Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0012504

Physical Location & Seq

Genomic Coordinates Forward (+)

26189882 .. 26196759

Gene Structure 6878 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000018156

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1995 bp

ATGCAGACCCGGAACCCAGATCCAACGGCGGAGGACGACTCTCAGTCCGCCGCGCGGCGCATCCAACAGCTGTCCCTCCACCTGACGCCGGCCGCGATTTCACCTTACGACCACCGCCAAATCTCGCGGCTGGAGTGCGCCAAGGCGGCGGCGAAGCTGAATGTGGACACGAAGAGTCTGTCGAGCTACATGAGAGGAAAGCACAGAGAAATCCAAGATAAGGTTATGGACTACTTCAACAACAGGCCTGACCTTCAGACTCCGGTGGAGATTTTGAAGGACGATCACCGCGAGCTTTGTATGAGGCAGCTTACCGGTTTGGTTAGGGAGGCCGGAATCAGACCGTTCCGGTACGTCGTCGAAGATCCGGCCAAGTACTTTGCGGTTCTGGAAGCCGTGGGCAGCGTCGACATGTCGCTTGGGATCAAGATGGGGGTGCAGTACAGCATAGTTGGATTGCTTTCAGCTGAAAAGAGATCCTACAATGGCTCAAATGTTCAAGGTCTACAAACAATGGCAACATTTGATCCGATCACAGATGAGTTTGTAATTGACACACCAAATGATGGGGCCATTAAATGGTGGATTGGCAATGCTGCTGTTCATGGCAAGTTTGCCACTGTTTTTGCTAAGCTGATGTTGCCAACACATGATAAAAGAGGAGTATCTGATATGGGTGTCCACGCCTTCATTGTACCAATAAGGGATATGAAGACTCATCAAACTCTTCCAGGAATCGAGATAAACGATTGTGGCCATAAGGTTGGTCTGAATGGGGTGGACAATGGAGCATTAAGATTCCGTGCAGTGAGAATCCCTCGTGATAATCTTCTTAATCGCTTTGGAGATGTCTCTCGGGATGGTAAATACACAAGTAGCCTACCATCTATAAATAAAAGATTTGCTGCCACACTAGGAGAACTTGTAGGTGGGAGGGTCGGCCTTGCATATTCTTCAGGCAGTGTCTTGAAGGTTGCTGGCACAATTGCAATCCGATATTCTCTACTGCGTCAGCAGTTTGGTCCTCCAAAGCAACCTGAAGTCAGTATTCTTGATTACCAATCCCAGCAGCACAAGTTAATGCCAATGCTGGCTTCAACTTACGCATTCCATTTTGCCACACTGCATTTGGTGGAGAAATATTCAGAGATGAAGAAGACTCATGATGAACAATTGGTTGCAGATGTCCATTCTCTTTCAGCAGGGCTCAAGGCTTATGTGACGTCATATACAGCAAAGTCATTGAGTATCTGTAGGGAAGCTTGTGGAGGCCATGGGTACGCTGCTGTCAACCGCTTTGGCAGTTTGAGGAATGACCATGACATTTTTCAGACATTCGAAGGGGACAACACGGTGCTTCTACAGCAGGTAGCAGGTGATCTGTTGAAGCAATACAAGGAAAAGTTTCAAGGCGGGACACTCACAGTTACCTGGAACTACCTTAGAGAATCCATGAACTCATACCTATCTCAGCCAAATCCGGTGACTGCTCGATGGGAAAGTGAAGACCATTTGCGAGATCCAAAGTTCCAGTTGGATGCTTTCAGATACCGAACTTCTCGACTACTTCAAAGTGTTGCTGTTAGACTTCGCAAGCACTCTAAAACTCTTGGAAGTTTTGGCGCTTGGAATAGATGCTTAAACCACCTTTTGACACTTGCAGAGTCCCATATTGAATCTGTCGTCCTTGCCAAGTTTATAGAAGCTGTGCAGAACTGTCCGGATGCAAGTTCTCGAGCAGCTCTGAAACTCGTCTGTGATCTTTATGCCTTGGATCGAATATGGAAAGACATAGGAACCTATCGTAATGTTGATTATGTTGCACCAAACAAAGCTAAGGCAATCCACAAGCTCACTGCATACCTGAGTTTCCGAGTGAGAAATATAGCAGGGGAACTCATAGACGCATTTGATATTCCAGATTATGTTACGCGTGCCCCAATTGCAATGCAGTCAGATGCCTACTCTCAGTACACACAGCATGTGGGATTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001676 GO:0003674 GO:0003824 GO:0003995 GO:0003997 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0006082 GO:0006629 GO:0006631 GO:0006635 GO:0008150 GO:0008152 GO:0009056 GO:0009062 GO:0009987 GO:0016042 GO:0016054 GO:0016491 GO:0016627 GO:0016634 GO:0019395 GO:0019752 GO:0030258 GO:0032787 GO:0033539 GO:0034440 GO:0036094 GO:0042579 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046395 GO:0048037 GO:0050660 GO:0050662 GO:0055114 GO:0071704 GO:0072329 GO:0097159 GO:1901265 GO:1901363 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00071 ko00592 ko01040 ko01100 ko01110 ko01212 ko03320 ko04024 ko04146 map00071 map00592 map01040 map01100 map01110 map01212 map03320 map04024 map04146

