Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0004432

Physical Location & Seq

Genomic Coordinates Reverse (-)

4904812 .. 4906935

Gene Structure 2124 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1011 bp

ATGGACCATGACGACTTTCGGACCATCTTAGAAAGTTCGGAAGTGGATATATGGACGTTCATGGACACTGCCATAGCTGTCGCTTCGGCTGATTATGGCACTGAACTCAAGCACCGGAGGGATGGCATTGTCGAGCGCCTCTATGCCACAGCTTCCGTTCCGCCTCAATGCCCAAACTGCGATGCTGATGGGCCTAATGGGCACAATGGTAACCAGCCCAAAGCAGTTTCACCGTACACTCCGCAGTCTGTTGGTGGAGATGGTGGTGAGGAGGATGAGGAGGAGTTGGATCCCTACGCAGGGTTGTTCGATGATGAGCAGAAGAAGATTCTAGATATCAAGAAACAGCTTGAGGATCCTTATCAGCAACTTTGTTCATGTCAGTCTGAGGATACATTGGTTGAGTTGCTTCAAACTCTAGCAGATATGGAAATATCAGTCCAAGAACTTAAGGAGGCTGATATTGGAAAGCATGTGAGTCAATTGCGGAAGCAGCATCCAAGCGATGTTGTTAGGCGATTGGCAAAGCAAATTGTCAAGTATGAACATGTTTCGTTTCTCTTCACTTTTGATGAAGACTCACCACAGCAGAAAATCCCCCACAACGGACTTCACCAGGTTCCTGATTTTGCATACTCTCCAAATCCTCACAATGGGAGTTCTGGGTCAGACAAGAACAATTCAGAACCAGAACGCAAGTCAAAGGCAGTTCCTAGAAGGGATGCTCCACCAAAACCTACACAATTGACCCCTGTGTCTGCTTCTGCTCCTCAAAATAGACAGATGGGGCAGAAGGAAAGCAATTTTGACTCTGATAGATTGGCTTCTGCAAGAAGACGACTGCAGGCAAATTACAAAGAAGCTGAAAATGCCAAAAGGCAGAGAACAATTCAAGTGATGGACATCCATGAGATACCAAAGCCGAAGAATTCTTTCATTGCGAGGAACAAAGGCGGCGGAGGAGGCGGAGGAGGAGGCGGAAGTGGCTCTCATCAAGGCAGGCATTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006139 GO:0006351 GO:0006354 GO:0006366 GO:0006368 GO:0006725 GO:0006807 GO:0008023 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016070 GO:0018130 GO:0019438 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0070013 GO:0070449 GO:0071704 GO:0090304 GO:0097659 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Med26

Protein Analysis

337

Amino Acids

37.23

Weight (kDa)

5.58

Isoelectric Point (pI)

