pycom01g06140
ERF Family

Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB NOP family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
Physical Location & Seq
Reverse (-)
6245471 .. 6259526
14056 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g06140.9

Sequence Viewer

Length: 1509 bp
ATGGGAGGCGGCGGCGGCAGAGGCAGAGGCGGTTCTCGCACTCAGCGACGCCACTTCCGTCAGAACAGAGAGAACGTTTGGAAGCGTCCCAAGTCTGATCCTTCCTCTGAAAACACCAATGAAAACAATGGCGAGAATCGTGGTTGGGAACCCTTTGCCACTCAAAACCCTGCATTCGATGAATACTATAAGGAGCAAGGGATAGTGAGCCCAGAAGAGTGGGATGCGTTCATTGAAGTTCTTCGAAAGCCGTTGCCTGCTGCTTTTAGAATCAATTCAAGTAGCCAATTTTGTTCGGATATCCGAAGGCAGTTAGAGGATGACTTTATGATCTCTCTACAATCTGAGGTAAGTGAAGGGGGTGAACCACAGCCTATTAGGCCGTTGCCTTGGTATCCTGAGAATCTAGCTTGGCATTCGAATTTCTCTCGCATGCAGCTGAGGAAGAACCAAACACTTGAGAGGTTTCATGAGTTCTTAAAGCTTGAAAATGAGATTGGAAACATCACAAGACAGGAGGCTGTCAGCATGGTGCCTCCACTATTCCTTGATGTACGTCCAGATCATTTTGTACTTGATATGTGCGCTGCACCAGGTTCGAAAACATTCCAATTGCTTGAGATTATACACCGATCGATCAAACCAGGATCCCTACCTGATGGATTGGTTGTAGCAAATGATCGATCTGATGTCCAAAGATGTAATCTACTCATCCATCAAACAAAACGAATGTGCACAGCCAACTTGATAGTCACAAATCATGAGGCTCAGCACTTTCCTGGCTGCCGGGCAAAGTCTACTGCTTCCGAAATAGGAGCTGAAATGGAGCCACCCATCAGCCAACTTGTGTTTGATCGTGTTTTATGTGATGTTCCTTGCAGTGGAGATGGTACCCTTCGCAAGGCTCCTGATATATGGAGGAAATGGCATGCTGGATTGGGCAATGGGGTTCATCCTCTACAAATTCAAATAGCTATGCGAGGTTTATCATTGCTTAAAGTTGGTGGAAGAATGGTGTACTCTACCTGCTCTATGAATCCAGTTGAGAATGAAGCTGTGGTTGCTGAGTTTTTGCGGGGAGGTGGTGGGTTTGTTGAGCTTATTGATGTCTCTAGTGAGCTGCCTCAACTTGTTCGAAGGCCAGGTCTTAAAAAATGGAAGATACGTGACAAGGGTAGGTGGTTAGCTTCCCACAAAATGGTCAGCAAATATCGCAAAAGTGTCATTGTTCCCAGCATGTTTCCTTCTGGAAGAAGCTTTACAGAACAAATGGACGCTAATGGTAGTATGGAAGTGGGAGAAAAGCATGAGAATGGTGGAAATGTTGAAGATGCGTTGCAGTCAACTGATGATCCTGCAACTGTAGCCAATGAACAAGAGGAGGAAGTTTCTGATTTTCCACTAGAACGCTGCATGAGGATAGTCCCGGATCGATCAAAACGGAGGAGCTTTCTTCATTGCTGTCTTCCACAAACATTCTGCTTTGCCAGCCACTCAGGGGAAACCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

503

Amino Acids

56.63

Weight (kDa)

6.72

Isoelectric Point (pI)

