Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0015716

Physical Location & Seq

Genomic Coordinates Forward (+)

1239083 .. 1239814

Gene Structure 732 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g01690.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

ATGCAAGATGTCGAGGAGTTCAAAACAGAACTGAATGTAATTAGTCAGACGCATCAAAAGAATCTGGTTCGTCTTTTCGGATATTGTGACAAGGGGCAACAAAGATCACTAGTTTATGAGTTCATGAGCAATGGAACATTGGCAAGCTTTCTTTTTGCTGATATCAAACCAAGTTGGAGACAGCGAATTGAAATCACTTGTGGCGTTGCTAAAGGGCTTTTGTACTTGTCAATAGAAAGGATCATAATTCTTCGCCCTCTCTACAAAGAACTCTACAAAGAACATGAGGGAGTAGAGAGGGCACTTAAGCAAACGCATAGTCGCGGGGCTATGGTTTCTTGCATACATAAACAGTTAGTAACTAAAAATAGATTGATTATAAATAGGAAACTGTTGAAAATGAGTCACACACTGATGGGAGGAGAGACCATGTATGAGTTTATAAGAGGTTGGGCTATTCCCATATTGCCAATTGGTTTTATAGTGGAACCTCAACTTTCTTCATGGTATCAGAGCAAGTTGTCCCACGTGCGAAGCCAAACGGCCACACACGCTCCATATCACCCCGTTGTGTTGTTCACGTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

196

Amino Acids

22.6

Weight (kDa)

9.49

Isoelectric Point (pI)

45.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	3 - 82	7.2e-12	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	5 - 82	8e-06	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0015716)

