pycom02g18830

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
OG0015716
Physical Location & Seq
Forward (+)
16912987 .. 16914046
1060 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g18830.6

Sequence Viewer

Length: 801 bp
ATGCACAATACTCTACAAGGACTCATTAGTTCAGCTAGACCCCAGATCATAGGATACAGGGATGTAAGCTACTGTTTTATAAACAAAAGATCGAAAATGTACAATAAGGCATCAAAAGGCCAGAATCCACATTGGACTTCTGAAATTGGCCAAAGTGAGCGTAAGAAATCAGTCCTTGCAAGAGTGATGAAACAAGACAGTACCCACCAACTTGCATGTAGAAAATTATACTGGACAATCAACCTTCTAATCTCTACAGAAGCCAACTTAAAAATTCAAATATATCAACCCGCACTTAGGCCCAATAAAAGTAGAAGCATAAAATTCCAGAAGCAGAATTATAATGCAGCAACTTTGAAGCCTTGTGGTCATGCAAATCAACATCACCACCAGAATCAAGCTGGCACGAGTCATCTTAATCACGCAGACCCGCAACCTTACCTTTCCCTCTGCCCAATCTGCTGTGCAGCTCTTAGAAAATTATGCCCTATGACAGACGGTAGCAATGAACAAATTGTAGGTAGCTCTGCAGCTTATTCTAAACAATTCGACATTACAGAAACAACCATTACTTGCAGTCGCAGTTCCAATCTTGAAACTACTAAGCACCGGTCAACAGCATACCGTCAAGGACCCACAAGACTTTTCCTCCAACCAGGAGGCCAATCACAACACGACACATGTCGGTATCAGAAGTCAATCACAGCACGACACGTGTCGATATCAGAAGCCAATCACAACATGACACGTGTCAATGTCAAAACAAAACTAGAAACTTTCTTCTATAAAAGGAAATCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

267

Amino Acids

30.24

Weight (kDa)

9.93

Isoelectric Point (pI)

