Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0012504

Physical Location & Seq

Genomic Coordinates Forward (+)

18000075 .. 18000605

Gene Structure 531 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0193400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

ATGGAGGAGAAAAAGAAAACCCATCTCTTCTTTTCCATCACCTTCACTCTTCTCCTCTCCTTCTCCATCGCCCTTGACCACCAGACCCTCCTCCTCTCCCCCTTCCCATTTGCCCCTACTCTCCCCCAACCCAAATCCTTCTCCGCCACCTCCGAACCTGACCCAGATTCCATCTCCCTCCAACTCCACCACCTTGATGCCCTCTCCTCCAACCAAACCATCTCCCAGCTCTTCCACCTCTGCCTCCACCGCGACGCCCTCCGCTTCACCTCCTTCATCTCTCCCTCAACCGCATCGGCGTCGGCACTCCCCCTAAATACCTCTACATGGTCCTCGACACCGGCTCCAACGTCGTTTGGCTCCAGTGCACCCCCTGCAAACGCTGCTACTTGGACTCTAGGAGGTTGGATGATGGAGTCGAGGCAGGACCCAAAGCTGCAGTTGTTGATCCGGGCGAAGTTGGGGTCGTGGTGGGAGAATTCGGCGGCGATTTCTGAGGGGGTGATGAAGGAGAGTTTGGATCGCCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001676 GO:0003674 GO:0003824 GO:0003995 GO:0003997 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0006082 GO:0006629 GO:0006631 GO:0006635 GO:0008150 GO:0008152 GO:0009056 GO:0009062 GO:0009987 GO:0016042 GO:0016054 GO:0016491 GO:0016627 GO:0016634 GO:0019395 GO:0019752 GO:0030258 GO:0032787 GO:0033539 GO:0034440 GO:0036094 GO:0042579 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046395 GO:0048037 GO:0050660 GO:0050662 GO:0055114 GO:0071704 GO:0072329 GO:0097159 GO:1901265 GO:1901363 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00071 ko00592 ko01040 ko01100 ko01110 ko01212 ko03320 ko04024 ko04146 map00071 map00592 map01040 map01100 map01110 map01212 map03320 map04024 map04146

Pfam Domains

Protein Families

ACOX Acyl-CoA_dh_1 Acyl-CoA_dh_M

Protein Analysis

176

Amino Acids

19.37

Weight (kDa)

6.58

Isoelectric Point (pI)

