Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0012504

Physical Location & Seq

Genomic Coordinates Forward (+)

17999232 .. 17999753

Gene Structure 522 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0193300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

ATGGAGAATCAGCTGTACTGCAAGGTCACCGTTTATCTCAACTCATTGACCTCCATTGGGGACTCCGATTTGGAGTCGTTTCTCAAAGCCAAGCAGTATTACAATCGACTCGACCGCGTCCGGAAGCGAAGCTTCTTGCTTTACGGCCCCTCCGGCACCGGGAAATCCAGCTTCGTTGCCGCCATGGCCAATTTCCTCGGTTACGACGTCTACGATCTCGACCTCTCTAGGGTTAAAGACGACTCGGAGTTGAAGATGCTTCTTTTCCAGACTACGAGCAAGTCGGTGATCCTCATCGAGGACTTGGATCGGTTCTTCGCCGAGAAATCGACGGTGGTCAGCTTCTCCGGCATATTGAACTTCATGGACGGCTTGCTCAAATCGTGCTGCGCCGAAGAGAGAGTCATGACGAGGTTGATGAGATTCGGAGCCTCTGCGCTTTCGTTGTGCTGGGTATACGATTTTGGAAGAACAAAAAATTCTGGGTATATGTTTAGCAATGGGGGCTTAATGGGAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001676 GO:0003674 GO:0003824 GO:0003995 GO:0003997 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0006082 GO:0006629 GO:0006631 GO:0006635 GO:0008150 GO:0008152 GO:0009056 GO:0009062 GO:0009987 GO:0016042 GO:0016054 GO:0016491 GO:0016627 GO:0016634 GO:0019395 GO:0019752 GO:0030258 GO:0032787 GO:0033539 GO:0034440 GO:0036094 GO:0042579 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046395 GO:0048037 GO:0050660 GO:0050662 GO:0055114 GO:0071704 GO:0072329 GO:0097159 GO:1901265 GO:1901363 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00071 ko00592 ko01040 ko01100 ko01110 ko01212 ko03320 ko04024 ko04146 map00071 map00592 map01040 map01100 map01110 map01212 map03320 map04024 map04146

Pfam Domains

Protein Families

ACOX Acyl-CoA_dh_1 Acyl-CoA_dh_M

Protein Analysis

173

Amino Acids

19.57

Weight (kDa)

8.62

Isoelectric Point (pI)

