Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0012504

Physical Location & Seq

Genomic Coordinates Reverse (-)

5182220 .. 5187068

Gene Structure 4849 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2208 bp

ATGTTAGATGACATCAACCGCCGTGACATTGAAATGCGCGCCAAGATCTTCCCAATTCTAATTGTTCATTTCTTTCTTCCCCACGAAACCACCCAACCTCCTCCTAATCTCTCCGTCTCCGAGATCAATCAAAAGAAGATGCAAAGCCCAGATCCAACGGCGGAGGACGAATCCCAGGCCGTCAACCGCCGCATCCAACGGTTGTCCCTGCACCTGATCCCCAATTACCCATTTCCCCGAAACGACGCAGCTCAGCAGCTTGAGCTGTTGGAGTGCGCTTCCAAGGCGGCGAAGCTGACGGTGGACACGAGCAGCCTCTCAAACTACATGAGAGGCAAGCACCGGGAAATCCAGGACAGAGTGTTGGATTACTTCAACAAGCGGCCGGAGCTTCAGACCCCGGTGGAGATTTTGAAGGACGACCACCGGGAGCTTTGCATGAAGCAGCTTGTGGGGTTGGTGAGAGAGGCTGGGATCAGGCCTTTCCGGTACGTCGTCGATGACCCGGCTAAGTACTTTGCTATTTTGGAGGCCGTTGGCAGCGTCGACATGTCTCTCGGGATTAAGATGGGGGTGCAGTACAGTCTTTGGGGAGGTTCTGTGCTTAACTTAGGAACCAAAAAGCACAAGGATAAATATTTTGATGGTATCGACAATATGGAGTATCCAGGTTGTTTTGCTATGACCGAACTACATCATGGCTCAAATGTTCAAGGTCTACAAACAGTGGCAGCTTTTGATCCACTCACAGATGAATTTATAATCGACACACCCAATGATGGGGCCATCAAATGGTGGATTGGCAATGCTGCCGTTCATGGAAAGTTTGCTACTGTTTTCGCTAAGCTGATGTTGCCGACTCATGACACAAAGGGTATTACTGATATGGGTGTCCATGCCTTCATTGTGCCAATAAGGGATTTCAAGACCCACCAAACTCTTCCAGGAATTGAGATACATGATTGTGGCCACAAGGTTGGTCTGAATGGGGTAGACAATGGAGCATTAAGATTCTGCTCAGTGAGAATCCCTCGTGATAATCTTCTTAATCGGTTTGGAGATGTCTCCCGGGACGGGAAATACACAAGTAGTTTACCATCTATAAATAAAAGATTTGCTGCCACTCTAGGTGAACTTGTAGGTGGAAGGGTCGGTCTTGCATATTCTTCGGTTAGCGTCCTGAAGATTGCTGCCACAATTGCAATCCGATATTCTCTACTGCGCCAGCAGTTTGGTCCTCCCAAGCAACCTGAAGTTAGTATTCTTGATTATCAGTCTCAACAACACAAGTTAATGCCCATGCTGGCTTCAACTTATGCATTCCATTTTGCCACGTTGCATTTGGTGGAGAAATATTCAGAGATGAAAAAGTTTCATGATGAACAATTGGTTGGTGACGTCCATTCGCTCTCAGCAGGGCTCAAGGCTTATGTGACAGCATATACTGCAAAGTCATTAAGTATCTGCAGGGAATCTTGTGGAGGCCATGGGTATGCTGCTGTTAACCGCTTCGGTAGCCTGAGGAATGACCATGACATTTTTCAGACGTTTGAGGGGGACAATACAGTGCTTCTACAACAGGTAGCGGGTGATCTGTTGAAGCAATATAAGGAGAAATTTCAAGGCGGGACACTCACTGTCACATGGAACTACCTCAGAGAGTCCATGAACTCGTATCTATCTCAGCCAAATCCAGTGACTGCTCGATGGGAAACTGAAGACCATTTGCGAGATCCTAAGTTCCAGTTGGATGCTTTCAGATACCGAACTTCTCGATTACTTCAAAGTGTTGCAGTAAGACTGCGCAAGCATTCCAAAACTCTTGGCAGTTTTGGTGCATGGAATCGATGCTTAAATCACCTTTTGACTCTGGCGGAGTCCCATATTGAGTCTGTCATCCTTGCCAAGTTTGTTGAAGCTGTCCAGAAATGTCCAGATCCAAGTTCTCGAGCTGCTCTGAAACTCGTCTGTGATCTTTATGCACTGGAGCGCATTTGGAAAGACATCGGAACCTATCGTAATGTTGATTATGTTGCACCAAACAAAGCTAAGGCAATTCACAAACTGATGGAGTACCTGAGTTTCCAGGTGAGAAATATAGCAAGGGAACTTGTAGACACATTTGACATTCCAGATTATGTCACAAGAGCCCCAATTGCAATGCAGTCGGATGCCTACGCACACTACACACACTACGTCGGATTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001676 GO:0003674 GO:0003824 GO:0003995 GO:0003997 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0006082 GO:0006629 GO:0006631 GO:0006635 GO:0008150 GO:0008152 GO:0009056 GO:0009062 GO:0009987 GO:0016042 GO:0016054 GO:0016491 GO:0016627 GO:0016634 GO:0019395 GO:0019752 GO:0030258 GO:0032787 GO:0033539 GO:0034440 GO:0036094 GO:0042579 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046395 GO:0048037 GO:0050660 GO:0050662 GO:0055114 GO:0071704 GO:0072329 GO:0097159 GO:1901265 GO:1901363 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00071 ko00592 ko01040 ko01100 ko01110 ko01212 ko03320 ko04024 ko04146 map00071 map00592 map01040 map01100 map01110 map01212 map03320 map04024 map04146