Pfam Domains

Protein Families

ACOX Acyl-CoA_dh_1 Acyl-CoA_dh_M

Protein Analysis

665

Amino Acids

74.36

Weight (kDa)

9.07

Isoelectric Point (pI)

39.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Acyl-CoA_dh_M	PF02770	162 - 270	1.2e-07	Acyl-CoA dehydrogenase, middle domain
Acyl-CoA_dh_1	PF00441	303 - 459	3e-09	Acyl-CoA dehydrogenase, C-terminal domain
ACOX_C_alpha1	PF22924	306 - 461	2.7e-50	Acyl-CoA oxidase, C-alpha1 domain
ACOX	PF01756	507 - 660	5.5e-24	Acyl-CoA oxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0012504)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G65110 AT5G65110
fragaria_vesca	FvH4_1g21250
malus_domestica	MD01G1026400.v1.1 MD15G1327100.v1.1
prunus_persica	Prupe.6G181800_v2.0.a1
pyrus_communis	pycom01g05460 pycom395g00040
rosa_chinensis	RchiOBHm_Chr2g0115091
rosa_laevigata	RLG00000018156
rosa_multiflora	Rmu_sc0002784.1_g000002
rosa_roxburghii	Rroxscaffold_2G00130560
rosa_rugosa	Rorug02G0193300 Rorug02G0193400
rosa_samantha	Rh2AG251800 Rh2BG261400 Rh2CG256300 Rh2DG259900
rosa_wichuraiana	Rw2G019640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1364
AatII	GACGTC	1 cut(s)	1226
Acc36I	ACCTGC	2 cut(s)	1357, 1364
AccB7I	CCANNNNNTGG	2 cut(s)	566, 579
AccI	GTMKAC	2 cut(s)	408, 505
AccII	CGCG	6 cut(s)	53, 55, 95, 127, 291, 1933
AccIII	TCCGGA	1 cut(s)	1720
AclWI	GGATC	7 cut(s)	14, 359, 431, 471, 521, 1514, 1782
AcoI	YGGCCR	3 cut(s)	90, 369, 754
AcuI	CTGAAG	3 cut(s)	239, 939, 1059
AcyI	GRCGYC	2 cut(s)	86, 1223
AfaI	GTAC	6 cut(s)	353, 377, 443, 696, 1280, 1973
AfiI	CCNNNNNNNGG	5 cut(s)	54, 88, 220, 566, 579
AflIII	ACRYGT	2 cut(s)	411, 1931
AgeI	ACCGGT	1 cut(s)	314
AgsI	TTSAA	9 cut(s)	238, 277, 500, 970, 1098, 1387, 1409, 1571, 1676
AhdI	GACNNNNNGTC	1 cut(s)	43
AjnI	CCWGG	2 cut(s)	730, 1430
AjuI	GAANNNNNNNTTGG	2 cut(s)	1078, 1110
Alw26I	GTCTC	1 cut(s)	856
AlwI	GGATC	7 cut(s)	14, 359, 431, 471, 521, 1514, 1782
Ama87I	CYCGRG	2 cut(s)	855, 1734
Aor13HI	TCCGGA	1 cut(s)	1720
