s) | 269 |
| BsrDI | GCAATG | 1 cut(s) | 444 |
| BsrFI | RCCGGY | 1 cut(s) | 2871 |
| BsrGI | TGTACA | 1 cut(s) | 1864 |
| BsrI | ACTGG | 4 cut(s) | 823, 1303, 1956, 3037 |
| BssAI | RCCGGY | 1 cut(s) | 2871 |
| BssECI | CCNNGG | 6 cut(s) | 60, 173, 1248, 2027, 2056, 2571 |
| BssNI | GRCGYC | 1 cut(s) | 1972 |
| BssT1I | CCWWGG | 1 cut(s) | 1248 |
| Bst2UI | CCWGG | 5 cut(s) | 429, 1154, 2029, 2573, 2725 |
| Bst4CI | ACNGT | 6 cut(s) | 514, 1286, 1342, 1740, 1940, 2605 |
| Bst6I | CTCTTC | 5 cut(s) | 253, 317, 651, 1175, 1524 |
| BstACI | GRCGYC | 1 cut(s) | 1972 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 546 |
| BstAUI | TGTACA | 1 cut(s) | 1864 |
| BstBAI | YACGTR | 7 cut(s) | 867, 1431, 1465, 1564, 1914, 1999, 2330 |
| BstBI | TTCGAA | 2 cut(s) | 2209, 3332 |
| BstDSI | CCRYGG | 1 cut(s) | 173 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1050 |
| BstF5I | GGATG | 5 cut(s) | 727, 876, 2052, 2990, 3056 |
| BstH2I | RGCGCY | 1 cut(s) | 1897 |
| BstHHI | GCGC | 4 cut(s) | 1425, 1896, 1906, 2871 |
| BstMAI | GTCTC | 8 cut(s) | 255, 949, 1025, 1177, 1404, 1596, 2417, 3346 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 441, 546, 1923, 2023, 2045 |
| BstNI | CCWGG | 5 cut(s) | 429, 1154, 2029, 2573, 2725 |
| BstNSI | RCATGY | 5 cut(s) | 1092, 1609, 1794, 2227, 2985 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 1397 |
| BstSCI | CCNGG | 7 cut(s) | 414, 427, 1152, 2027, 2055, 2571, 2723 |
| BstSFI | CTRYAG | 1 cut(s) | 1050 |
| BstSLI | GKGCMC | 1 cut(s) | 2063 |
| BstSNI | TACGTA | 1 cut(s) | 1564 |
| BstX2I | RGATCY | 5 cut(s) | 290, 1016, 1229, 1348, 3087 |
| BstYI | RGATCY | 5 cut(s) | 290, 1016, 1229, 1348, 3087 |
| Bsu15I | ATCGAT | 1 cut(s) | 774 |
| BsuI | GTATCC | 3 cut(s) | 58, 364, 766 |
| BsuRI | GGCC | 4 cut(s) | 1447, 1995, 2021, 2032 |
| BsuTUI | ATCGAT | 1 cut(s) | 774 |
| BtgI | CCRYGG | 1 cut(s) | 173 |
| BtsCI | GGATG | 5 cut(s) | 727, 876, 2052, 2990, 3056 |
| BtsIMutI | CAGTG | 2 cut(s) | 1282, 1936 |
| BveI | ACCTGC | 1 cut(s) | 2874 |
| CciI | TCATGA | 1 cut(s) | 2451 |
| CfoI | GCGC | 4 cut(s) | 1425, 1896, 1906, 2871 |
| Cfr10I | RCCGGY | 1 cut(s) | 2871 |
| Cfr13I | GGNCC | 5 cut(s) | 527, 1301, 1993, 2020, 2564 |
| ClaI | ATCGAT | 1 cut(s) | 774 |
| CseI | GACGC | 3 cut(s) | 631, 1115, 1867 |
| DraI | TTTAAA | 5 cut(s) | 535, 2125, 2880, 3141, 3256 |
| DraIII | CACNNNGTG | 1 cut(s) | 2161 |
| DriI | GACNNNNNGTC | 1 cut(s) | 1938 |
| Eam1104I | CTCTTC | 5 cut(s) | 253, 317, 651, 1175, 1524 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 1938 |
| EarI | CTCTTC | 5 cut(s) | 253, 317, 651, 1175, 1524 |