Pfam Domains

Protein Families

ACOX Acyl-CoA_dh_1 Acyl-CoA_dh_M

Protein Analysis

736

Amino Acids

83.07

Weight (kDa)

8.55

Isoelectric Point (pI)

40.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Acyl-CoA_dh_M	PF02770	225 - 339	3.3e-11	Acyl-CoA dehydrogenase, middle domain
Acyl-CoA_dh_1	PF00441	374 - 530	6.9e-09	Acyl-CoA dehydrogenase, C-terminal domain
ACOX_C_alpha1	PF22924	377 - 532	1.5e-49	Acyl-CoA oxidase, C-alpha1 domain
ACOX	PF01756	578 - 727	1.7e-24	Acyl-CoA oxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012504)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G65110 AT5G65110
fragaria_vesca	FvH4_1g21250
malus_domestica	MD01G1026400.v1.1 MD15G1327100.v1.1
prunus_persica	Prupe.6G181800_v2.0.a1
pyrus_communis	pycom01g05460 pycom395g00040
rosa_chinensis	RchiOBHm_Chr2g0115091
rosa_laevigata	RLG00000018156
rosa_multiflora	Rmu_sc0002784.1_g000002
rosa_roxburghii	Rroxscaffold_2G00130560
rosa_rugosa	Rorug02G0193300 Rorug02G0193400
rosa_samantha	Rh2AG251800 Rh2BG261400 Rh2CG256300 Rh2DG259900
rosa_wichuraiana	Rw2G019640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	761
AatII	GACGTC	1 cut(s)	1401
Acc16I	TGCGCA	1 cut(s)	1805
AccB7I	CCANNNNNTGG	1 cut(s)	792
AccI	GTMKAC	4 cut(s)	546, 718, 993, 2115
AccII	CGCG	1 cut(s)	39
AclWI	GGATC	6 cut(s)	146, 211, 482, 734, 1727, 1931
AcoI	YGGCCR	2 cut(s)	383, 967
AcsI	RAATTY	2 cut(s)	755, 1616
AcuI	CTGAAG	4 cut(s)	377, 1202, 1272, 1737
AcyI	GRCGYC	1 cut(s)	1398
AfaI	GTAC	4 cut(s)	491, 515, 581, 2075
AfiI	CCNNNNNNNGG	4 cut(s)	779, 780, 792, 1074
AflIII	ACRYGT	1 cut(s)	549
AjnI	CCWGG	5 cut(s)	174, 351, 667, 943, 2085
AjuI	GAANNNNNNNTTGG	2 cut(s)	1374, 1406
Alw26I	GTCTC	4 cut(s)	121, 558, 1069, 1281
AlwI	GGATC	6 cut(s)	146, 211, 482, 734, 1727, 1931
AlwNI	CAGNNNCTG	1 cut(s)	1700
Ama87I	CYCGRG	3 cut(s)	557, 1068, 1947
AoxI	GGCC	7 cut(s)	177, 383, 479, 531, 783, 967, 1483
ApoI	RAATTY	2 cut(s)	755, 1616
AspLEI	GCGC	6 cut(s)	39, 41, 278, 1224, 1806, 1992
AspS9I	GGNCC	2 cut(s)	783, 1235
AsuC2I	CCSGG	6 cut(s)	344, 401, 428, 506, 1069, 1070
AsuHPI	GGTGA	6 cut(s)	472, 1142, 1406, 1601, 1850, 2101
AvaI	CYCGRG	3 cut(s)	557, 1068, 1947
AvaII	GGWCC	1 cut(s)	1235