AoxI	GGCC	8 cut(s)	90, 245, 330, 369, 570, 754, 940, 1270
ApeKI	GCWGC	7 cut(s)	307, 402, 596, 905, 1069, 1283, 1739
ArsI	GACNNNNNNTTYG	2 cut(s)	164, 196
AsiGI	ACCGGT	1 cut(s)	314
Asp700I	GAANNNNTTC	1 cut(s)	1404
AspLEI	GCGC	4 cut(s)	55, 60, 140, 1625
AspS9I	GGNCC	2 cut(s)	570, 1022
AsuC2I	CCSGG	1 cut(s)	10
AsuHPI	GGTGA	4 cut(s)	93, 278, 1388, 1495
AsuII	TTCGAA	1 cut(s)	1338
AvaI	CYCGRG	2 cut(s)	855, 1734
AvaII	GGWCC	1 cut(s)	1022
BaeGI	GKGCMC	1 cut(s)	1939
BalI	TGGCCA	1 cut(s)	756
BanII	GRGCYC	1 cut(s)	1209
BauI	CACGAG	1 cut(s)	819
BbsI	GAAGAC	3 cut(s)	719, 1163, 1512
BbvI	GCAGC	7 cut(s)	319, 414, 583, 892, 1081, 1270, 1751
BccI	CCATC	5 cut(s)	424, 560, 854, 892, 1488
BceAI	ACGGC	2 cut(s)	42, 380
BciT130I	CCWGG	2 cut(s)	732, 1432
BcnI	CCSGG	1 cut(s)	10
BcoDI	GTCTC	1 cut(s)	856
BfaI	CTAG	1 cut(s)	914
BfmI	CTRYAG	2 cut(s)	1252, 1361
BfoI	RGCGCY	1 cut(s)	1626
BfuAI	ACCTGC	2 cut(s)	1357, 1364
BglI	GCCNNNNNGGC	1 cut(s)	146
BlpI	GCTNAGC	1 cut(s)	630
BmcAI	AGTACT	1 cut(s)	377
Bme1390I	CCNGG	3 cut(s)	10, 732, 1432
Bme18I	GGWCC	1 cut(s)	1022
BmeRI	GACNNNNNGTC	1 cut(s)	43
BmeT110I	CYCGRG	2 cut(s)	855, 1734
BmgT120I	GGNCC	2 cut(s)	570, 1022
BmiI	GGNNCC	3 cut(s)	14, 571, 1798
BmrFI	CCNGG	3 cut(s)	10, 732, 1432
BmsI	GCATC	5 cut(s)	69, 1528, 1625, 1714, 1948
BpiI	GAAGAC	3 cut(s)	719, 1163, 1512
BplI	GAGNNNNNCTC	4 cut(s)	23, 55, 802, 834
BpmI	CTGGAG	1 cut(s)	152
Bpu10I	CCTNAGC	1 cut(s)	1836
Bpu1102I	GCTNAGC	1 cut(s)	630
Bpu14I	TTCGAA	1 cut(s)	1338
BpuEI	CTTGAG	1 cut(s)	1193
BpuMI	CCSGG	1 cut(s)	10
BsaHI	GRCGYC	2 cut(s)	86, 1223
BsaJI	CCNNGG	4 cut(s)	141, 396, 1273, 1770
BsaWI	WCCGGW	5 cut(s)	262, 314, 348, 1480, 1720
BsaXI	ACNNNNNCTCC	2 cut(s)	909, 939
Bsc4I	CCNNNNNNNGG	5 cut(s)	54, 88, 220, 566, 579
Bse118I	RCCGGY	2 cut(s)	88, 314
Bse1I	ACTGG	1 cut(s)	1531
Bse3DI	GCAATG	2 cut(s)	598, 1953
BseAI	TCCGGA	1 cut(s)	1720
BseBI	CCWGG	2 cut(s)	732, 1432
BseDI	CCNNGG	4 cut(s)	141, 396, 1273, 1770
BseGI	GGATG	4 cut(s)	60, 865, 1543, 1729
BseLI	CCNNNNNNNGG	5 cut(s)	54, 88, 220, 566, 579