54.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1034
Acc65I GGTACC 1 cut(s) 890
AccB1I GGYRCC 2 cut(s) 532, 890
AccB7I CCANNNNNTGG 1 cut(s) 1198
AccI GTMKAC 1 cut(s) 797
AciI CCGC 5 cut(s) 9, 12, 15, 30, 1075
AclI AACGTT 1 cut(s) 75
AclWI GGATC 5 cut(s) 92, 642, 655, 1346, 1437
AcsI RAATTY 2 cut(s) 421, 963
AcyI GRCGYC 1 cut(s) 49
AfaI GTAC 4 cut(s) 555, 573, 892, 1019
AfiI CCNNNNNNNGG 4 cut(s) 881, 901, 1198, 1498
AgsI TTSAA 5 cut(s) 236, 279, 488, 968, 1328
AjnI CCWGG 4 cut(s) 592, 643, 778, 1141
AjuI GAANNNNNNNTTGG 2 cut(s) 480, 512
Alw21I GWGCWC 1 cut(s) 737
Alw26I GTCTC 1 cut(s) 1114
Alw44I GTGCAC 1 cut(s) 733
AlwI GGATC 5 cut(s) 92, 642, 655, 1346, 1437
AoxI GGCC 2 cut(s) 380, 1139
ApaLI GTGCAC 1 cut(s) 733
ApeKI GCWGC 6 cut(s) 260, 436, 587, 783, 1120, 1410
ApoI RAATTY 2 cut(s) 421, 963
ArsI GACNNNNNNTTYG 2 cut(s) 1129, 1161
Asp700I GAANNNNTTC 3 cut(s) 240, 274, 605
Asp718I GGTACC 1 cut(s) 890
AspLEI GCGC 1 cut(s) 587
AsuC2I CCSGG 2 cut(s) 788, 1427
AsuHPI GGTGA 1 cut(s) 374
AsuII TTCGAA 4 cut(s) 244, 419, 599, 1135
BaeGI GKGCMC 1 cut(s) 737
BamHI GGATCC 1 cut(s) 647
BanI GGYRCC 2 cut(s) 532, 890
BanII GRGCYC 1 cut(s) 212
BarI GAAGNNNNNNTAC 2 cut(s) 1243, 1275
BbsI GAAGAC 1 cut(s) 1457
Bbv12I GWGCWC 1 cut(s) 737
BbvCI CCTCAGC 1 cut(s) 440
BbvI GCAGC 6 cut(s) 247, 448, 574, 770, 1107, 1397
BccI CCATC 4 cut(s) 653, 723, 842, 881
BceAI ACGGC 2 cut(s) 235, 367
BcgI CGANNNNNNTGC 2 cut(s) 579, 613
BciT130I CCWGG 4 cut(s) 594, 645, 780, 1143
BciVI GTATCC 1 cut(s) 405
BcnI CCSGG 2 cut(s) 788, 1427
BcoDI GTCTC 1 cut(s) 1114
BfaI CTAG 4 cut(s) 407, 1113, 1403, 1507
BfmI CTRYAG 1 cut(s) 1362
BfuAI ACCTGC 1 cut(s) 1034
BfuI GTATCC 1 cut(s) 405
BglI GCCNNNNNGGC 1 cut(s) 379
BisI GCNGC 9 cut(s) 10, 13, 16, 261, 437, 588, 784, 1121, 1411
BlpI GCTNAGC 1 cut(s) 768
BlsI GCNGC 9 cut(s) 11, 14, 17, 262, 438, 589, 785, 1122, 1412
Bme1390I CCNGG 6 cut(s) 594, 645, 780, 788, 1143, 1427
BmiI GGNNCC 6 cut(s) 150, 534, 649, 828, 892, 906
BmrFI CCNGG 6 cut(s) 594, 645, 780, 788, 1143, 1427
BmsI GCATC 2 cut(s) 214, 1321
BpiI GAAGAC 1 cut(s) 1457
Bpu10I CCTNAGC 1 cut(s) 440
Bpu1102I GCTNAGC 1 cut(s) 768
Bpu14I TTCGAA 4 cut(s) 244, 419, 599, 1135
BpuEI CTTGAG 2 cut(s) 479, 638
BpuMI CCSGG 2 cut(s) 788, 1427
Bsa29I ATCGAT 3 cut(s) 635, 682, 1432
BsaAI YACGTR 1 cut(s) 1166
BsaHI GRCGYC 1 cut(s) 49
BsaJI CCNNGG 1 cut(s) 389