AxyI	CCTNAGG	1 cut(s)	1520
BalI	TGGCCA	1 cut(s)	969
BanII	GRGCYC	2 cut(s)	1422, 2152
BauI	CACGAG	2 cut(s)	307, 1032
BbsI	GAAGAC	1 cut(s)	1725
BccI	CCATC	7 cut(s)	562, 638, 773, 794, 1105, 1701, 2062
BceAI	ACGGC	5 cut(s)	6, 164, 174, 518, 797
BcgI	CGANNNNNNTGC	4 cut(s)	1149, 1183, 2148, 2182
BciT130I	CCWGG	5 cut(s)	176, 353, 669, 945, 2087
BciVI	GTATCC	1 cut(s)	675
BcnI	CCSGG	6 cut(s)	344, 401, 428, 506, 1069, 1070
BcoDI	GTCTC	4 cut(s)	121, 558, 1069, 1281
BfaI	CTAG	1 cut(s)	1127
BfmI	CTRYAG	1 cut(s)	1465
BfuI	GTATCC	1 cut(s)	675
BglII	AGATCT	1 cut(s)	45
BlpI	GCTNAGC	2 cut(s)	252, 843
BmcAI	AGTACT	1 cut(s)	515
Bme18I	GGWCC	1 cut(s)	1235
BmeT110I	CYCGRG	3 cut(s)	557, 1068, 1947
BmgT120I	GGNCC	2 cut(s)	783, 1235
BmiI	GGNNCC	3 cut(s)	616, 784, 2011
BmsI	GCATC	5 cut(s)	129, 201, 1741, 1838, 2161
BpiI	GAAGAC	1 cut(s)	1725
BplI	GAGNNNNNCTC	2 cut(s)	1015, 1047
BpmI	CTGGAG	1 cut(s)	2006
Bpu10I	CCTNAGC	1 cut(s)	2049
Bpu1102I	GCTNAGC	2 cut(s)	252, 843
BpuEI	CTTGAG	2 cut(s)	281, 1406
BpuMI	CCSGG	6 cut(s)	344, 401, 428, 506, 1069, 1070
Bsa29I	ATCGAT	1 cut(s)	1846
BsaHI	GRCGYC	1 cut(s)	1398
BsaJI	CCNNGG	5 cut(s)	174, 282, 399, 1068, 1486
BsaWI	WCCGGW	1 cut(s)	486
BsaXI	ACNNNNNCTCC	4 cut(s)	82, 112, 585, 615
Bsc4I	CCNNNNNNNGG	4 cut(s)	779, 780, 792, 1074
Bse1I	ACTGG	3 cut(s)	1694, 1744, 1989
Bse21I	CCTNAGG	1 cut(s)	1520
Bse3DI	GCAATG	2 cut(s)	811, 2166
BseBI	CCWGG	5 cut(s)	176, 353, 669, 945, 2087
BseCI	ATCGAT	1 cut(s)	1846
BseDI	CCNNGG	5 cut(s)	174, 282, 399, 1068, 1486
BseGI	GGATG	4 cut(s)	192, 1756, 1896, 2176
BseLI	CCNNNNNNNGG	4 cut(s)	779, 780, 792, 1074
BseMI	GCAATG	2 cut(s)	811, 2166
BseMII	CTCAG	7 cut(s)	266, 1032, 1425, 1511, 1669, 1697, 2069
BseNI	ACTGG	3 cut(s)	1694, 1744, 1989
BsePI	GCGCGC	1 cut(s)	37
BseRI	GAGGAG	1 cut(s)	90
BseX3I	CGGCCG	1 cut(s)	383
BseYI	CCCAGC	1 cut(s)	470
BsgI	GTGCAG	2 cut(s)	194, 596
Bsh1236I	CGCG	1 cut(s)	39
Bsh1285I	CGRYCG	1 cut(s)	386
BshFI	GGCC	7 cut(s)	179, 385, 481, 533, 785, 969, 1485
BshVI	ATCGAT	1 cut(s)	1846
BsiEI	CGRYCG	1 cut(s)	386
BsiHKCI	CYCGRG	3 cut(s)	557, 1068, 1947
BsiSI	CCGG	7 cut(s)	343, 386, 401, 427, 487, 506, 1069
BslFI	GGGAC	5 cut(s)	190, 1085, 1571, 1642, 1864