51.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 80, 342
AciI CCGC 2 cut(s) 291, 431
AcoI YGGCCR 1 cut(s) 148
AcsI RAATTY 2 cut(s) 273, 323
AcvI CACGTG 2 cut(s) 715, 749
AfaI GTAC 2 cut(s) 101, 202
AfiI CCNNNNNNNGG 1 cut(s) 297
AflIII ACRYGT 5 cut(s) 680, 712, 714, 746, 748
AgeI ACCGGT 1 cut(s) 609
AgsI TTSAA 3 cut(s) 278, 358, 596
AjnI CCWGG 1 cut(s) 655
AluBI AGCT 6 cut(s) 35, 69, 401, 470, 525, 533
AluI AGCT 6 cut(s) 35, 69, 401, 470, 525, 533
AoxI GGCC 4 cut(s) 118, 148, 299, 661
ApeKI GCWGC 3 cut(s) 347, 467, 530
ApoI RAATTY 2 cut(s) 273, 323
AsiGI ACCGGT 1 cut(s) 609
AspS9I GGNCC 2 cut(s) 300, 632
AsuHPI GGTGA 1 cut(s) 377
AvaII GGWCC 1 cut(s) 632
BalI TGGCCA 1 cut(s) 150
BauI CACGAG 1 cut(s) 406
BbrPI CACGTG 2 cut(s) 715, 749
BbvI GCAGC 3 cut(s) 359, 479, 542
BciT130I CCWGG 1 cut(s) 657
BciVI GTATCC 1 cut(s) 47
BfaI CTAG 2 cut(s) 36, 770
BfmI CTRYAG 2 cut(s) 255, 528
BfuI GTATCC 1 cut(s) 47
BisI GCNGC 3 cut(s) 348, 468, 531
BlsI GCNGC 3 cut(s) 349, 469, 532
Bme1390I CCNGG 1 cut(s) 657
Bme18I GGWCC 1 cut(s) 632
BmgT120I GGNCC 2 cut(s) 300, 632
BmiI GGNNCC 1 cut(s) 634
BmrFI CCNGG 1 cut(s) 657
BmsI GCATC 1 cut(s) 119
BoxI GACNNNNGTC 3 cut(s) 681, 715, 749
BsaAI YACGTR 2 cut(s) 715, 749
BsaWI WCCGGW 1 cut(s) 609
BsaXI ACNNNNNCTCC 2 cut(s) 633, 663
Bsc4I CCNNNNNNNGG 1 cut(s) 297
Bse118I RCCGGY 1 cut(s) 609
Bse1I ACTGG 1 cut(s) 236
Bse3DI GCAATG 1 cut(s) 511
BseBI CCWGG 1 cut(s) 657
BseGI GGATG 1 cut(s) 67
BseLI CCNNNNNNNGG 1 cut(s) 297
BseMI GCAATG 1 cut(s) 511
BseNI ACTGG 1 cut(s) 236
BseXI GCAGC 3 cut(s) 359, 479, 542
BsgI GTGCAG 1 cut(s) 486
BshFI GGCC 4 cut(s) 120, 150, 301, 663
BshTI ACCGGT 1 cut(s) 609
BsiSI CCGG 1 cut(s) 610
BslI CCNNNNNNNGG 1 cut(s) 297
BsnI GGCC 4 cut(s) 120, 150, 301, 663
Bsp1407I TGTACA 1 cut(s) 99
Bsp143I GATC 2 cut(s) 45, 89
BspACI CCGC 2 cut(s) 291, 431
BspANI GGCC 4 cut(s) 120, 150, 301, 663
BspLI GGNNCC 1 cut(s) 634
BspMAI CTGCAG 1 cut(s) 532
BsrDI GCAATG 1 cut(s) 511
BsrFI RCCGGY 1 cut(s) 609
BsrGI TGTACA 1 cut(s) 99
BsrI ACTGG 1 cut(s) 236
BssAI RCCGGY 1 cut(s) 609
BssMI GATC 2 cut(s) 45, 89
BssSI CACGAG 1 cut(s) 406
Bst2BI CACGAG 1 cut(s) 406
Bst2UI CCWGG 1 cut(s) 657
Bst4CI ACNGT 4 cut(s) 74, 200, 500, 626
BstAUI TGTACA 1 cut(s) 99
BstBAI YACGTR 2 cut(s) 715, 749
BstC8I GCNNGC 1 cut(s) 403
BstDEI CTNAG 3 cut(s) 296, 473, 603
BstF5I GGATG 1 cut(s) 67
BstKTI GATC 2 cut(s) 48, 92
BstMBI GATC 2 cut(s) 45, 89
BstMWI GCNNNNNNNGC 1 cut(s) 459
BstNI CCWGG 1 cut(s) 657
BstNSI RCATGY 2 cut(s) 219, 684
BstPAI GACNNNNGTC 3 cut(s) 681, 715, 749
BstSCI CCNGG 1 cut(s) 655
BstSFI CTRYAG 2 cut(s) 255, 528
BstV1I GCAGC 3 cut(s) 359, 479, 542
BsuI GTATCC 1 cut(s) 47
BsuRI GGCC 4 cut(s) 120, 150, 301, 663
BtsCI GGATG 1 cut(s) 67
Cac8I GCNNGC 1 cut(s) 403
Cfr10I RCCGGY 1 cut(s) 609
Cfr13I GGNCC 2 cut(s) 300, 632
Csp6I GTAC 2 cut(s) 100, 201
CspAI ACCGGT 1 cut(s) 609
CviAII CATG 4 cut(s) 216, 371, 681, 742
CviQI GTAC 2 cut(s) 100, 201
DdeI CTNAG 3 cut(s) 296, 473, 603
DpnI GATC 2 cut(s) 47, 91
DpnII GATC 2 cut(s) 45, 89
EaeI YGGCCR 1 cut(s) 148
Eco32I GATATC 1 cut(s) 723
Eco47I GGWCC 1 cut(s) 632
Eco72I CACGTG 2 cut(s) 715, 749
EcoO109I RGGNCCY 1 cut(s) 632
EcoRII CCWGG 1 cut(s) 655
EcoRV GATATC 1 cut(s) 723
FaeI CATG 4 cut(s) 219, 374, 684, 745