Bsc4I CCNNNNNNNGG 4 cut(s) 881, 901, 1198, 1498
Bse1I ACTGG 1 cut(s) 1040
Bse3DI GCAATG 3 cut(s) 949, 989, 1456
BseBI CCWGG 4 cut(s) 594, 645, 780, 1143
BseCI ATCGAT 3 cut(s) 635, 682, 1432
BseDI CCNNGG 1 cut(s) 389
BseGI GGATG 4 cut(s) 229, 325, 711, 952
BseLI CCNNNNNNNGG 4 cut(s) 881, 901, 1198, 1498
BseMI GCAATG 3 cut(s) 949, 989, 1456
BseMII CTCAG 7 cut(s) 56, 336, 390, 431, 782, 1056, 1509
BseNI ACTGG 1 cut(s) 1040
BseRI GAGGAG 2 cut(s) 1394, 1459
BseSI GKGCMC 1 cut(s) 737
BseXI GCAGC 6 cut(s) 247, 448, 574, 770, 1107, 1397
BseYI CCCAGC 1 cut(s) 1232
BsgI GTGCAG 1 cut(s) 573
Bsh1285I CGRYCG 1 cut(s) 635
BshFI GGCC 2 cut(s) 382, 1141
BshNI GGYRCC 2 cut(s) 532, 890
BshVI ATCGAT 3 cut(s) 635, 682, 1432
BsiEI CGRYCG 1 cut(s) 635
BsiHKAI GWGCWC 1 cut(s) 737
BsiSI CCGG 2 cut(s) 787, 1427
BslFI GGGAC 2 cut(s) 72, 1409
BslI CCNNNNNNNGG 4 cut(s) 881, 901, 1198, 1498
BsmAI GTCTC 1 cut(s) 1114
BsmFI GGGAC 2 cut(s) 72, 1409
BsmI GAATGC 2 cut(s) 173, 415
BsnI GGCC 2 cut(s) 382, 1141
Bsp119I TTCGAA 4 cut(s) 244, 419, 599, 1135
Bsp1286I GDGCHC 2 cut(s) 212, 737
Bsp1720I GCTNAGC 1 cut(s) 768
BspACI CCGC 5 cut(s) 9, 12, 15, 30, 1075
BspANI GGCC 2 cut(s) 382, 1141
BspCNI CTCAG 7 cut(s) 55, 337, 391, 432, 781, 1057, 1508
BspDI ATCGAT 3 cut(s) 635, 682, 1432
BspHI TCATGA 2 cut(s) 469, 760
BspLI GGNNCC 6 cut(s) 150, 534, 649, 828, 892, 906
BspMI ACCTGC 1 cut(s) 1034
BspPI GGATC 5 cut(s) 92, 642, 655, 1346, 1437
BspT104I TTCGAA 4 cut(s) 244, 419, 599, 1135
BspT107I GGYRCC 2 cut(s) 532, 890
BsrDI GCAATG 3 cut(s) 949, 989, 1456
BsrI ACTGG 1 cut(s) 1040
BssECI CCNNGG 1 cut(s) 389
BssNI GRCGYC 1 cut(s) 49
BssT1I CCWWGG 1 cut(s) 389
Bst2UI CCWGG 4 cut(s) 594, 645, 780, 1143
Bst4CI ACNGT 1 cut(s) 1363
Bst6I CTCTTC 1 cut(s) 210
BstACI GRCGYC 1 cut(s) 49
BstBAI YACGTR 1 cut(s) 1166
BstBI TTCGAA 4 cut(s) 244, 419, 599, 1135
BstC8I GCNNGC 4 cut(s) 258, 434, 930, 1489
BstDEI CTNAG 7 cut(s) 42, 345, 399, 440, 768, 1065, 1495
BstENI CCTNNNNNAGG 1 cut(s) 899
BstF5I GGATG 4 cut(s) 229, 325, 711, 952
BstHHI GCGC 1 cut(s) 587
BstMAI GTCTC 1 cut(s) 1114
BstMCI CGRYCG 1 cut(s) 635
BstMWI GCNNNNNNNGC 8 cut(s) 15, 21, 36, 379, 1061, 1212, 1364, 1488
BstNI CCWGG 4 cut(s) 594, 645, 780, 1143
BstNSI RCATGY 3 cut(s) 436, 932, 1240
BstSCI CCNGG 6 cut(s) 592, 643, 778, 786, 1141, 1425
BstSFI CTRYAG 1 cut(s) 1362
BstSLI GKGCMC 1 cut(s) 737
BstV1I GCAGC 6 cut(s) 247, 448, 574, 770, 1107, 1397