BslI	CCNNNNNNNGG	4 cut(s)	779, 780, 792, 1074
BsmAI	GTCTC	4 cut(s)	121, 558, 1069, 1281
BsmBI	CGTCTC	1 cut(s)	121
BsmFI	GGGAC	5 cut(s)	190, 1085, 1571, 1642, 1864
BsmI	GAATGC	2 cut(s)	1319, 1810
BsnI	GGCC	7 cut(s)	179, 385, 481, 533, 785, 969, 1485
BsoBI	CYCGRG	3 cut(s)	557, 1068, 1947
Bsp1286I	GDGCHC	2 cut(s)	1422, 2152
Bsp1720I	GCTNAGC	2 cut(s)	252, 843
Bsp19I	CCATGG	1 cut(s)	1486
BspANI	GGCC	7 cut(s)	179, 385, 481, 533, 785, 969, 1485
BspCNI	CTCAG	7 cut(s)	265, 1031, 1424, 1512, 1668, 1696, 2070
BspDI	ATCGAT	1 cut(s)	1846
BspFNI	CGCG	1 cut(s)	39
BspHI	TCATGA	2 cut(s)	862, 1375
BspLI	GGNNCC	3 cut(s)	616, 784, 2011
BspMAI	CTGCAG	1 cut(s)	1469
BspPI	GGATC	6 cut(s)	146, 211, 482, 734, 1727, 1931
BsrDI	GCAATG	2 cut(s)	811, 2166
BsrI	ACTGG	3 cut(s)	1694, 1744, 1989
BssECI	CCNNGG	5 cut(s)	174, 282, 399, 1068, 1486
BssHII	GCGCGC	1 cut(s)	37
BssNI	GRCGYC	1 cut(s)	1398
BssSI	CACGAG	2 cut(s)	307, 1032
BssT1I	CCWWGG	2 cut(s)	282, 1486
Bst2BI	CACGAG	2 cut(s)	307, 1032
Bst2UI	CCWGG	5 cut(s)	176, 353, 669, 945, 2087
Bst4CI	ACNGT	7 cut(s)	201, 301, 584, 727, 835, 1567, 1639
Bst6I	CTCTTC	1 cut(s)	945
BstACI	GRCGYC	1 cut(s)	1398
BstAPI	GCANNNNNTGC	1 cut(s)	1445
BstC8I	GCNNGC	5 cut(s)	39, 338, 1226, 1305, 1808
BstDSI	CCRYGG	1 cut(s)	1486
BstF5I	GGATG	4 cut(s)	192, 1756, 1896, 2176
BstFNI	CGCG	1 cut(s)	39
BstHHI	GCGC	6 cut(s)	39, 41, 278, 1224, 1806, 1992
BstMAI	GTCTC	4 cut(s)	121, 558, 1069, 1281
BstMCI	CGRYCG	1 cut(s)	386
BstMWI	GCNNNNNNNGC	8 cut(s)	262, 284, 388, 853, 1199, 1445, 1515, 2156
BstNI	CCWGG	5 cut(s)	176, 353, 669, 945, 2087
BstNSI	RCATGY	1 cut(s)	553
BstSFI	CTRYAG	1 cut(s)	1465
BstUI	CGCG	1 cut(s)	39
BstV2I	GAAGAC	1 cut(s)	1725
BstX2I	RGATCY	4 cut(s)	45, 151, 1732, 1936
BstXI	CCANNNNNNTGG	2 cut(s)	977, 1232
BstYI	RGATCY	4 cut(s)	45, 151, 1732, 1936
BstZI	CGGCCG	1 cut(s)	383
Bsu15I	ATCGAT	1 cut(s)	1846
Bsu36I	CCTNAGG	1 cut(s)	1520
BsuI	GTATCC	1 cut(s)	675
BsuRI	GGCC	7 cut(s)	179, 385, 481, 533, 785, 969, 1485
BsuTUI	ATCGAT	1 cut(s)	1846
BtgI	CCRYGG	1 cut(s)	1486
BtsCI	GGATG	4 cut(s)	192, 1756, 1896, 2176
BtsIMutI	CAGTG	6 cut(s)	732, 1026, 1572, 1635, 1701, 1982
Cac8I	GCNNGC	5 cut(s)	39, 338, 1226, 1305, 1808