BseMI	GCAATG	2 cut(s)	598, 1953
BseMII	CTCAG	4 cut(s)	56, 1484, 1856, 1982
BseNI	ACTGG	1 cut(s)	1531
BseRI	GAGGAG	1 cut(s)	675
BseSI	GKGCMC	1 cut(s)	1939
BseX3I	CGGCCG	1 cut(s)	90
BseXI	GCAGC	7 cut(s)	319, 414, 583, 892, 1081, 1270, 1751
BseYI	CCCAGC	1 cut(s)	1065
BsgI	GTGCAG	3 cut(s)	458, 825, 1730
Bsh1236I	CGCG	6 cut(s)	53, 55, 95, 127, 291, 1933
Bsh1285I	CGRYCG	1 cut(s)	93
BshFI	GGCC	8 cut(s)	92, 247, 332, 371, 572, 756, 942, 1272
BshTI	ACCGGT	1 cut(s)	314
BsiEI	CGRYCG	1 cut(s)	93
BsiHKCI	CYCGRG	2 cut(s)	855, 1734
BsiSI	CCGG	9 cut(s)	10, 89, 263, 315, 333, 349, 368, 1481, 1721
BslFI	GGGAC	4 cut(s)	58, 1358, 1429, 1651
BslI	CCNNNNNNNGG	5 cut(s)	54, 88, 220, 566, 579
BsmAI	GTCTC	1 cut(s)	856
BsmFI	GGGAC	4 cut(s)	58, 1358, 1429, 1651
BsmI	GAATGC	1 cut(s)	1106
BsnI	GGCC	8 cut(s)	92, 247, 332, 371, 572, 756, 942, 1272
BsoBI	CYCGRG	2 cut(s)	855, 1734
Bsp119I	TTCGAA	1 cut(s)	1338
Bsp1286I	GDGCHC	2 cut(s)	1209, 1939
Bsp13I	TCCGGA	1 cut(s)	1720
Bsp1720I	GCTNAGC	1 cut(s)	630
Bsp19I	CCATGG	1 cut(s)	1273
BspANI	GGCC	8 cut(s)	92, 247, 332, 371, 572, 756, 942, 1272
BspCNI	CTCAG	4 cut(s)	55, 1483, 1857, 1981
BspEI	TCCGGA	1 cut(s)	1720
BspFNI	CGCG	6 cut(s)	53, 55, 95, 127, 291, 1933
BspHI	TCATGA	1 cut(s)	1162
BspLI	GGNNCC	3 cut(s)	14, 571, 1798
BspMI	ACCTGC	2 cut(s)	1357, 1364
BspPI	GGATC	7 cut(s)	14, 359, 431, 471, 521, 1514, 1782
BspT104I	TTCGAA	1 cut(s)	1338
BsrDI	GCAATG	2 cut(s)	598, 1953
BsrFI	RCCGGY	2 cut(s)	88, 314
BsrI	ACTGG	1 cut(s)	1531
BssAI	RCCGGY	2 cut(s)	88, 314
BssECI	CCNNGG	4 cut(s)	141, 396, 1273, 1770
BssNI	GRCGYC	2 cut(s)	86, 1223
BssSI	CACGAG	1 cut(s)	819
BssT1I	CCWWGG	3 cut(s)	141, 1273, 1770
Bst2BI	CACGAG	1 cut(s)	819
Bst2UI	CCWGG	2 cut(s)	732, 1432
Bst4CI	ACNGT	5 cut(s)	345, 622, 1354, 1426, 1718
Bst6I	CTCTTC	2 cut(s)	167, 732
BstACI	GRCGYC	2 cut(s)	86, 1223
BstBI	TTCGAA	1 cut(s)	1338
BstC8I	GCNNGC	6 cut(s)	90, 293, 979, 1092, 1595, 1935
BstDEI	CTNAG	7 cut(s)	42, 630, 1442, 1470, 1836, 1865, 1968
BstDSI	CCRYGG	2 cut(s)	396, 1273