FatI CATG 4 cut(s) 215, 370, 680, 741
FauI CCCGC 2 cut(s) 298, 438
Fnu4HI GCNGC 3 cut(s) 348, 468, 531
FokI GGATG 1 cut(s) 74
Fsp4HI GCNGC 3 cut(s) 348, 468, 531
FspBI CTAG 2 cut(s) 36, 770
GluI GCNGC 3 cut(s) 348, 468, 531
HaeIII GGCC 4 cut(s) 120, 150, 301, 663
HapII CCGG 1 cut(s) 610
Hin1II CATG 4 cut(s) 219, 374, 684, 745
HincII GTYRAC 1 cut(s) 615
HindII GTYRAC 1 cut(s) 615
HinfI GANTC 4 cut(s) 21, 124, 394, 409
HpaII CCGG 1 cut(s) 610
HphI GGTGA 1 cut(s) 377
Hpy166II GTNNAC 1 cut(s) 615
Hpy188I TCNGA 3 cut(s) 142, 693, 727
Hpy188III TCNNGA 2 cut(s) 328, 593
Hpy8I GTNNAC 1 cut(s) 615
HpyAV CCTTC 1 cut(s) 254
HpyCH4III ACNGT 4 cut(s) 74, 200, 500, 626
HpyCH4IV ACGT 2 cut(s) 714, 748
HpyCH4V TGCA 8 cut(s) 4, 179, 215, 347, 374, 467, 530, 576
HpyF10VI GCNNNNNNNGC 1 cut(s) 459
HpyF3I CTNAG 3 cut(s) 296, 473, 603
HpySE526I ACGT 2 cut(s) 714, 748
Hsp92II CATG 4 cut(s) 219, 374, 684, 745
Kzo9I GATC 2 cut(s) 45, 89
Lsp1109I GCAGC 3 cut(s) 359, 479, 542
LweI GCATC 1 cut(s) 119
MaeI CTAG 2 cut(s) 36, 770
MaeII ACGT 2 cut(s) 714, 748
MalI GATC 2 cut(s) 47, 91
MboI GATC 2 cut(s) 45, 89
MboII GAAGA 1 cut(s) 772
MlsI TGGCCA 1 cut(s) 150
MluCI AATT 8 cut(s) 144, 224, 273, 323, 337, 479, 513, 545
MluNI TGGCCA 1 cut(s) 150
MlyI GAGTC 2 cut(s) 15, 418
MmeI TCCRAC 1 cut(s) 676
MnlI CCTC 3 cut(s) 458, 653, 659
Mox20I TGGCCA 1 cut(s) 150
MscI TGGCCA 1 cut(s) 150
MseI TTAA 2 cut(s) 269, 417
Msp20I TGGCCA 1 cut(s) 150
MspI CCGG 1 cut(s) 610
MspR9I CCNGG 1 cut(s) 657
MvaI CCWGG 1 cut(s) 657
MwoI GCNNNNNNNGC 1 cut(s) 459
NdeII GATC 2 cut(s) 45, 89
NlaIII CATG 4 cut(s) 219, 374, 684, 745
NlaIV GGNNCC 1 cut(s) 634
NspI RCATGY 2 cut(s) 219, 684
PciI ACATGT 1 cut(s) 680
PfeI GAWTC 2 cut(s) 124, 394
PinAI ACCGGT 1 cut(s) 609
PkrI GCNGC 3 cut(s) 349, 469, 532
PleI GAGTC 2 cut(s) 15, 417
PmaCI CACGTG 2 cut(s) 715, 749
PmlI CACGTG 2 cut(s) 715, 749
PpsI GAGTC 2 cut(s) 15, 417
Ppu21I YACGTR 2 cut(s) 715, 749
PpuMI RGGWCCY 1 cut(s) 632
PscI ACATGT 1 cut(s) 680
PshAI GACNNNNGTC 3 cut(s) 681, 715, 749
PsiI TTATAA 2 cut(s) 80, 342
Psp5II RGGWCCY 1 cut(s) 632
Psp6I CCWGG 1 cut(s) 655
PspCI CACGTG 2 cut(s) 715, 749
PspGI CCWGG 1 cut(s) 655
PspN4I GGNNCC 1 cut(s) 634
PspPI GGNCC 2 cut(s) 300, 632
PspPPI RGGWCCY 1 cut(s) 632
PstI CTGCAG 1 cut(s) 532
RsaI GTAC 2 cut(s) 101, 202
RsaNI GTAC 2 cut(s) 100, 201
SaqAI TTAA 2 cut(s) 269, 417
SatI GCNGC 3 cut(s) 348, 468, 531
Sau3AI GATC 2 cut(s) 45, 89
Sau96I GGNCC 2 cut(s) 300, 632
SchI GAGTC 2 cut(s) 15, 418
ScrFI CCNGG 1 cut(s) 657
SfaNI GCATC 1 cut(s) 119
SfcI CTRYAG 2 cut(s) 255, 528
SinI GGWCC 1 cut(s) 632
Sse9I AATT 8 cut(s) 144, 224, 273, 323, 337, 479, 513, 545
SsiI CCGC 2 cut(s) 291, 431
SspMI CTAG 2 cut(s) 36, 770
StyD4I CCNGG 1 cut(s) 655
TaaI ACNGT 4 cut(s) 74, 200, 500, 626
TaiI ACGT 2 cut(s) 717, 751
TaqI TCGA 3 cut(s) 92, 549, 719
TasI AATT 8 cut(s) 144, 224, 273, 323, 337, 479, 513, 545
TatI WGTACW 1 cut(s) 99
TfiI GAWTC 2 cut(s) 124, 394
Tru1I TTAA 2 cut(s) 269, 417
Tru9I TTAA 2 cut(s) 269, 417
TseI GCWGC 3 cut(s) 347, 467, 530
TspDTI ATGAA 2 cut(s) 203, 522
VpaK11BI GGWCC 1 cut(s) 632
XapI RAATTY 2 cut(s) 273, 323
XceI RCATGY 2 cut(s) 219, 684
XcmI CCANNNNNNNNNTGG 1 cut(s) 398
XspI CTAG 2 cut(s) 36, 770
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.