CaiI	CAGNNNCTG	1 cut(s)	1700
CciI	TCATGA	2 cut(s)	862, 1375
CfoI	GCGC	6 cut(s)	39, 41, 278, 1224, 1806, 1992
Cfr13I	GGNCC	2 cut(s)	783, 1235
Cfr9I	CCCGGG	1 cut(s)	1068
ClaI	ATCGAT	1 cut(s)	1846
CseI	GACGC	3 cut(s)	254, 532, 1165
Csp6I	GTAC	4 cut(s)	490, 514, 580, 2074
CviQI	GTAC	4 cut(s)	490, 514, 580, 2074
EaeI	YGGCCR	2 cut(s)	383, 967
EagI	CGGCCG	1 cut(s)	383
Eam1104I	CTCTTC	1 cut(s)	945
EarI	CTCTTC	1 cut(s)	945
EciI	GGCGGA	2 cut(s)	176, 1889
EclXI	CGGCCG	1 cut(s)	383
Eco130I	CCWWGG	2 cut(s)	282, 1486
Eco147I	AGGCCT	1 cut(s)	481
Eco24I	GRGCYC	2 cut(s)	1422, 2152
Eco47I	GGWCC	1 cut(s)	1235
Eco52I	CGGCCG	1 cut(s)	383
Eco57I	CTGAAG	4 cut(s)	377, 1202, 1272, 1737
Eco81I	CCTNAGG	1 cut(s)	1520
Eco88I	CYCGRG	3 cut(s)	557, 1068, 1947
EcoRII	CCWGG	5 cut(s)	174, 351, 667, 943, 2085
EcoT14I	CCWWGG	2 cut(s)	282, 1486
EcoT22I	ATGCAT	1 cut(s)	1321
EcoT38I	GRGCYC	2 cut(s)	1422, 2152
ErhI	CCWWGG	2 cut(s)	282, 1486
Esp3I	CGTCTC	1 cut(s)	121
FaqI	GGGAC	5 cut(s)	190, 1085, 1571, 1642, 1864
FauI	CCCGC	2 cut(s)	1579, 1619
FblI	GTMKAC	4 cut(s)	546, 718, 993, 2115
FokI	GGATG	4 cut(s)	179, 1763, 1883, 2183
FriOI	GRGCYC	2 cut(s)	1422, 2152
FspBI	CTAG	1 cut(s)	1127
FspI	TGCGCA	1 cut(s)	1805
GlaI	GCGC	6 cut(s)	38, 40, 277, 1223, 1805, 1991
GsaI	CCCAGC	1 cut(s)	474
GsuI	CTGGAG	1 cut(s)	2006
HaeIII	GGCC	7 cut(s)	179, 385, 481, 533, 785, 969, 1485
HapII	CCGG	7 cut(s)	343, 386, 401, 427, 487, 506, 1069
HgaI	GACGC	3 cut(s)	254, 532, 1165
HhaI	GCGC	6 cut(s)	39, 41, 278, 1224, 1806, 1992
Hin1I	GRCGYC	1 cut(s)	1398
Hin6I	GCGC	6 cut(s)	37, 39, 276, 1222, 1804, 1990
HinP1I	GCGC	6 cut(s)	37, 39, 276, 1222, 1804, 1990
HincII	GTYRAC	3 cut(s)	184, 547, 1504
HindII	GTYRAC	3 cut(s)	184, 547, 1504
HpaI	GTTAAC	1 cut(s)	1504
HpaII	CCGG	7 cut(s)	343, 386, 401, 427, 487, 506, 1069
HphI	GGTGA	6 cut(s)	472, 1142, 1406, 1601, 1850, 2101
Hpy166II	GTNNAC	9 cut(s)	184, 304, 547, 719, 994, 1094, 1133, 1504, 2116
Hpy8I	GTNNAC	9 cut(s)	184, 304, 547, 719, 994, 1094, 1133, 1504, 2116
Hpy99I	CGWCG	5 cut(s)	248, 497, 500, 548, 2201
HpyAV	CCTTC	3 cut(s)	409, 910, 1140
HpyCH4III	ACNGT	7 cut(s)	201, 301, 584, 727, 835, 1567, 1639
HpyCH4IV	ACGT	5 cut(s)	492, 1334, 1398, 1547, 2196