30.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA	PF00004	46 - 128	7.9e-11	ATPase family associated with various cellular activities (AAA)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012504)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G65110 AT5G65110
fragaria_vesca	FvH4_1g21250
malus_domestica	MD01G1026400.v1.1 MD15G1327100.v1.1
prunus_persica	Prupe.6G181800_v2.0.a1
pyrus_communis	pycom01g05460 pycom395g00040
rosa_chinensis	RchiOBHm_Chr2g0115091
rosa_laevigata	RLG00000018156
rosa_multiflora	Rmu_sc0002784.1_g000002
rosa_roxburghii	Rroxscaffold_2G00130560
rosa_rugosa	Rorug02G0193300 Rorug02G0193400
rosa_samantha	Rh2AG251800 Rh2BG261400 Rh2CG256300 Rh2DG259900
rosa_wichuraiana	Rw2G019640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	210
AccB1I	GGYRCC	1 cut(s)	155
AccI	GTMKAC	2 cut(s)	210, 456
AccII	CGCG	1 cut(s)	117
AccIII	TCCGGA	1 cut(s)	120
AciI	CCGC	2 cut(s)	115, 180
AclWI	GGATC	2 cut(s)	283, 315
AcoI	YGGCCR	1 cut(s)	186
AcsI	RAATTY	1 cut(s)	478
AcyI	GRCGYC	1 cut(s)	207
AfaI	GTAC	1 cut(s)	17
AfiI	CCNNNNNNNGG	4 cut(s)	57, 159, 229, 298
AgsI	TTSAA	2 cut(s)	253, 358
AluBI	AGCT	4 cut(s)	13, 132, 171, 342
AluI	AGCT	4 cut(s)	13, 132, 171, 342
AlwI	GGATC	2 cut(s)	283, 315
Aor13HI	TCCGGA	1 cut(s)	120
AoxI	GGCC	2 cut(s)	145, 186
ApeKI	GCWGC	1 cut(s)	387
ApoI	RAATTY	1 cut(s)	478
ArsI	GACNNNNNNTTYG	2 cut(s)	387, 419
AspLEI	GCGC	2 cut(s)	392, 439
AspS9I	GGNCC	1 cut(s)	146
AsuC2I	CCSGG	1 cut(s)	160
AsuHPI	GGTGA	2 cut(s)	19, 298
BalI	TGGCCA	1 cut(s)	188
BanI	GGYRCC	1 cut(s)	155
BbvI	GCAGC	1 cut(s)	374
BceAI	ACGGC	2 cut(s)	160, 385
BcnI	CCSGG	1 cut(s)	160
BfaI	CTAG	1 cut(s)	228
BglI	GCCNNNNNGGC	2 cut(s)	153, 185
BisI	GCNGC	2 cut(s)	180, 388
BlsI	GCNGC	2 cut(s)	181, 389
Bme1390I	CCNGG	1 cut(s)	160
BmgT120I	GGNCC	1 cut(s)	146
BmiI	GGNNCC	3 cut(s)	148, 157, 430
BmrFI	CCNGG	1 cut(s)	160
BmsI	GCATC	1 cut(s)	246
BoxI	GACNNNNGTC	1 cut(s)	335
BpuMI	CCSGG	1 cut(s)	160
BsaBI	GATNNNNATC	1 cut(s)	293
BsaHI	GRCGYC	1 cut(s)	207
BsaJI	CCNNGG	2 cut(s)	183, 196
BsaWI	WCCGGW	1 cut(s)	120
BsaXI	ACNNNNNCTCC	2 cut(s)	134, 164
Bsc4I	CCNNNNNNNGG	4 cut(s)	57, 159, 229, 298
Bse3DI	GCAATG	1 cut(s)	505
Bse8I	GATNNNNATC	1 cut(s)	293
BseAI	TCCGGA	1 cut(s)	120
BseDI	CCNNGG	2 cut(s)	183, 196
BseJI	GATNNNNATC	1 cut(s)	293
BseLI	CCNNNNNNNGG	4 cut(s)	57, 159, 229, 298
BseMI	GCAATG	1 cut(s)	505
BseXI	GCAGC	1 cut(s)	374
BseYI	CCCAGC	1 cut(s)	450
Bsh1236I	CGCG	1 cut(s)	117
Bsh1285I	CGRYCG	1 cut(s)	115
BshFI	GGCC	2 cut(s)	147, 188
BshNI	GGYRCC	1 cut(s)	155
BsiEI	CGRYCG	1 cut(s)	115
BsiSI	CCGG	4 cut(s)	121, 153, 159, 348
BslFI	GGGAC	1 cut(s)	74
BslI	CCNNNNNNNGG	4 cut(s)	57, 159, 229, 298
BsmFI	GGGAC	1 cut(s)	74
BsnI	GGCC	2 cut(s)	147, 188