BstV2I GAAGAC 1 cut(s) 1457
BstX2I RGATCY 1 cut(s) 647
BstXI CCANNNNNNTGG 1 cut(s) 219
BstYI RGATCY 1 cut(s) 647
Bsu15I ATCGAT 3 cut(s) 635, 682, 1432
BsuI GTATCC 1 cut(s) 405
BsuRI GGCC 2 cut(s) 382, 1141
BsuTUI ATCGAT 3 cut(s) 635, 682, 1432
BtsCI GGATG 4 cut(s) 229, 325, 711, 952
BtsI GCAGTG 1 cut(s) 886
BtsIMutI CAGTG 1 cut(s) 886
BveI ACCTGC 1 cut(s) 1034
Cac8I GCNNGC 4 cut(s) 258, 434, 930, 1489
CciI TCATGA 2 cut(s) 469, 760
CfoI GCGC 1 cut(s) 587
ClaI ATCGAT 3 cut(s) 635, 682, 1432
CseI GACGC 3 cut(s) 57, 74, 1283
CsiI ACCWGGT 1 cut(s) 592
Csp6I GTAC 4 cut(s) 554, 572, 891, 1018
CviAII CATG 8 cut(s) 433, 470, 529, 761, 929, 1237, 1307, 1414
CviQI GTAC 4 cut(s) 554, 572, 891, 1018
DdeI CTNAG 7 cut(s) 42, 345, 399, 440, 768, 1065, 1495
Eam1104I CTCTTC 1 cut(s) 210
EarI CTCTTC 1 cut(s) 210
Eco130I CCWWGG 1 cut(s) 389
Eco24I GRGCYC 1 cut(s) 212
Eco32I GATATC 1 cut(s) 301
EcoNI CCTNNNNNAGG 1 cut(s) 899
EcoRII CCWGG 4 cut(s) 592, 643, 778, 1141
EcoRV GATATC 1 cut(s) 301
EcoT14I CCWWGG 1 cut(s) 389
EcoT38I GRGCYC 1 cut(s) 212
ErhI CCWWGG 1 cut(s) 389
FaeI CATG 8 cut(s) 436, 473, 532, 764, 932, 1240, 1310, 1417
FaqI GGGAC 2 cut(s) 72, 1409
FatI CATG 8 cut(s) 432, 469, 528, 760, 928, 1236, 1306, 1413
FauI CCCGC 1 cut(s) 1068
FblI GTMKAC 1 cut(s) 797
Fnu4HI GCNGC 9 cut(s) 10, 13, 16, 261, 437, 588, 784, 1121, 1411
FokI GGATG 4 cut(s) 236, 332, 698, 939
FriOI GRGCYC 1 cut(s) 212
Fsp4HI GCNGC 9 cut(s) 10, 13, 16, 261, 437, 588, 784, 1121, 1411
FspBI CTAG 4 cut(s) 407, 1113, 1403, 1507
GlaI GCGC 1 cut(s) 586
GluI GCNGC 9 cut(s) 10, 13, 16, 261, 437, 588, 784, 1121, 1411
GsaI CCCAGC 1 cut(s) 1236
HaeIII GGCC 2 cut(s) 382, 1141
HapII CCGG 2 cut(s) 787, 1427
HgaI GACGC 3 cut(s) 57, 74, 1283
HhaI GCGC 1 cut(s) 587
Hin1I GRCGYC 1 cut(s) 49
Hin1II CATG 8 cut(s) 436, 473, 532, 764, 932, 1240, 1310, 1417
Hin6I GCGC 1 cut(s) 585
HinP1I GCGC 1 cut(s) 585
HincII GTYRAC 1 cut(s) 1344
HindII GTYRAC 1 cut(s) 1344
HindIII AAGCTT 2 cut(s) 482, 1255
HinfI GANTC 4 cut(s) 136, 270, 403, 1036
HpaII CCGG 2 cut(s) 787, 1427
HphI GGTGA 1 cut(s) 374
Hpy166II GTNNAC 5 cut(s) 365, 735, 798, 1018, 1344
Hpy188I TCNGA 9 cut(s) 63, 97, 109, 298, 305, 346, 688, 808, 1393
Hpy188III TCNNGA 6 cut(s) 398, 470, 560, 761, 908, 1248
Hpy8I GTNNAC 5 cut(s) 365, 735, 798, 1018, 1344
Hpy99I CGWCG 1 cut(s) 51
HpyAV CCTTC 6 cut(s) 111, 300, 350, 905, 1131, 1254