HpyF10VI	GCNNNNNNNGC	8 cut(s)	262, 284, 388, 853, 1199, 1445, 1515, 2156
HpySE526I	ACGT	5 cut(s)	492, 1334, 1398, 1547, 2196
Hsp92I	GRCGYC	1 cut(s)	1398
HspAI	GCGC	6 cut(s)	37, 39, 276, 1222, 1804, 1990
KspAI	GTTAAC	1 cut(s)	1504
LmnI	GCTCC	4 cut(s)	388, 430, 1001, 1987
LweI	GCATC	5 cut(s)	129, 201, 1741, 1838, 2161
MaeI	CTAG	1 cut(s)	1127
MaeII	ACGT	5 cut(s)	492, 1334, 1398, 1547, 2196
MaeIII	GTNAC	6 cut(s)	23, 1394, 1432, 1639, 1696, 2140
MboII	GAAGA	8 cut(s)	40, 68, 148, 932, 1034, 1158, 1195, 1730
MfeI	CAATTG	3 cut(s)	1197, 1385, 2154
MflI	RGATCY	4 cut(s)	45, 151, 1732, 1936
MhlI	GDGCHC	2 cut(s)	1422, 2152
MlsI	TGGCCA	1 cut(s)	969
MluNI	TGGCCA	1 cut(s)	969
MlyI	GAGTC	5 cut(s)	853, 1670, 1861, 1886, 1898
MmeI	TCCRAC	7 cut(s)	179, 220, 249, 345, 1728, 2148, 2179
Mox20I	TGGCCA	1 cut(s)	969
Mph1103I	ATGCAT	1 cut(s)	1321
MscI	TGGCCA	1 cut(s)	969
MseI	TTAA	9 cut(s)	564, 606, 1007, 1047, 1292, 1457, 1503, 1853, 2206
MslI	CAYNNNNRTG	3 cut(s)	32, 963, 1491
Msp20I	TGGCCA	1 cut(s)	969
MspI	CCGG	7 cut(s)	343, 386, 401, 427, 487, 506, 1069
MunI	CAATTG	3 cut(s)	1197, 1385, 2154
Mva1269I	GAATGC	2 cut(s)	1319, 1810
MvaI	CCWGG	5 cut(s)	176, 353, 669, 945, 2087
MvnI	CGCG	1 cut(s)	39
MwoI	GCNNNNNNNGC	8 cut(s)	262, 284, 388, 853, 1199, 1445, 1515, 2156
NciI	CCSGG	6 cut(s)	344, 401, 428, 506, 1069, 1070
NcoI	CCATGG	1 cut(s)	1486
NlaIV	GGNNCC	3 cut(s)	616, 784, 2011
NmuCI	GTSAC	6 cut(s)	23, 1394, 1432, 1639, 1696, 2140
NsbI	TGCGCA	1 cut(s)	1805
NsiI	ATGCAT	1 cut(s)	1321
NspI	RCATGY	1 cut(s)	553
PaeR7I	CTCGAG	1 cut(s)	1947
PagI	TCATGA	2 cut(s)	862, 1375
PauI	GCGCGC	1 cut(s)	37
PceI	AGGCCT	1 cut(s)	481
PciI	ACATGT	1 cut(s)	549
PcsI	WCGNNNNNNNCGW	1 cut(s)	305
PctI	GAATGC	2 cut(s)	1319, 1810
PfeI	GAWTC	5 cut(s)	170, 1011, 1026, 1472, 1843
PflMI	CCANNNNNTGG	1 cut(s)	792
PfoI	TCCNGGA	2 cut(s)	351, 943
PleI	GAGTC	5 cut(s)	853, 1669, 1861, 1885, 1897
PpsI	GAGTC	5 cut(s)	853, 1669, 1861, 1885, 1897
PscI	ACATGT	1 cut(s)	549
PsiI	TTATAA	1 cut(s)	761
Psp6I	CCWGG	5 cut(s)	174, 351, 667, 943, 2085
PspFI	CCCAGC	1 cut(s)	470
PspGI	CCWGG	5 cut(s)	174, 351, 667, 943, 2085
PspN4I	GGNNCC	3 cut(s)	616, 784, 2011