57.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Med26	PF08711	135 - 180	8.5e-10	TFIIS helical bundle-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004432)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G09850 AT5G09850 AT5G09850 AT5G09850 AT5G09850
fragaria_vesca	FvH4_1g23670 FvH4_1g23670 FvH4_1g23670 FvH4_1g23670
malus_domestica	MD01G1024900.v1.1 MD15G1319400.v1.1
prunus_persica	Prupe.6G180300_v2.0.a1 Prupe.6G180300_v2.0.a1 Prupe.6G180300_v2.0.a1 Prupe.6G180300_v2.0.a1 Prupe.6G180300_v2.0.a1 Prupe.6G180300_v2.0.a1
pyrus_communis	pycom01g05280 pycom15g29740
rosa_chinensis	RchiOBHm_Chr2g0119271
rosa_laevigata	RLG00000018461
rosa_multiflora	Rmu_co8400383.1_g000001 Rmu_sc0002788.1_g000002 Rmu_ssc0000264.1_g000001
rosa_roxburghii	Rroxscaffold_2G00124360
rosa_rugosa	Rorug02G0221400 Rorug02G0221400
rosa_samantha	Rh2AG279500 Rh2BG290200 Rh2DG285500 Rh2DG304500
rosa_wichuraiana	Rw2G022230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	754
AciI	CCGC	7 cut(s)	161, 242, 487, 954, 957, 966, 978
AclWI	GGATC	4 cut(s)	284, 297, 350, 363
AcsI	RAATTY	1 cut(s)	928
AfaI	GTAC	1 cut(s)	236
AfiI	CCNNNNNNNGG	4 cut(s)	299, 300, 605, 653
AflII	CTTAAG	1 cut(s)	449
AflIII	ACRYGT	1 cut(s)	547
AgsI	TTSAA	2 cut(s)	413, 893
AjnI	CCWGG	1 cut(s)	615
AluBI	AGCT	4 cut(s)	77, 152, 349, 863
AluI	AGCT	4 cut(s)	77, 152, 349, 863
AlwI	GGATC	4 cut(s)	284, 297, 350, 363
AoxI	GGCC	1 cut(s)	191
ApeKI	GCWGC	1 cut(s)	493
ApoI	RAATTY	1 cut(s)	928
Asp700I	GAANNNNTTC	1 cut(s)	932
AspLEI	GCGC	1 cut(s)	138
AspS9I	GGNCC	3 cut(s)	4, 21, 191
AsuHPI	GGTGA	4 cut(s)	222, 278, 573, 605
AvaII	GGWCC	2 cut(s)	4, 21
BaeGI	GKGCMC	1 cut(s)	204
BaeI	ACNNNNGTAYC	2 cut(s)	384, 417
BamHI	GGATCC	2 cut(s)	289, 355
BbsI	GAAGAC	2 cut(s)	582, 841
BbvI	GCAGC	1 cut(s)	505
BccI	CCATC	6 cut(s)	32, 116, 182, 254, 778, 892
BciT130I	CCWGG	1 cut(s)	617
BciVI	GTATCC	1 cut(s)	385
BfaI	CTAG	3 cut(s)	332, 419, 714
BfmI	CTRYAG	1 cut(s)	842
BfoI	RGCGCY	1 cut(s)	139
BfrI	CTTAAG	1 cut(s)	449
BfuI	GTATCC	1 cut(s)	385
BglI	GCCNNNNNGGC	1 cut(s)	199
BisI	GCNGC	2 cut(s)	494, 955
BlsI	GCNGC	2 cut(s)	495, 956
Bme1390I	CCNGG	1 cut(s)	617
Bme18I	GGWCC	2 cut(s)	4, 21
BmgT120I	GGNCC	3 cut(s)	4, 21, 191
BmiI	GGNNCC	3 cut(s)	291, 357, 621
BmrFI	CCNGG	1 cut(s)	617
BmsI	GCATC	3 cut(s)	172, 505, 712
BpiI	GAAGAC	2 cut(s)	582, 841
BpuEI	CTTGAG	2 cut(s)	92, 371
BsaBI	GATNNNNATC	2 cut(s)	360, 902
BsaWI	WCCGGW	1 cut(s)	114
Bsc4I	CCNNNNNNNGG	4 cut(s)	299, 300, 605, 653
Bse3DI	GCAATG	1 cut(s)	936
Bse8I	GATNNNNATC	2 cut(s)	360, 902
BseBI	CCWGG	1 cut(s)	617
BseGI	GGATG	5 cut(s)	127, 280, 496, 727, 903
BseJI	GATNNNNATC	2 cut(s)	360, 902
BseLI	CCNNNNNNNGG	4 cut(s)	299, 300, 605, 653
BseMI	GCAATG	1 cut(s)	936
BseMII	CTCAG	1 cut(s)	378
BseRI	GAGGAG	7 cut(s)	284, 293, 296, 759, 975, 984, 987
BseSI	GKGCMC	1 cut(s)	204
BseXI	GCAGC	1 cut(s)	505