BstF5I	GGATG	4 cut(s)	60, 865, 1543, 1729
BstFNI	CGCG	6 cut(s)	53, 55, 95, 127, 291, 1933
BstH2I	RGCGCY	1 cut(s)	1626
BstHHI	GCGC	4 cut(s)	55, 60, 140, 1625
BstMAI	GTCTC	1 cut(s)	856
BstMCI	CGRYCG	1 cut(s)	93
BstMWI	GCNNNNNNNGC	4 cut(s)	146, 640, 1363, 1943
BstNI	CCWGG	2 cut(s)	732, 1432
BstNSI	RCATGY	2 cut(s)	415, 1985
BstSCI	CCNGG	3 cut(s)	8, 730, 1430
BstSFI	CTRYAG	2 cut(s)	1252, 1361
BstSLI	GKGCMC	1 cut(s)	1939
BstUI	CGCG	6 cut(s)	53, 55, 95, 127, 291, 1933
BstV1I	GCAGC	7 cut(s)	319, 414, 583, 892, 1081, 1270, 1751
BstV2I	GAAGAC	3 cut(s)	719, 1163, 1512
BstX2I	RGATCY	4 cut(s)	19, 364, 476, 1519
BstXI	CCANNNNNNTGG	1 cut(s)	764
BstYI	RGATCY	4 cut(s)	19, 364, 476, 1519
BstZI	CGGCCG	1 cut(s)	90
BsuRI	GGCC	8 cut(s)	92, 247, 332, 371, 572, 756, 942, 1272
BtgI	CCRYGG	2 cut(s)	396, 1273
BtsCI	GGATG	4 cut(s)	60, 865, 1543, 1729
BtsI	GCAGTG	4 cut(s)	813, 967, 1121, 1854
BtsIMutI	CAGTG	5 cut(s)	618, 813, 967, 1121, 1854
BveI	ACCTGC	2 cut(s)	1357, 1364
Cac8I	GCNNGC	6 cut(s)	90, 293, 979, 1092, 1595, 1935
CciI	TCATGA	1 cut(s)	1162
CfoI	GCGC	4 cut(s)	55, 60, 140, 1625
Cfr10I	RCCGGY	2 cut(s)	88, 314
Cfr13I	GGNCC	2 cut(s)	570, 1022
CseI	GACGC	4 cut(s)	94, 394, 998, 1913
Csp6I	GTAC	6 cut(s)	352, 376, 442, 695, 1279, 1972
CspAI	ACCGGT	1 cut(s)	314
CspCI	CAANNNNNGTGG	2 cut(s)	607, 642
CviAII	CATG	9 cut(s)	190, 412, 605, 650, 1163, 1274, 1319, 1453, 1982
CviQI	GTAC	6 cut(s)	352, 376, 442, 695, 1279, 1972
DdeI	CTNAG	7 cut(s)	42, 630, 1442, 1470, 1836, 1865, 1968
DriI	GACNNNNNGTC	1 cut(s)	43
EaeI	YGGCCR	3 cut(s)	90, 369, 754
EagI	CGGCCG	1 cut(s)	90
Eam1104I	CTCTTC	2 cut(s)	167, 732
Eam1105I	GACNNNNNGTC	1 cut(s)	43
EarI	CTCTTC	2 cut(s)	167, 732
EciI	GGCGGA	2 cut(s)	37, 44
EclXI	CGGCCG	1 cut(s)	90
Eco130I	CCWWGG	3 cut(s)	141, 1273, 1770
Eco147I	AGGCCT	1 cut(s)	247
Eco24I	GRGCYC	1 cut(s)	1209
Eco47I	GGWCC	1 cut(s)	1022
Eco52I	CGGCCG	1 cut(s)	90
Eco57I	CTGAAG	3 cut(s)	239, 939, 1059
Eco88I	CYCGRG	2 cut(s)	855, 1734
EcoRII	CCWGG	2 cut(s)	730, 1430