Bsp13I	TCCGGA	1 cut(s)	120
Bsp143I	GATC	3 cut(s)	214, 288, 307
Bsp19I	CCATGG	1 cut(s)	183
BspACI	CCGC	2 cut(s)	115, 180
BspANI	GGCC	2 cut(s)	147, 188
BspEI	TCCGGA	1 cut(s)	120
BspFNI	CGCG	1 cut(s)	117
BspHI	TCATGA	1 cut(s)	405
BspLI	GGNNCC	3 cut(s)	148, 157, 430
BspPI	GGATC	2 cut(s)	283, 315
BspT107I	GGYRCC	1 cut(s)	155
BsrDI	GCAATG	1 cut(s)	505
BssECI	CCNNGG	2 cut(s)	183, 196
BssMI	GATC	3 cut(s)	214, 288, 307
BssNAI	GTATAC	1 cut(s)	457
BssNI	GRCGYC	1 cut(s)	207
BssT1I	CCWWGG	1 cut(s)	183
Bst1107I	GTATAC	1 cut(s)	457
Bst4CI	ACNGT	2 cut(s)	31, 334
Bst6I	CTCTTC	1 cut(s)	390
BstACI	GRCGYC	1 cut(s)	207
BstC8I	GCNNGC	1 cut(s)	374
BstDSI	CCRYGG	1 cut(s)	183
BstEII	GGTNACC	1 cut(s)	25
BstENI	CCTNNNNNAGG	1 cut(s)	296
BstFNI	CGCG	1 cut(s)	117
BstHHI	GCGC	2 cut(s)	392, 439
BstKTI	GATC	3 cut(s)	217, 291, 310
BstMBI	GATC	3 cut(s)	214, 288, 307
BstMCI	CGRYCG	1 cut(s)	115
BstMWI	GCNNNNNNNGC	4 cut(s)	153, 185, 348, 504
BstPAI	GACNNNNGTC	1 cut(s)	335
BstPI	GGTNACC	1 cut(s)	25
BstSCI	CCNGG	1 cut(s)	158
BstUI	CGCG	1 cut(s)	117
BstV1I	GCAGC	1 cut(s)	374
BstZ17I	GTATAC	1 cut(s)	457
BsuRI	GGCC	2 cut(s)	147, 188
BtgI	CCRYGG	1 cut(s)	183
Cac8I	GCNNGC	1 cut(s)	374
CciI	TCATGA	1 cut(s)	405
CfoI	GCGC	2 cut(s)	392, 439
Cfr13I	GGNCC	1 cut(s)	146
CseI	GACGC	1 cut(s)	106
Csp6I	GTAC	1 cut(s)	16
CviAII	CATG	3 cut(s)	184, 364, 406
CviQI	GTAC	1 cut(s)	16
DpnI	GATC	3 cut(s)	216, 290, 309
DpnII	GATC	3 cut(s)	214, 288, 307
EaeI	YGGCCR	1 cut(s)	186
Eam1104I	CTCTTC	1 cut(s)	390
EarI	CTCTTC	1 cut(s)	390
Eco130I	CCWWGG	1 cut(s)	183
Eco91I	GGTNACC	1 cut(s)	25
EcoNI	CCTNNNNNAGG	1 cut(s)	296
EcoO65I	GGTNACC	1 cut(s)	25
EcoT14I	CCWWGG	1 cut(s)	183
ErhI	CCWWGG	1 cut(s)	183
FaeI	CATG	3 cut(s)	187, 367, 409
FaiI	YATR	7 cut(s)	185, 353, 365, 407, 457, 489, 491
FalI	AAGNNNNNCTT	2 cut(s)	116, 148
FaqI	GGGAC	1 cut(s)	74
FatI	CATG	3 cut(s)	183, 363, 405
FblI	GTMKAC	2 cut(s)	210, 456
Fnu4HI	GCNGC	2 cut(s)	180, 388
Fsp4HI	GCNGC	2 cut(s)	180, 388
FspBI	CTAG	1 cut(s)	228
GlaI	GCGC	2 cut(s)	391, 438
GluI	GCNGC	2 cut(s)	180, 388
GsaI	CCCAGC	1 cut(s)	454
HaeIII	GGCC	2 cut(s)	147, 188
HapII	CCGG	4 cut(s)	121, 153, 159, 348
HgaI	GACGC	1 cut(s)	106
HhaI	GCGC	2 cut(s)	392, 439
Hin1I	GRCGYC	1 cut(s)	207
Hin1II	CATG	3 cut(s)	187, 367, 409
Hin6I	GCGC	2 cut(s)	390, 437
HinP1I	GCGC	2 cut(s)	390, 437
HindIII	AAGCTT	1 cut(s)	130
HinfI	GANTC	7 cut(s)	7, 62, 74, 108, 242, 402, 423
HpaII	CCGG	4 cut(s)	121, 153, 159, 348
HphI	GGTGA	2 cut(s)	19, 298
Hpy166II	GTNNAC	2 cut(s)	211, 457
Hpy188I	TCNGA	3 cut(s)	67, 247, 428
Hpy188III	TCNNGA	4 cut(s)	121, 218, 268, 406
Hpy8I	GTNNAC	2 cut(s)	211, 457
Hpy99I	CGWCG	2 cut(s)	209, 334
HpyCH4III	ACNGT	2 cut(s)	31, 334
HpyCH4IV	ACGT	1 cut(s)	207
HpyCH4V	TGCA	1 cut(s)	21