Species	Orthologous Gene IDs
pyrus_communis	pycom01g02010 pycom01g05050 pycom01g06360 pycom01g19880 pycom02g18830 pycom02g18850 pycom03g01690 pycom03g01700 pycom1146g00070 pycom11g21810 pycom13g16900 pycom13g21090 pycom13g26460 pycom15g08640 pycom520g00260 pycom520g01180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	380, 443
AccII	CGCG	1 cut(s)	324
AciI	CCGC	1 cut(s)	324
AclWI	GGATC	1 cut(s)	248
AcoI	YGGCCR	1 cut(s)	543
AcvI	CACGTG	2 cut(s)	529, 582
AfaI	GTAC	1 cut(s)	224
AflII	CTTAAG	1 cut(s)	305
AflIII	ACRYGT	1 cut(s)	581
AgsI	TTSAA	3 cut(s)	22, 191, 397
AhlI	ACTAGT	1 cut(s)	109
AluBI	AGCT	1 cut(s)	147
AluI	AGCT	1 cut(s)	147
Alw26I	GTCTC	2 cut(s)	172, 419
AlwI	GGATC	1 cut(s)	248
AoxI	GGCC	1 cut(s)	543
ArsI	GACNNNNNNTTYG	2 cut(s)	304, 336
AsuHPI	GGTGA	1 cut(s)	554
BaeGI	GKGCMC	1 cut(s)	304
BbrPI	CACGTG	2 cut(s)	529, 582
BccI	CCATC	1 cut(s)	409
BceAI	ACGGC	1 cut(s)	558
BcoDI	GTCTC	2 cut(s)	172, 419
BcuI	ACTAGT	1 cut(s)	109
BfaI	CTAG	1 cut(s)	110
BfrI	CTTAAG	1 cut(s)	305
BmiI	GGNNCC	1 cut(s)	489
BmsI	GCATC	1 cut(s)	61
BsaAI	YACGTR	2 cut(s)	529, 582
BsaI	GGTCTC	1 cut(s)	419
BsaXI	ACNNNNNCTCC	2 cut(s)	538, 568
Bse3DI	GCAATG	1 cut(s)	136
BseMI	GCAATG	1 cut(s)	136
BseRI	GAGGAG	2 cut(s)	29, 435
BseSI	GKGCMC	1 cut(s)	304
Bsh1236I	CGCG	1 cut(s)	324
BshFI	GGCC	1 cut(s)	545
BslFI	GGGAC	1 cut(s)	508
BsmAI	GTCTC	2 cut(s)	172, 419
BsmFI	GGGAC	1 cut(s)	508
BsnI	GGCC	1 cut(s)	545
Bso31I	GGTCTC	1 cut(s)	419
Bsp1286I	GDGCHC	1 cut(s)	304
Bsp143I	GATC	2 cut(s)	104, 240
BspACI	CCGC	1 cut(s)	324
BspANI	GGCC	1 cut(s)	545
BspFNI	CGCG	1 cut(s)	324
BspHI	TCATGA	1 cut(s)	123
BspLI	GGNNCC	1 cut(s)	489
BspPI	GGATC	1 cut(s)	248
BspTI	CTTAAG	1 cut(s)	305
BspTNI	GGTCTC	1 cut(s)	419
BsrDI	GCAATG	1 cut(s)	136
BssMI	GATC	2 cut(s)	104, 240
Bst4CI	ACNGT	2 cut(s)	354, 393
BstAFI	CTTAAG	1 cut(s)	305
BstBAI	YACGTR	2 cut(s)	529, 582
BstC8I	GCNNGC	1 cut(s)	145
BstFNI	CGCG	1 cut(s)	324
BstKTI	GATC	2 cut(s)	107, 243
BstMAI	GTCTC	2 cut(s)	172, 419
BstMBI	GATC	2 cut(s)	104, 240
BstMWI	GCNNNNNNNGC	1 cut(s)	551
BstSLI	GKGCMC	1 cut(s)	304
BstUI	CGCG	1 cut(s)	324
BsuRI	GGCC	1 cut(s)	545
BtsIMutI	CAGTG	1 cut(s)	410
Cac8I	GCNNGC	1 cut(s)	145
CciI	TCATGA	1 cut(s)	123
CseI	GACGC	1 cut(s)	58
Csp6I	GTAC	1 cut(s)	223
CviAII	CATG	4 cut(s)	124, 284, 430, 504
CviJI	RGCY	6 cut(s)	147, 217, 329, 455, 537, 545
CviKI_1	RGCY	6 cut(s)	147, 217, 329, 455, 537, 545
CviQI	GTAC	1 cut(s)	223
DpnI	GATC	2 cut(s)	106, 242
DpnII	GATC	2 cut(s)	104, 240
EaeI	YGGCCR	1 cut(s)	543
Eco31I	GGTCTC	1 cut(s)	419
Eco32I	GATATC	1 cut(s)	163
Eco72I	CACGTG	2 cut(s)	529, 582
EcoRV	GATATC	1 cut(s)	163