53.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012504)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G65110 AT5G65110
fragaria_vesca	FvH4_1g21250
malus_domestica	MD01G1026400.v1.1 MD15G1327100.v1.1
prunus_persica	Prupe.6G181800_v2.0.a1
pyrus_communis	pycom01g05460 pycom395g00040
rosa_chinensis	RchiOBHm_Chr2g0115091
rosa_laevigata	RLG00000018156
rosa_multiflora	Rmu_sc0002784.1_g000002
rosa_roxburghii	Rroxscaffold_2G00130560
rosa_rugosa	Rorug02G0193300 Rorug02G0193400
rosa_samantha	Rh2AG251800 Rh2BG261400 Rh2CG256300 Rh2DG259900
rosa_wichuraiana	Rw2G019640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	252
AciI	CCGC	5 cut(s)	144, 250, 262, 291, 485
AclWI	GGATC	2 cut(s)	442, 528
AcsI	RAATTY	1 cut(s)	478
AcyI	GRCGYC	2 cut(s)	255, 299
AfiI	CCNNNNNNNGG	1 cut(s)	327
AjuI	GAANNNNNNNTTGG	1 cut(s)	500
AluBI	AGCT	2 cut(s)	229, 436
AluI	AGCT	2 cut(s)	229, 436
Alw21I	GWGCWC	1 cut(s)	370
Alw44I	GTGCAC	1 cut(s)	366
AlwI	GGATC	2 cut(s)	442, 528
ApaLI	GTGCAC	1 cut(s)	366
ApeKI	GCWGC	2 cut(s)	383, 436
ApoI	RAATTY	1 cut(s)	478
ArsI	GACNNNNNNTTYG	2 cut(s)	449, 481
AspS9I	GGNCC	2 cut(s)	330, 427
AsuC2I	CCSGG	1 cut(s)	452
AsuHPI	GGTGA	3 cut(s)	31, 259, 514
AvaII	GGWCC	2 cut(s)	330, 427
BaeGI	GKGCMC	1 cut(s)	370
Bbv12I	GWGCWC	1 cut(s)	370
BbvI	GCAGC	2 cut(s)	370, 423
BccI	CCATC	6 cut(s)	30, 44, 74, 179, 227, 406
BceAI	ACGGC	1 cut(s)	510
BcgI	CGANNNNNNTGC	2 cut(s)	282, 316
BcnI	CCSGG	1 cut(s)	452
BfaI	CTAG	1 cut(s)	398
BfmI	CTRYAG	1 cut(s)	437
BisI	GCNGC	3 cut(s)	384, 437, 486
BlsI	GCNGC	3 cut(s)	385, 438, 487
Bme1390I	CCNGG	1 cut(s)	452
Bme18I	GGWCC	2 cut(s)	330, 427
BmgT120I	GGNCC	2 cut(s)	330, 427
BmiI	GGNNCC	3 cut(s)	345, 361, 429
BmrFI	CCNGG	1 cut(s)	452
BmsI	GCATC	2 cut(s)	187, 302
BpmI	CTGGAG	1 cut(s)	346
BpuMI	CCSGG	1 cut(s)	452
BsaHI	GRCGYC	2 cut(s)	255, 299
BsaXI	ACNNNNNCTCC	2 cut(s)	328, 358
Bsc4I	CCNNNNNNNGG	1 cut(s)	327
Bse118I	RCCGGY	1 cut(s)	340
Bse1I	ACTGG	1 cut(s)	363
BseGI	GGATG	1 cut(s)	414
BseLI	CCNNNNNNNGG	1 cut(s)	327
BseMII	CTCAG	1 cut(s)	486
BseNI	ACTGG	1 cut(s)	363
BseRI	GAGGAG	5 cut(s)	20, 44, 80, 83, 196
BseSI	GKGCMC	1 cut(s)	370
BseXI	GCAGC	2 cut(s)	370, 423
BseYI	CCCAGC	1 cut(s)	225
Bsh1236I	CGCG	1 cut(s)	252
BsiHKAI	GWGCWC	1 cut(s)	370
BsiSI	CCGG	2 cut(s)	341, 451
BslI	CCNNNNNNNGG	1 cut(s)	327
Bsp1286I	GDGCHC	1 cut(s)	370
Bsp143I	GATC	2 cut(s)	447, 520
BspACI	CCGC	5 cut(s)	144, 250, 262, 291, 485
BspCNI	CTCAG	1 cut(s)	487
BspFNI	CGCG	1 cut(s)	252
BspLI	GGNNCC	3 cut(s)	345, 361, 429
BspMAI	CTGCAG	1 cut(s)	441
BspPI	GGATC	2 cut(s)	442, 528
BspQI	GCTCTTC	1 cut(s)	236
BsrFI	RCCGGY	1 cut(s)	340
BsrI	ACTGG	1 cut(s)	363
BssAI	RCCGGY	1 cut(s)	340
BssMI	GATC	2 cut(s)	447, 520
BssNI	GRCGYC	2 cut(s)	255, 299
Bst6I	CTCTTC	3 cut(s)	32, 54, 236
BstACI	GRCGYC	2 cut(s)	255, 299
BstAPI	GCANNNNNTGC	2 cut(s)	374, 383
BstDEI	CTNAG	1 cut(s)	495
BstF5I	GGATG	1 cut(s)	414
BstFNI	CGCG	1 cut(s)	252
BstKTI	GATC	2 cut(s)	450, 523
BstMBI	GATC	2 cut(s)	447, 520
BstMWI	GCNNNNNNNGC	3 cut(s)	249, 374, 383
BstSCI	CCNGG	1 cut(s)	450
BstSFI	CTRYAG	1 cut(s)	437
BstSLI	GKGCMC	1 cut(s)	370
BstUI	CGCG	1 cut(s)	252
BstV1I	GCAGC	2 cut(s)	370, 423
BtgZI	GCGATG	1 cut(s)	52
BtsCI	GGATG	1 cut(s)	414
BtsIMutI	CAGTG	1 cut(s)	370
Cfr10I	RCCGGY	1 cut(s)	340