| Eco105I | TACGTA | 1 cut(s) | 1564 |
| Eco130I | CCWWGG | 1 cut(s) | 1248 |
| Eco147I | AGGCCT | 1 cut(s) | 2032 |
| Eco31I | GGTCTC | 2 cut(s) | 1177, 1404 |
| Eco32I | GATATC | 4 cut(s) | 1146, 1405, 1439, 2928 |
| Eco47I | GGWCC | 3 cut(s) | 527, 1301, 2564 |
| Eco57I | CTGAAG | 2 cut(s) | 450, 543 |
| Eco72I | CACGTG | 4 cut(s) | 867, 1431, 1465, 1999 |
| Eco88I | CYCGRG | 1 cut(s) | 280 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1050 |
| EcoO109I | RGGNCCY | 1 cut(s) | 2020 |
| EcoRI | GAATTC | 3 cut(s) | 487, 2697, 2932 |
| EcoRII | CCWGG | 5 cut(s) | 427, 1152, 2027, 2571, 2723 |
| EcoRV | GATATC | 4 cut(s) | 1146, 1405, 1439, 2928 |
| EcoT14I | CCWWGG | 1 cut(s) | 1248 |
| EcoT22I | ATGCAT | 1 cut(s) | 2225 |
| ErhI | CCWWGG | 1 cut(s) | 1248 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 667, 699, 1518, 1550 |
| FaqI | GGGAC | 4 cut(s) | 1054, 1225, 1938, 2806 |
| FauI | CCCGC | 2 cut(s) | 2031, 2032 |
| FauNDI | CATATG | 1 cut(s) | 2797 |
| FblI | GTMKAC | 1 cut(s) | 1969 |
| FokI | GGATG | 5 cut(s) | 714, 863, 2039, 2977, 3063 |
| GlaI | GCGC | 4 cut(s) | 1424, 1895, 1905, 2870 |
| HaeII | RGCGCY | 1 cut(s) | 1897 |
| HaeIII | GGCC | 4 cut(s) | 1447, 1995, 2021, 2032 |
| HapII | CCGG | 4 cut(s) | 416, 2056, 2860, 2872 |
| HgaI | GACGC | 3 cut(s) | 631, 1115, 1867 |
| HhaI | GCGC | 4 cut(s) | 1425, 1896, 1906, 2871 |
| Hin1I | GRCGYC | 1 cut(s) | 1972 |
| Hin6I | GCGC | 4 cut(s) | 1423, 1894, 1904, 2869 |
| HinP1I | GCGC | 4 cut(s) | 1423, 1894, 1904, 2869 |
| HincII | GTYRAC | 3 cut(s) | 160, 1130, 1331 |
| HindII | GTYRAC | 3 cut(s) | 160, 1130, 1331 |
| HindIII | AAGCTT | 1 cut(s) | 2945 |
| HpaII | CCGG | 4 cut(s) | 416, 2056, 2860, 2872 |
| HphI | GGTGA | 5 cut(s) | 994, 1567, 2089, 2678, 3074 |
| Hpy166II | GTNNAC | 7 cut(s) | 160, 1130, 1331, 1558, 1743, 1970, 2686 |
| Hpy8I | GTNNAC | 7 cut(s) | 160, 1130, 1331, 1558, 1743, 1970, 2686 |
| Hpy99I | CGWCG | 6 cut(s) | 597, 625, 701, 704, 1977, 2609 |
| HpyAV | CCTTC | 9 cut(s) | 502, 518, 577, 959, 1593, 1636, 2507, 2971, 3020 |
| HpyCH4III | ACNGT | 6 cut(s) | 514, 1286, 1342, 1740, 1940, 2605 |
| HpyCH4IV | ACGT | 8 cut(s) | 866, 1430, 1464, 1563, 1913, 1972, 1998, 2329 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 441, 546, 1923, 2023, 2045 |
| HpySE526I | ACGT | 8 cut(s) | 866, 1430, 1464, 1563, 1913, 1972, 1998, 2329 |
| Hsp92I | GRCGYC | 1 cut(s) | 1972 |
| HspAI | GCGC | 4 cut(s) | 1423, 1894, 1904, 2869 |
| KroI | GCCGGC | 1 cut(s) | 2871 |
| KroNI | GCCGGC | 1 cut(s) | 2873 |
| LguI | GCTCTTC | 1 cut(s) | 1524 |