EcoT14I	CCWWGG	3 cut(s)	141, 1273, 1770
EcoT38I	GRGCYC	1 cut(s)	1209
ErhI	CCWWGG	3 cut(s)	141, 1273, 1770
FaeI	CATG	9 cut(s)	193, 415, 608, 653, 1166, 1277, 1322, 1456, 1985
FaqI	GGGAC	4 cut(s)	58, 1358, 1429, 1651
FatI	CATG	9 cut(s)	189, 411, 604, 649, 1162, 1273, 1318, 1452, 1981
FauI	CCCGC	1 cut(s)	1406
FblI	GTMKAC	2 cut(s)	408, 505
FokI	GGATG	4 cut(s)	47, 872, 1550, 1736
FriOI	GRGCYC	1 cut(s)	1209
FspBI	CTAG	1 cut(s)	914
GlaI	GCGC	4 cut(s)	54, 59, 139, 1624
GsaI	CCCAGC	1 cut(s)	1069
GsuI	CTGGAG	1 cut(s)	152
HaeII	RGCGCY	1 cut(s)	1626
HaeIII	GGCC	8 cut(s)	92, 247, 332, 371, 572, 756, 942, 1272
HapII	CCGG	9 cut(s)	10, 89, 263, 315, 333, 349, 368, 1481, 1721
HgaI	GACGC	4 cut(s)	94, 394, 998, 1913
HhaI	GCGC	4 cut(s)	55, 60, 140, 1625
Hin1I	GRCGYC	2 cut(s)	86, 1223
Hin1II	CATG	9 cut(s)	193, 415, 608, 653, 1166, 1277, 1322, 1456, 1985
Hin6I	GCGC	4 cut(s)	53, 58, 138, 1623
HinP1I	GCGC	4 cut(s)	53, 58, 138, 1623
HincII	GTYRAC	2 cut(s)	409, 1291
HindII	GTYRAC	2 cut(s)	409, 1291
HindIII	AAGCTT	1 cut(s)	1260
HpaII	CCGG	9 cut(s)	10, 89, 263, 315, 333, 349, 368, 1481, 1721
HphI	GGTGA	4 cut(s)	93, 278, 1388, 1495
Hpy166II	GTNNAC	7 cut(s)	166, 409, 506, 682, 781, 1291, 1974
Hpy8I	GTNNAC	7 cut(s)	166, 409, 506, 682, 781, 1291, 1974
Hpy99I	CGWCG	3 cut(s)	359, 362, 410
HpyAV	CCTTC	5 cut(s)	263, 271, 697, 964, 1334
HpyCH4III	ACNGT	5 cut(s)	345, 622, 1354, 1426, 1718
HpyCH4IV	ACGT	2 cut(s)	354, 1223
HpyF10VI	GCNNNNNNNGC	4 cut(s)	146, 640, 1363, 1943
HpyF3I	CTNAG	7 cut(s)	42, 630, 1442, 1470, 1836, 1865, 1968
HpySE526I	ACGT	2 cut(s)	354, 1223
Hsp92I	GRCGYC	2 cut(s)	86, 1223
Hsp92II	CATG	9 cut(s)	193, 415, 608, 653, 1166, 1277, 1322, 1456, 1985
HspAI	GCGC	4 cut(s)	53, 58, 138, 1623
Kpn2I	TCCGGA	1 cut(s)	1720
KroI	GCCGGC	1 cut(s)	88
KroNI	GCCGGC	1 cut(s)	90
LmnI	GCTCC	1 cut(s)	788
Lsp1109I	GCAGC	7 cut(s)	319, 414, 583, 892, 1081, 1270, 1751
LweI	GCATC	5 cut(s)	69, 1528, 1625, 1714, 1948
MaeI	CTAG	1 cut(s)	914
MaeII	ACGT	2 cut(s)	354, 1223