PspPI	GGNCC	2 cut(s)	783, 1235
PstI	CTGCAG	1 cut(s)	1469
PstNI	CAGNNNCTG	1 cut(s)	1700
PsuI	RGATCY	4 cut(s)	45, 151, 1732, 1936
PteI	GCGCGC	1 cut(s)	37
RsaI	GTAC	4 cut(s)	491, 515, 581, 2075
RsaNI	GTAC	4 cut(s)	490, 514, 580, 2074
RseI	CAYNNNNRTG	3 cut(s)	32, 963, 1491
SalI	GTCGAC	1 cut(s)	545
SaqAI	TTAA	9 cut(s)	564, 606, 1007, 1047, 1292, 1457, 1503, 1853, 2206
Sau96I	GGNCC	2 cut(s)	783, 1235
ScaI	AGTACT	1 cut(s)	515
SchI	GAGTC	5 cut(s)	853, 1670, 1861, 1886, 1898
SduI	GDGCHC	2 cut(s)	1422, 2152
SfaNI	GCATC	5 cut(s)	129, 201, 1741, 1838, 2161
SfcI	CTRYAG	1 cut(s)	1465
Sfr274I	CTCGAG	1 cut(s)	1947
SinI	GGWCC	1 cut(s)	1235
SlaI	CTCGAG	1 cut(s)	1947
SmaI	CCCGGG	1 cut(s)	1070
SmiMI	CAYNNNNRTG	3 cut(s)	32, 963, 1491
SmlI	CTYRAG	3 cut(s)	260, 1421, 1947
SmoI	CTYRAG	3 cut(s)	260, 1421, 1947
SseBI	AGGCCT	1 cut(s)	481
SspI	AATATT	2 cut(s)	638, 1355
SspMI	CTAG	1 cut(s)	1127
StuI	AGGCCT	1 cut(s)	481
StyI	CCWWGG	2 cut(s)	282, 1486
TaaI	ACNGT	7 cut(s)	201, 301, 584, 727, 835, 1567, 1639
TaiI	ACGT	5 cut(s)	495, 1337, 1401, 1550, 2199
TaqI	TCGA	8 cut(s)	498, 546, 651, 765, 1705, 1774, 1846, 1948
TaqII	GACCGA	2 cut(s)	701, 1142
TatI	WGTACW	2 cut(s)	513, 579
TauI	GCSGC	3 cut(s)	192, 290, 385
TfiI	GAWTC	5 cut(s)	170, 1011, 1026, 1472, 1843
Tru1I	TTAA	9 cut(s)	564, 606, 1007, 1047, 1292, 1457, 1503, 1853, 2206
Tru9I	TTAA	9 cut(s)	564, 606, 1007, 1047, 1292, 1457, 1503, 1853, 2206
TscAI	CASTG	6 cut(s)	732, 1026, 1572, 1642, 1701, 1989
TseFI	GTSAC	6 cut(s)	23, 1394, 1432, 1639, 1696, 2140
Tsp45I	GTSAC	6 cut(s)	23, 1394, 1432, 1639, 1696, 2140
TspDTI	ATGAA	9 cut(s)	56, 455, 768, 806, 892, 1364, 1379, 1395, 1682
TspGWI	ACGGA	1 cut(s)	103
TspMI	CCCGGG	1 cut(s)	1068
TspRI	CASTG	6 cut(s)	732, 1026, 1572, 1642, 1701, 1989
Van91I	CCANNNNNTGG	1 cut(s)	792
VpaK11BI	GGWCC	1 cut(s)	1235
XapI	RAATTY	2 cut(s)	755, 1616
XceI	RCATGY	1 cut(s)	553
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1339
XhoI	CTCGAG	1 cut(s)	1947
XmaI	CCCGGG	1 cut(s)	1068
XmiI	GTMKAC	4 cut(s)	546, 718, 993, 2115
XspI	CTAG	1 cut(s)	1127
ZraI	GACGTC	1 cut(s)	1399
ZrmI	AGTACT	1 cut(s)	515
Zsp2I	ATGCAT	1 cut(s)	1321

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.