| LmnI | GCTCC | 5 cut(s) | 43, 175, 1252, 1279, 3224 |
| LweI | GCATC | 3 cut(s) | 702, 1332, 1704 |
| MaeII | ACGT | 8 cut(s) | 866, 1430, 1464, 1563, 1913, 1972, 1998, 2329 |
| MaeIII | GTNAC | 5 cut(s) | 481, 881, 1645, 1879, 3160 |
| MbiI | CCGCTC | 1 cut(s) | 269 |
| MflI | RGATCY | 5 cut(s) | 290, 1016, 1229, 1348, 3087 |
| MhlI | GDGCHC | 3 cut(s) | 172, 1284, 2063 |
| MlyI | GAGTC | 4 cut(s) | 668, 1036, 2380, 2837 |
| MmeI | TCCRAC | 4 cut(s) | 1392, 1985, 3182, 3332 |
| Mph1103I | ATGCAT | 1 cut(s) | 2225 |
| MroNI | GCCGGC | 1 cut(s) | 2871 |
| MroXI | GAANNNNTTC | 1 cut(s) | 491 |
| MslI | CAYNNNNRTG | 4 cut(s) | 33, 535, 1604, 1620 |
| MspA1I | CMGCKG | 1 cut(s) | 470 |
| MspI | CCGG | 4 cut(s) | 416, 2056, 2860, 2872 |
| MspR9I | CCNGG | 7 cut(s) | 416, 429, 1154, 2029, 2057, 2573, 2725 |
| Mva1269I | GAATGC | 1 cut(s) | 2631 |
| MvaI | CCWGG | 5 cut(s) | 429, 1154, 2029, 2573, 2725 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 441, 546, 1923, 2023, 2045 |
| NaeI | GCCGGC | 1 cut(s) | 2873 |
| NciI | CCSGG | 2 cut(s) | 416, 2057 |
| NdeI | CATATG | 1 cut(s) | 2797 |
| NgoMIV | GCCGGC | 1 cut(s) | 2871 |
| NheI | GCTAGC | 1 cut(s) | 689 |
| NlaIV | GGNNCC | 9 cut(s) | 329, 420, 638, 1350, 1994, 2022, 2062, 2602, 2864 |
| NmuCI | GTSAC | 2 cut(s) | 1645, 1879 |
| NsiI | ATGCAT | 1 cut(s) | 2225 |
| NspI | RCATGY | 5 cut(s) | 1092, 1609, 1794, 2227, 2985 |
| NspV | TTCGAA | 2 cut(s) | 2209, 3332 |
| PaeI | GCATGC | 1 cut(s) | 2227 |
| PaeR7I | CTCGAG | 1 cut(s) | 280 |
| PagI | TCATGA | 1 cut(s) | 2451 |
| PceI | AGGCCT | 1 cut(s) | 2032 |
| PciI | ACATGT | 1 cut(s) | 1088 |
| PciSI | GCTCTTC | 1 cut(s) | 1524 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 2004, 2613 |
| PctI | GAATGC | 1 cut(s) | 2631 |
| PdiI | GCCGGC | 1 cut(s) | 2873 |
| PdmI | GAANNNNTTC | 1 cut(s) | 491 |
| PfeI | GAWTC | 6 cut(s) | 276, 873, 1767, 3000, 3017, 3334 |
| PfoI | TCCNGGA | 1 cut(s) | 1152 |
| PleI | GAGTC | 4 cut(s) | 667, 1036, 2380, 2837 |
| PmaCI | CACGTG | 4 cut(s) | 867, 1431, 1465, 1999 |
| PmlI | CACGTG | 4 cut(s) | 867, 1431, 1465, 1999 |
| PpsI | GAGTC | 4 cut(s) | 667, 1036, 2380, 2837 |
| Ppu21I | YACGTR | 7 cut(s) | 867, 1431, 1465, 1564, 1914, 1999, 2330 |
| PscI | ACATGT | 1 cut(s) | 1088 |
| PshAI | GACNNNNGTC | 1 cut(s) | 1397 |
| PshBI | ATTAAT | 1 cut(s) | 2130 |
| PsiI | TTATAA | 2 cut(s) | 2100, 2202 |
| Psp6I | CCWGG | 5 cut(s) | 427, 1152, 2027, 2571, 2723 |
| PspCI | CACGTG | 4 cut(s) | 867, 1431, 1465, 1999 |
| PspGI | CCWGG | 5 cut(s) | 427, 1152, 2027, 2571, 2723 |