BshFI	GGCC	1 cut(s)	193
BsiSI	CCGG	1 cut(s)	115
BslI	CCNNNNNNNGG	4 cut(s)	299, 300, 605, 653
BsnI	GGCC	1 cut(s)	193
Bsp1286I	GDGCHC	1 cut(s)	204
Bsp143I	GATC	2 cut(s)	289, 355
BspACI	CCGC	7 cut(s)	161, 242, 487, 954, 957, 966, 978
BspANI	GGCC	1 cut(s)	193
BspCNI	CTCAG	1 cut(s)	379
BspLI	GGNNCC	3 cut(s)	291, 357, 621
BspMAI	CTGCAG	1 cut(s)	846
BspPI	GGATC	4 cut(s)	284, 297, 350, 363
BspTI	CTTAAG	1 cut(s)	449
BsrDI	GCAATG	1 cut(s)	936
BssMI	GATC	2 cut(s)	289, 355
Bst2UI	CCWGG	1 cut(s)	617
Bst4CI	ACNGT	1 cut(s)	234
Bst6I	CTCTTC	1 cut(s)	566
BstAFI	CTTAAG	1 cut(s)	449
BstC8I	GCNNGC	2 cut(s)	846, 1001
BstDEI	CTNAG	2 cut(s)	28, 387
BstEII	GGTNACC	1 cut(s)	209
BstF5I	GGATG	5 cut(s)	127, 280, 496, 727, 903
BstH2I	RGCGCY	1 cut(s)	139
BstHHI	GCGC	1 cut(s)	138
BstKTI	GATC	2 cut(s)	292, 358
BstMBI	GATC	2 cut(s)	289, 355
BstMWI	GCNNNNNNNGC	6 cut(s)	177, 199, 493, 869, 963, 984
BstNI	CCWGG	1 cut(s)	617
BstNSI	RCATGY	2 cut(s)	476, 551
BstPI	GGTNACC	1 cut(s)	209
BstSCI	CCNGG	1 cut(s)	615
BstSFI	CTRYAG	1 cut(s)	842
BstSLI	GKGCMC	1 cut(s)	204
BstV1I	GCAGC	1 cut(s)	505
BstV2I	GAAGAC	2 cut(s)	582, 841
BstX2I	RGATCY	2 cut(s)	289, 355
BstYI	RGATCY	2 cut(s)	289, 355
BsuI	GTATCC	1 cut(s)	385
BsuRI	GGCC	1 cut(s)	193
BtgZI	GCGATG	2 cut(s)	195, 519
BtsCI	GGATG	5 cut(s)	127, 280, 496, 727, 903
BtsI	GCAGTG	1 cut(s)	66
BtsIMutI	CAGTG	2 cut(s)	66, 99
Cac8I	GCNNGC	2 cut(s)	846, 1001
CfoI	GCGC	1 cut(s)	138
Cfr13I	GGNCC	3 cut(s)	4, 21, 191
CsiI	ACCWGGT	1 cut(s)	615
Csp6I	GTAC	1 cut(s)	235
CviAII	CATG	6 cut(s)	8, 61, 378, 473, 548, 908
CviQI	GTAC	1 cut(s)	235
DdeI	CTNAG	2 cut(s)	28, 387
DpnI	GATC	2 cut(s)	291, 357
DpnII	GATC	2 cut(s)	289, 355
DrdI	GACNNNNNNGTC	1 cut(s)	754
DseDI	GACNNNNNNGTC	1 cut(s)	754
Eam1104I	CTCTTC	1 cut(s)	566
EarI	CTCTTC	1 cut(s)	566
EciI	GGCGGA	4 cut(s)	150, 972, 981, 993
Eco32I	GATATC	1 cut(s)	337
Eco47I	GGWCC	2 cut(s)	4, 21
Eco91I	GGTNACC	1 cut(s)	209
EcoO65I	GGTNACC	1 cut(s)	209
EcoRI	GAATTC	1 cut(s)	928
EcoRII	CCWGG	1 cut(s)	615
EcoRV	GATATC	1 cut(s)	337
FaeI	CATG	6 cut(s)	11, 64, 381, 476, 551, 911
FatI	CATG	6 cut(s)	7, 60, 377, 472, 547, 907
Fnu4HI	GCNGC	2 cut(s)	494, 955
FokI	GGATG	5 cut(s)	134, 287, 483, 734, 890
Fsp4HI	GCNGC	2 cut(s)	494, 955
FspBI	CTAG	3 cut(s)	332, 419, 714
GlaI	GCGC	1 cut(s)	137
GluI	GCNGC	2 cut(s)	494, 955
HaeII	RGCGCY	1 cut(s)	139
HaeIII	GGCC	1 cut(s)	193
HapII	CCGG	1 cut(s)	115
HhaI	GCGC	1 cut(s)	138
Hin1II	CATG	6 cut(s)	11, 64, 381, 476, 551, 911
Hin6I	GCGC	1 cut(s)	136
HinP1I	GCGC	1 cut(s)	136
HinfI	GANTC	4 cut(s)	328, 478, 578, 809
HpaII	CCGG	1 cut(s)	115
HphI	GGTGA	4 cut(s)	222, 278, 573, 605
Hpy166II	GTNNAC	1 cut(s)	237
Hpy188I	TCNGA	6 cut(s)	21, 40, 388, 670, 685, 814
Hpy188III	TCNNGA	3 cut(s)	332, 340, 623
Hpy8I	GTNNAC	1 cut(s)	237
HpyAV	CCTTC	2 cut(s)	711, 787
HpyCH4III	ACNGT	1 cut(s)	234
HpyCH4IV	ACGT	1 cut(s)	56
HpyCH4V	TGCA	3 cut(s)	632, 830, 844