Cfr13I	GGNCC	2 cut(s)	330, 427
CseI	GACGC	2 cut(s)	263, 288
CviAII	CATG	1 cut(s)	327
CviJI	RGCY	4 cut(s)	229, 344, 360, 436
CviKI_1	RGCY	4 cut(s)	229, 344, 360, 436
DdeI	CTNAG	1 cut(s)	495
DpnI	GATC	2 cut(s)	449, 522
DpnII	GATC	2 cut(s)	447, 520
Eam1104I	CTCTTC	3 cut(s)	32, 54, 236
EarI	CTCTTC	3 cut(s)	32, 54, 236
EciI	GGCGGA	1 cut(s)	133
Eco47I	GGWCC	2 cut(s)	330, 427
EcoO109I	RGGNCCY	1 cut(s)	427
EcoRI	GAATTC	1 cut(s)	478
FaeI	CATG	1 cut(s)	330
FaiI	YATR	1 cut(s)	328
FatI	CATG	1 cut(s)	326
Fnu4HI	GCNGC	3 cut(s)	384, 437, 486
FokI	GGATG	1 cut(s)	421
Fsp4HI	GCNGC	3 cut(s)	384, 437, 486
FspBI	CTAG	1 cut(s)	398
GluI	GCNGC	3 cut(s)	384, 437, 486
GsaI	CCCAGC	1 cut(s)	229
GsuI	CTGGAG	1 cut(s)	346
HapII	CCGG	2 cut(s)	341, 451
HgaI	GACGC	2 cut(s)	263, 288
Hin1I	GRCGYC	2 cut(s)	255, 299
Hin1II	CATG	1 cut(s)	330
HinfI	GANTC	3 cut(s)	167, 394, 416
HpaII	CCGG	2 cut(s)	341, 451
HphI	GGTGA	3 cut(s)	31, 259, 514
Hpy166II	GTNNAC	1 cut(s)	368
Hpy188I	TCNGA	2 cut(s)	154, 496
Hpy8I	GTNNAC	1 cut(s)	368
Hpy99I	CGWCG	3 cut(s)	257, 304, 355
HpyAV	CCTTC	6 cut(s)	52, 70, 112, 148, 283, 502
HpyCH4IV	ACGT	1 cut(s)	350
HpyCH4V	TGCA	3 cut(s)	368, 377, 439
HpyF10VI	GCNNNNNNNGC	3 cut(s)	249, 374, 383
HpyF3I	CTNAG	1 cut(s)	495
HpySE526I	ACGT	1 cut(s)	350
Hsp92I	GRCGYC	2 cut(s)	255, 299
Hsp92II	CATG	1 cut(s)	330
Kzo9I	GATC	2 cut(s)	447, 520
LguI	GCTCTTC	1 cut(s)	236
LmnI	GCTCC	2 cut(s)	349, 365
LpnPI	CCDG	9 cut(s)	95, 171, 177, 239, 354, 376, 387, 410, 464
Lsp1109I	GCAGC	2 cut(s)	370, 423
LweI	GCATC	2 cut(s)	187, 302
MaeI	CTAG	1 cut(s)	398
MaeII	ACGT	1 cut(s)	350
MalI	GATC	2 cut(s)	449, 522
MboI	GATC	2 cut(s)	447, 520
MboII	GAAGA	3 cut(s)	19, 41, 223
MhlI	GDGCHC	1 cut(s)	370
MluCI	AATT	1 cut(s)	478
MlyI	GAGTC	2 cut(s)	388, 425
MmeI	TCCRAC	4 cut(s)	205, 234, 371, 386
MslI	CAYNNNNRTG	1 cut(s)	195
MspI	CCGG	2 cut(s)	341, 451
MspR9I	CCNGG	1 cut(s)	452
MvnI	CGCG	1 cut(s)	252
MwoI	GCNNNNNNNGC	3 cut(s)	249, 374, 383
NciI	CCSGG	1 cut(s)	452
NdeII	GATC	2 cut(s)	447, 520
NlaIII	CATG	1 cut(s)	330
NlaIV	GGNNCC	3 cut(s)	345, 361, 429
PciSI	GCTCTTC	1 cut(s)	236
PfeI	GAWTC	1 cut(s)	167
PkrI	GCNGC	3 cut(s)	385, 438, 487
PleI	GAGTC	2 cut(s)	388, 424
PpsI	GAGTC	2 cut(s)	388, 424
PpuMI	RGGWCCY	1 cut(s)	427
Psp5II	RGGWCCY	1 cut(s)	427
PspFI	CCCAGC	1 cut(s)	225
PspN4I	GGNNCC	3 cut(s)	345, 361, 429
PspPI	GGNCC	2 cut(s)	330, 427
PspPPI	RGGWCCY	1 cut(s)	427
PstI	CTGCAG	1 cut(s)	441
RseI	CAYNNNNRTG	1 cut(s)	195
SapI	GCTCTTC	1 cut(s)	236
SatI	GCNGC	3 cut(s)	384, 437, 486
Sau3AI	GATC	2 cut(s)	447, 520
Sau96I	GGNCC	2 cut(s)	330, 427
SchI	GAGTC	2 cut(s)	388, 425
ScrFI	CCNGG	1 cut(s)	452
SduI	GDGCHC	1 cut(s)	370
SfaNI	GCATC	2 cut(s)	187, 302
SfcI	CTRYAG	1 cut(s)	437
SinI	GGWCC	2 cut(s)	330, 427
SmiMI	CAYNNNNRTG	1 cut(s)	195
Sse9I	AATT	1 cut(s)	478
SsiI	CCGC	5 cut(s)	144, 250, 262, 291, 485
SspMI	CTAG	1 cut(s)	398
StyD4I	CCNGG	1 cut(s)	450
TaiI	ACGT	1 cut(s)	353
TaqI	TCGA	2 cut(s)	335, 419
TasI	AATT	1 cut(s)	478
TauI	GCSGC	1 cut(s)	488
TfiI	GAWTC	1 cut(s)	167
TscAI	CASTG	1 cut(s)	370
TseI	GCWGC	2 cut(s)	383, 436
TspDTI	ATGAA	2 cut(s)	265, 521
TspRI	CASTG	1 cut(s)	370
VneI	GTGCAC	1 cut(s)	366
VpaK11BI	GGWCC	2 cut(s)	330, 427
XapI	RAATTY	1 cut(s)	478
XspI	CTAG	1 cut(s)	398

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.