HpyF10VI	GCNNNNNNNGC	4 cut(s)	153, 185, 348, 504
HpySE526I	ACGT	1 cut(s)	207
Hsp92I	GRCGYC	1 cut(s)	207
Hsp92II	CATG	3 cut(s)	187, 367, 409
HspAI	GCGC	2 cut(s)	390, 437
Kpn2I	TCCGGA	1 cut(s)	120
Kzo9I	GATC	3 cut(s)	214, 288, 307
LmnI	GCTCC	1 cut(s)	428
LpnPI	CCDG	8 cut(s)	134, 166, 172, 181, 281, 361, 436, 468
Lsp1109I	GCAGC	1 cut(s)	374
LweI	GCATC	1 cut(s)	246
MaeI	CTAG	1 cut(s)	228
MaeII	ACGT	1 cut(s)	207
MaeIII	GTNAC	2 cut(s)	25, 200
MalI	GATC	3 cut(s)	216, 290, 309
MboI	GATC	3 cut(s)	214, 288, 307
MboII	GAAGA	4 cut(s)	265, 307, 407, 480
MlsI	TGGCCA	1 cut(s)	188
MluCI	AATT	2 cut(s)	190, 478
MluNI	TGGCCA	1 cut(s)	188
MlyI	GAGTC	5 cut(s)	56, 83, 102, 236, 411
MnlI	CCTC	8 cut(s)	61, 160, 206, 233, 292, 302, 405, 442
Mox20I	TGGCCA	1 cut(s)	188
MroI	TCCGGA	1 cut(s)	120
MscI	TGGCCA	1 cut(s)	188
MseI	TTAA	2 cut(s)	234, 509
Msp20I	TGGCCA	1 cut(s)	188
MspA1I	CMGCKG	1 cut(s)	13
MspI	CCGG	4 cut(s)	121, 153, 159, 348
MspR9I	CCNGG	1 cut(s)	160
MvnI	CGCG	1 cut(s)	117
MwoI	GCNNNNNNNGC	4 cut(s)	153, 185, 348, 504
NciI	CCSGG	1 cut(s)	160
NcoI	CCATGG	1 cut(s)	183
NdeII	GATC	3 cut(s)	214, 288, 307
NlaIII	CATG	3 cut(s)	187, 367, 409
NlaIV	GGNNCC	3 cut(s)	148, 157, 430
NmeAIII	GCCGAG	1 cut(s)	346
NmuCI	GTSAC	1 cut(s)	25
PagI	TCATGA	1 cut(s)	405
PcsI	WCGNNNNNNNCGW	2 cut(s)	204, 210
PfeI	GAWTC	2 cut(s)	7, 423
PflFI	GACNNNGTC	1 cut(s)	116
PkrI	GCNGC	2 cut(s)	181, 389
PleI	GAGTC	5 cut(s)	56, 82, 102, 236, 410
PpsI	GAGTC	5 cut(s)	56, 82, 102, 236, 410
PshAI	GACNNNNGTC	1 cut(s)	335
PspEI	GGTNACC	1 cut(s)	25
PspFI	CCCAGC	1 cut(s)	450
PspN4I	GGNNCC	3 cut(s)	148, 157, 430
PspPI	GGNCC	1 cut(s)	146
PsyI	GACNNNGTC	1 cut(s)	116
PvuII	CAGCTG	1 cut(s)	13
RsaI	GTAC	1 cut(s)	17
RsaNI	GTAC	1 cut(s)	16
SaqAI	TTAA	2 cut(s)	234, 509
SatI	GCNGC	2 cut(s)	180, 388
Sau3AI	GATC	3 cut(s)	214, 288, 307
Sau96I	GGNCC	1 cut(s)	146
SchI	GAGTC	5 cut(s)	56, 83, 102, 236, 411
ScrFI	CCNGG	1 cut(s)	160
SetI	ASST	9 cut(s)	15, 27, 53, 134, 173, 210, 225, 344, 416
SfaNI	GCATC	1 cut(s)	246
Sse9I	AATT	2 cut(s)	190, 478
SsiI	CCGC	2 cut(s)	115, 180
SspMI	CTAG	1 cut(s)	228
StyD4I	CCNGG	1 cut(s)	158
StyI	CCWWGG	1 cut(s)	183
TaaI	ACNGT	2 cut(s)	31, 334
TaiI	ACGT	1 cut(s)	210
TaqI	TCGA	5 cut(s)	106, 111, 219, 297, 329
TasI	AATT	2 cut(s)	190, 478
TatI	WGTACW	1 cut(s)	15
TauI	GCSGC	1 cut(s)	182
TfiI	GAWTC	2 cut(s)	7, 423
Tru1I	TTAA	2 cut(s)	234, 509
Tru9I	TTAA	2 cut(s)	234, 509
TseFI	GTSAC	1 cut(s)	25
TseI	GCWGC	1 cut(s)	387
Tsp45I	GTSAC	1 cut(s)	25
TspDTI	ATGAA	1 cut(s)	352
Tth111I	GACNNNGTC	1 cut(s)	116
XagI	CCTNNNNNAGG	1 cut(s)	296
XapI	RAATTY	1 cut(s)	478
XmiI	GTMKAC	2 cut(s)	210, 456
XspI	CTAG	1 cut(s)	228
ZraI	GACGTC	1 cut(s)	208

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.