HpyF10VI	GCNNNNNNNGC	6 cut(s)	177, 199, 493, 869, 963, 984
HpyF3I	CTNAG	2 cut(s)	28, 387
HpySE526I	ACGT	1 cut(s)	56
Hsp92II	CATG	6 cut(s)	11, 64, 381, 476, 551, 911
HspAI	GCGC	1 cut(s)	136
Kzo9I	GATC	2 cut(s)	289, 355
LmnI	GCTCC	2 cut(s)	730, 772
Lsp1109I	GCAGC	1 cut(s)	505
LweI	GCATC	3 cut(s)	172, 505, 712
MabI	ACCWGGT	1 cut(s)	615
MaeI	CTAG	3 cut(s)	332, 419, 714
MaeII	ACGT	1 cut(s)	56
MaeIII	GTNAC	1 cut(s)	209
MalI	GATC	2 cut(s)	291, 357
MboI	GATC	2 cut(s)	289, 355
MboII	GAAGA	6 cut(s)	334, 337, 553, 587, 846, 937
MfeI	CAATTG	2 cut(s)	482, 743
MflI	RGATCY	2 cut(s)	289, 355
MhlI	GDGCHC	1 cut(s)	204
MluCI	AATT	8 cut(s)	482, 531, 679, 743, 802, 850, 888, 928
MlyI	GAGTC	3 cut(s)	487, 572, 803
MmeI	TCCRAC	1 cut(s)	267
MroXI	GAANNNNTTC	1 cut(s)	932
MseI	TTAA	1 cut(s)	450
MspCI	CTTAAG	1 cut(s)	449
MspI	CCGG	1 cut(s)	115
MspR9I	CCNGG	1 cut(s)	617
MunI	CAATTG	2 cut(s)	482, 743
MvaI	CCWGG	1 cut(s)	617
MwoI	GCNNNNNNNGC	6 cut(s)	177, 199, 493, 869, 963, 984
NdeII	GATC	2 cut(s)	289, 355
NlaIII	CATG	6 cut(s)	11, 64, 381, 476, 551, 911
NlaIV	GGNNCC	3 cut(s)	291, 357, 621
NspI	RCATGY	2 cut(s)	476, 551
PciI	ACATGT	1 cut(s)	547
PdmI	GAANNNNTTC	1 cut(s)	932
PfeI	GAWTC	1 cut(s)	328
PkrI	GCNGC	2 cut(s)	495, 956
PleI	GAGTC	3 cut(s)	486, 572, 803
PpsI	GAGTC	3 cut(s)	486, 572, 803
PscI	ACATGT	1 cut(s)	547
Psp6I	CCWGG	1 cut(s)	615
PspEI	GGTNACC	1 cut(s)	209
PspGI	CCWGG	1 cut(s)	615
PspN4I	GGNNCC	3 cut(s)	291, 357, 621
PspPI	GGNCC	3 cut(s)	4, 21, 191
PstI	CTGCAG	1 cut(s)	846
PsuI	RGATCY	2 cut(s)	289, 355
RsaI	GTAC	1 cut(s)	236
RsaNI	GTAC	1 cut(s)	235
SaqAI	TTAA	1 cut(s)	450
SatI	GCNGC	2 cut(s)	494, 955
Sau3AI	GATC	2 cut(s)	289, 355
Sau96I	GGNCC	3 cut(s)	4, 21, 191
SchI	GAGTC	3 cut(s)	487, 572, 803
ScrFI	CCNGG	1 cut(s)	617
SduI	GDGCHC	1 cut(s)	204
SetI	ASST	7 cut(s)	59, 79, 154, 351, 621, 739, 865
SexAI	ACCWGGT	1 cut(s)	615
SfaNI	GCATC	3 cut(s)	172, 505, 712
SfcI	CTRYAG	1 cut(s)	842
SinI	GGWCC	2 cut(s)	4, 21
SmlI	CTYRAG	3 cut(s)	107, 350, 449
SmoI	CTYRAG	3 cut(s)	107, 350, 449
Sse9I	AATT	8 cut(s)	482, 531, 679, 743, 802, 850, 888, 928
SsiI	CCGC	7 cut(s)	161, 242, 487, 954, 957, 966, 978
SspMI	CTAG	3 cut(s)	332, 419, 714
StyD4I	CCNGG	1 cut(s)	615
TaaI	ACNGT	1 cut(s)	234
TaiI	ACGT	1 cut(s)	59
TaqI	TCGA	2 cut(s)	132, 309
TasI	AATT	8 cut(s)	482, 531, 679, 743, 802, 850, 888, 928
TauI	GCSGC	1 cut(s)	957
TfiI	GAWTC	1 cut(s)	328
Tru1I	TTAA	1 cut(s)	450
Tru9I	TTAA	1 cut(s)	450
TscAI	CASTG	2 cut(s)	73, 106
TseI	GCWGC	1 cut(s)	493
TspDTI	ATGAA	5 cut(s)	49, 366, 558, 588, 925
TspGWI	ACGGA	2 cut(s)	145, 621
TspRI	CASTG	2 cut(s)	73, 106
Vha464I	CTTAAG	1 cut(s)	449
VpaK11BI	GGWCC	2 cut(s)	4, 21
XapI	RAATTY	1 cut(s)	928
XbaI	TCTAGA	1 cut(s)	331
XceI	RCATGY	2 cut(s)	476, 551
XmnI	GAANNNNTTC	1 cut(s)	932
XspI	CTAG	3 cut(s)	332, 419, 714

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.