FaeI	CATG	4 cut(s)	127, 287, 433, 507
FaqI	GGGAC	1 cut(s)	508
FatI	CATG	4 cut(s)	123, 283, 429, 503
FauI	CCCGC	1 cut(s)	317
FspBI	CTAG	1 cut(s)	110
HaeIII	GGCC	1 cut(s)	545
HgaI	GACGC	1 cut(s)	58
Hin1II	CATG	4 cut(s)	127, 287, 433, 507
HindIII	AAGCTT	1 cut(s)	145
HinfI	GANTC	2 cut(s)	61, 403
HphI	GGTGA	1 cut(s)	554
Hpy166II	GTNNAC	1 cut(s)	579
Hpy188I	TCNGA	3 cut(s)	48, 80, 513
Hpy188III	TCNNGA	1 cut(s)	124
Hpy8I	GTNNAC	1 cut(s)	579
HpyCH4III	ACNGT	2 cut(s)	354, 393
HpyCH4IV	ACGT	2 cut(s)	528, 581
HpyCH4V	TGCA	2 cut(s)	4, 342
HpyF10VI	GCNNNNNNNGC	1 cut(s)	551
HpySE526I	ACGT	2 cut(s)	528, 581
Hsp92II	CATG	4 cut(s)	127, 287, 433, 507
Kzo9I	GATC	2 cut(s)	104, 240
LmnI	GCTCC	1 cut(s)	559
LpnPI	CCDG	1 cut(s)	50
LweI	GCATC	1 cut(s)	61
MaeI	CTAG	1 cut(s)	110
MaeII	ACGT	2 cut(s)	528, 581
MaeIII	GTNAC	3 cut(s)	86, 358, 404
MalI	GATC	2 cut(s)	106, 242
MboI	GATC	2 cut(s)	104, 240
MboII	GAAGA	2 cut(s)	242, 492
MfeI	CAATTG	1 cut(s)	471
MhlI	GDGCHC	1 cut(s)	304
MluCI	AATT	4 cut(s)	39, 186, 246, 471
MlyI	GAGTC	1 cut(s)	412
MmeI	TCCRAC	1 cut(s)	155
MnlI	CCTC	7 cut(s)	7, 267, 280, 291, 413, 440, 501
MseI	TTAA	2 cut(s)	306, 586
MslI	CAYNNNNRTG	1 cut(s)	413
MspCI	CTTAAG	1 cut(s)	305
MunI	CAATTG	1 cut(s)	471
MvnI	CGCG	1 cut(s)	324
MwoI	GCNNNNNNNGC	1 cut(s)	551
NdeII	GATC	2 cut(s)	104, 240
NlaIII	CATG	4 cut(s)	127, 287, 433, 507
NlaIV	GGNNCC	1 cut(s)	489
NmuCI	GTSAC	2 cut(s)	86, 404
PagI	TCATGA	1 cut(s)	123
PfeI	GAWTC	1 cut(s)	61
PleI	GAGTC	1 cut(s)	411
PmaCI	CACGTG	2 cut(s)	529, 582
PmlI	CACGTG	2 cut(s)	529, 582
PpsI	GAGTC	1 cut(s)	411
Ppu21I	YACGTR	2 cut(s)	529, 582
PsiI	TTATAA	2 cut(s)	380, 443
PspCI	CACGTG	2 cut(s)	529, 582
PspN4I	GGNNCC	1 cut(s)	489
RsaI	GTAC	1 cut(s)	224
RsaNI	GTAC	1 cut(s)	223
RseI	CAYNNNNRTG	1 cut(s)	413
SaqAI	TTAA	2 cut(s)	306, 586
Sau3AI	GATC	2 cut(s)	104, 240
SchI	GAGTC	1 cut(s)	412
SduI	GDGCHC	1 cut(s)	304
SetI	ASST	5 cut(s)	149, 451, 493, 531, 584
SfaNI	GCATC	1 cut(s)	61
SmiMI	CAYNNNNRTG	1 cut(s)	413
SmlI	CTYRAG	1 cut(s)	305
SmoI	CTYRAG	1 cut(s)	305
SpeI	ACTAGT	1 cut(s)	109
Sse9I	AATT	4 cut(s)	39, 186, 246, 471
SsiI	CCGC	1 cut(s)	324
SspMI	CTAG	1 cut(s)	110
TaaI	ACNGT	2 cut(s)	354, 393
TaiI	ACGT	2 cut(s)	531, 584
TaqI	TCGA	1 cut(s)	12
TasI	AATT	4 cut(s)	39, 186, 246, 471
TatI	WGTACW	1 cut(s)	222
TfiI	GAWTC	1 cut(s)	61
Tru1I	TTAA	2 cut(s)	306, 586
Tru9I	TTAA	2 cut(s)	306, 586
TscAI	CASTG	1 cut(s)	417
TseFI	GTSAC	2 cut(s)	86, 404
Tsp45I	GTSAC	2 cut(s)	86, 404
TspDTI	ATGAA	2 cut(s)	112, 492
TspRI	CASTG	1 cut(s)	417
Vha464I	CTTAAG	1 cut(s)	305
XspI	CTAG	1 cut(s)	110

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.