MaeIII	GTNAC	4 cut(s)	1219, 1426, 1483, 1927
MboII	GAAGA	9 cut(s)	184, 374, 719, 724, 821, 945, 1165, 1168, 1517
MfeI	CAATTG	3 cut(s)	984, 1172, 1941
MflI	RGATCY	4 cut(s)	19, 364, 476, 1519
MhlI	GDGCHC	2 cut(s)	1209, 1939
MlsI	TGGCCA	1 cut(s)	756
MluCI	AATT	4 cut(s)	549, 984, 1172, 1941
MluI	ACGCGT	1 cut(s)	1931
MluNI	TGGCCA	1 cut(s)	756
MlyI	GAGTC	6 cut(s)	32, 184, 253, 709, 1153, 1673
MmeI	TCCRAC	4 cut(s)	47, 88, 433, 1515
Mox20I	TGGCCA	1 cut(s)	756
MroI	TCCGGA	1 cut(s)	1720
MroNI	GCCGGC	1 cut(s)	88
MroXI	GAANNNNTTC	1 cut(s)	1404
MscI	TGGCCA	1 cut(s)	756
MseI	TTAA	6 cut(s)	576, 794, 834, 1079, 1640, 1993
Msp20I	TGGCCA	1 cut(s)	756
MspA1I	CMGCKG	2 cut(s)	70, 467
MspI	CCGG	9 cut(s)	10, 89, 263, 315, 333, 349, 368, 1481, 1721
MspR9I	CCNGG	3 cut(s)	10, 732, 1432
MteI	GCGCNGCGC	1 cut(s)	56
MunI	CAATTG	3 cut(s)	984, 1172, 1941
Mva1269I	GAATGC	1 cut(s)	1106
MvaI	CCWGG	2 cut(s)	732, 1432
MvnI	CGCG	6 cut(s)	53, 55, 95, 127, 291, 1933
MwoI	GCNNNNNNNGC	4 cut(s)	146, 640, 1363, 1943
NaeI	GCCGGC	1 cut(s)	90
NciI	CCSGG	1 cut(s)	10
NcoI	CCATGG	1 cut(s)	1273
NgoMIV	GCCGGC	1 cut(s)	88
NlaIII	CATG	9 cut(s)	193, 415, 608, 653, 1166, 1277, 1322, 1456, 1985
NlaIV	GGNNCC	3 cut(s)	14, 571, 1798
NmuCI	GTSAC	2 cut(s)	1219, 1483
NspI	RCATGY	2 cut(s)	415, 1985
NspV	TTCGAA	1 cut(s)	1338
PaeR7I	CTCGAG	1 cut(s)	1734
PagI	TCATGA	1 cut(s)	1162
PaqCI	CACCTGC	1 cut(s)	1364
PceI	AGGCCT	1 cut(s)	247
PciI	ACATGT	1 cut(s)	411
PcsI	WCGNNNNNNNCGW	3 cut(s)	92, 288, 744
PctI	GAATGC	1 cut(s)	1106
PdiI	GCCGGC	1 cut(s)	90
PdmI	GAANNNNTTC	1 cut(s)	1404
PfeI	GAWTC	6 cut(s)	336, 735, 798, 813, 1448, 1676
PflMI	CCANNNNNTGG	2 cut(s)	566, 579
PfoI	TCCNGGA	1 cut(s)	730
PinAI	ACCGGT	1 cut(s)	314
PleI	GAGTC	6 cut(s)	32, 183, 253, 709, 1153, 1672
PpsI	GAGTC	6 cut(s)	32, 183, 253, 709, 1153, 1672
PscI	ACATGT	1 cut(s)	411
Psp6I	CCWGG	2 cut(s)	730, 1430
PspFI	CCCAGC	1 cut(s)	1065
PspGI	CCWGG	2 cut(s)	730, 1430
PspN4I	GGNNCC	3 cut(s)	14, 571, 1798
PspPI	GGNCC	2 cut(s)	570, 1022