| PspN4I | GGNNCC | 9 cut(s) | 329, 420, 638, 1350, 1994, 2022, 2062, 2602, 2864 |
| PspPI | GGNCC | 5 cut(s) | 527, 1301, 1993, 2020, 2564 |
| PsuI | RGATCY | 5 cut(s) | 290, 1016, 1229, 1348, 3087 |
| PvuII | CAGCTG | 1 cut(s) | 470 |
| RseI | CAYNNNNRTG | 4 cut(s) | 33, 535, 1604, 1620 |
| SapI | GCTCTTC | 1 cut(s) | 1524 |
| Sau96I | GGNCC | 5 cut(s) | 527, 1301, 1993, 2020, 2564 |
| ScaI | AGTACT | 2 cut(s) | 458, 1844 |
| SchI | GAGTC | 4 cut(s) | 668, 1036, 2380, 2837 |
| ScrFI | CCNGG | 7 cut(s) | 416, 429, 1154, 2029, 2057, 2573, 2725 |
| SduI | GDGCHC | 3 cut(s) | 172, 1284, 2063 |
| SfaNI | GCATC | 3 cut(s) | 702, 1332, 1704 |
| SfcI | CTRYAG | 1 cut(s) | 1050 |
| Sfr274I | CTCGAG | 1 cut(s) | 280 |
| SfuI | TTCGAA | 2 cut(s) | 2209, 3332 |
| SinI | GGWCC | 3 cut(s) | 527, 1301, 2564 |
| SlaI | CTCGAG | 1 cut(s) | 280 |
| SmiI | ATTTAAAT | 2 cut(s) | 535, 3141 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 33, 535, 1604, 1620 |
| SmlI | CTYRAG | 5 cut(s) | 280, 1265, 2942, 2948, 3196 |
| SmoI | CTYRAG | 5 cut(s) | 280, 1265, 2942, 2948, 3196 |
| SnaBI | TACGTA | 1 cut(s) | 1564 |
| SpeI | ACTAGT | 2 cut(s) | 2107, 2282 |
| SphI | GCATGC | 1 cut(s) | 2227 |
| SseBI | AGGCCT | 1 cut(s) | 2032 |
| SsiI | CCGC | 4 cut(s) | 267, 640, 2024, 2039 |
| SspI | AATATT | 2 cut(s) | 2325, 2396 |
| StuI | AGGCCT | 1 cut(s) | 2032 |
| StyD4I | CCNGG | 7 cut(s) | 414, 427, 1152, 2027, 2055, 2571, 2723 |
| StyI | CCWWGG | 1 cut(s) | 1248 |
| SwaI | ATTTAAAT | 2 cut(s) | 535, 3141 |
| TaaI | ACNGT | 6 cut(s) | 514, 1286, 1342, 1740, 1940, 2605 |
| TaiI | ACGT | 8 cut(s) | 869, 1433, 1467, 1566, 1916, 1975, 2001, 2332 |
| TaqII | GACCGA | 2 cut(s) | 1316, 2581 |
| TatI | WGTACW | 7 cut(s) | 456, 853, 1498, 1669, 1783, 1842, 1864 |
| TfiI | GAWTC | 6 cut(s) | 276, 873, 1767, 3000, 3017, 3334 |
| TscAI | CASTG | 2 cut(s) | 1289, 1943 |
| TseFI | GTSAC | 2 cut(s) | 1645, 1879 |
| Tsp45I | GTSAC | 2 cut(s) | 1645, 1879 |
| TspDTI | ATGAA | 8 cut(s) | 45, 865, 897, 1118, 2347, 2351, 2631, 2864 |
| TspGWI | ACGGA | 4 cut(s) | 162, 809, 869, 2765 |
| TspRI | CASTG | 2 cut(s) | 1289, 1943 |
| VpaK11BI | GGWCC | 3 cut(s) | 527, 1301, 2564 |
| VspI | ATTAAT | 1 cut(s) | 2130 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1050 |
| XceI | RCATGY | 5 cut(s) | 1092, 1609, 1794, 2227, 2985 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 3044 |
| XhoI | CTCGAG | 1 cut(s) | 280 |
| XmiI | GTMKAC | 1 cut(s) | 1969 |
| XmnI | GAANNNNTTC | 1 cut(s) | 491 |
| ZraI | GACGTC | 1 cut(s) | 1973 |
| ZrmI | AGTACT | 2 cut(s) | 458, 1844 |
| Zsp2I | ATGCAT | 1 cut(s) | 2225 |