PsuI	RGATCY	4 cut(s)	19, 364, 476, 1519
PvuII	CAGCTG	2 cut(s)	70, 467
RsaI	GTAC	6 cut(s)	353, 377, 443, 696, 1280, 1973
RsaNI	GTAC	6 cut(s)	352, 376, 442, 695, 1279, 1972
SalI	GTCGAC	1 cut(s)	407
SaqAI	TTAA	6 cut(s)	576, 794, 834, 1079, 1640, 1993
Sau96I	GGNCC	2 cut(s)	570, 1022
ScaI	AGTACT	1 cut(s)	377
SchI	GAGTC	6 cut(s)	32, 184, 253, 709, 1153, 1673
ScrFI	CCNGG	3 cut(s)	10, 732, 1432
SduI	GDGCHC	2 cut(s)	1209, 1939
SfaNI	GCATC	5 cut(s)	69, 1528, 1625, 1714, 1948
SfcI	CTRYAG	2 cut(s)	1252, 1361
Sfr274I	CTCGAG	1 cut(s)	1734
SfuI	TTCGAA	1 cut(s)	1338
SinI	GGWCC	1 cut(s)	1022
SlaI	CTCGAG	1 cut(s)	1734
SmlI	CTYRAG	2 cut(s)	1208, 1734
SmoI	CTYRAG	2 cut(s)	1208, 1734
Sse9I	AATT	4 cut(s)	549, 984, 1172, 1941
SseBI	AGGCCT	1 cut(s)	247
SspI	AATATT	1 cut(s)	1142
SspMI	CTAG	1 cut(s)	914
StuI	AGGCCT	1 cut(s)	247
StyD4I	CCNGG	3 cut(s)	8, 730, 1430
StyI	CCWWGG	3 cut(s)	141, 1273, 1770
TaaI	ACNGT	5 cut(s)	345, 622, 1354, 1426, 1718
TaiI	ACGT	2 cut(s)	357, 1226
TaqI	TCGA	9 cut(s)	182, 360, 408, 738, 1338, 1492, 1561, 1735, 1777
TasI	AATT	4 cut(s)	549, 984, 1172, 1941
TatI	WGTACW	3 cut(s)	375, 441, 1971
TauI	GCSGC	6 cut(s)	53, 58, 95, 130, 149, 152
TfiI	GAWTC	6 cut(s)	336, 735, 798, 813, 1448, 1676
Tru1I	TTAA	6 cut(s)	576, 794, 834, 1079, 1640, 1993
Tru9I	TTAA	6 cut(s)	576, 794, 834, 1079, 1640, 1993
TscAI	CASTG	5 cut(s)	625, 813, 967, 1128, 1861
TseFI	GTSAC	2 cut(s)	1219, 1483
TseI	GCWGC	7 cut(s)	307, 402, 596, 905, 1069, 1283, 1739
Tsp45I	GTSAC	2 cut(s)	1219, 1483
TspDTI	ATGAA	6 cut(s)	593, 679, 725, 1166, 1182, 1469
TspGWI	ACGGA	1 cut(s)	791
TspRI	CASTG	5 cut(s)	625, 813, 967, 1128, 1861
Van91I	CCANNNNNTGG	2 cut(s)	566, 579
VpaK11BI	GGWCC	1 cut(s)	1022
XceI	RCATGY	2 cut(s)	415, 1985
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1126
XhoI	CTCGAG	1 cut(s)	1734
XmiI	GTMKAC	2 cut(s)	408, 505
XmnI	GAANNNNTTC	1 cut(s)	1404
XspI	CTAG	1 cut(s)	914
ZraI	GACGTC	1 cut(s)	1224
ZrmI	AGTACT	1 cut(s)	377

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.