HpyCH4III ACNGT 1 cut(s) 1363
HpyCH4IV ACGT 3 cut(s) 75, 556, 1165
HpyCH4V TGCA 8 cut(s) 173, 436, 590, 735, 879, 1339, 1358, 1413
HpyF10VI GCNNNNNNNGC 8 cut(s) 15, 21, 36, 379, 1061, 1212, 1364, 1488
HpyF3I CTNAG 7 cut(s) 42, 345, 399, 440, 768, 1065, 1495
HpySE526I ACGT 3 cut(s) 75, 556, 1165
Hsp92I GRCGYC 1 cut(s) 49
Hsp92II CATG 8 cut(s) 436, 473, 532, 764, 932, 1240, 1310, 1417
HspAI GCGC 1 cut(s) 585
KpnI GGTACC 1 cut(s) 894
LmnI GCTCC 5 cut(s) 193, 815, 826, 910, 1446
Lsp1109I GCAGC 6 cut(s) 247, 448, 574, 770, 1107, 1397
LweI GCATC 2 cut(s) 214, 1321
MabI ACCWGGT 1 cut(s) 592
MaeI CTAG 4 cut(s) 407, 1113, 1403, 1507
MaeII ACGT 3 cut(s) 75, 556, 1165
MaeIII GTNAC 2 cut(s) 751, 1166
MboII GAAGA 9 cut(s) 227, 233, 457, 1020, 1171, 1263, 1340, 1445, 1457
MfeI CAATTG 1 cut(s) 611
MflI RGATCY 1 cut(s) 647
MhlI GDGCHC 2 cut(s) 212, 737
MluCI AATT 5 cut(s) 274, 287, 421, 611, 963
MroXI GAANNNNTTC 3 cut(s) 240, 274, 605
MseI TTAA 3 cut(s) 479, 996, 1149
MslI CAYNNNNRTG 1 cut(s) 1311
MspA1I CMGCKG 1 cut(s) 439
MspI CCGG 2 cut(s) 787, 1427
MspR9I CCNGG 6 cut(s) 594, 645, 780, 788, 1143, 1427
MunI CAATTG 1 cut(s) 611
Mva1269I GAATGC 2 cut(s) 173, 415
MvaI CCWGG 4 cut(s) 594, 645, 780, 1143
MwoI GCNNNNNNNGC 8 cut(s) 15, 21, 36, 379, 1061, 1212, 1364, 1488
NciI CCSGG 2 cut(s) 788, 1427
NlaIII CATG 8 cut(s) 436, 473, 532, 764, 932, 1240, 1310, 1417
NlaIV GGNNCC 6 cut(s) 150, 534, 649, 828, 892, 906
NmuCI GTSAC 2 cut(s) 751, 1166
NspI RCATGY 3 cut(s) 436, 932, 1240
NspV TTCGAA 4 cut(s) 244, 419, 599, 1135
PaeI GCATGC 2 cut(s) 436, 932
PagI TCATGA 2 cut(s) 469, 760
PcsI WCGNNNNNNNCGW 2 cut(s) 43, 55
PctI GAATGC 2 cut(s) 173, 415
PdmI GAANNNNTTC 3 cut(s) 240, 274, 605
PfeI GAWTC 4 cut(s) 136, 270, 403, 1036
PflMI CCANNNNNTGG 1 cut(s) 1198
PfoI TCCNGGA 1 cut(s) 1425
PkrI GCNGC 9 cut(s) 11, 14, 17, 262, 438, 589, 785, 1122, 1412
Ple19I CGATCG 1 cut(s) 635
Ppu21I YACGTR 1 cut(s) 1166
Psp1406I AACGTT 1 cut(s) 75
Psp6I CCWGG 4 cut(s) 592, 643, 778, 1141
PspFI CCCAGC 1 cut(s) 1232
PspGI CCWGG 4 cut(s) 592, 643, 778, 1141
PspN4I GGNNCC 6 cut(s) 150, 534, 649, 828, 892, 906
PsuI RGATCY 1 cut(s) 647
PvuI CGATCG 1 cut(s) 635
PvuII CAGCTG 1 cut(s) 439
RsaI GTAC 4 cut(s) 555, 573, 892, 1019
RsaNI GTAC 4 cut(s) 554, 572, 891, 1018
RseI CAYNNNNRTG 1 cut(s) 1311
SaqAI TTAA 3 cut(s) 479, 996, 1149
SatI GCNGC 9 cut(s) 10, 13, 16, 261, 437, 588, 784, 1121, 1411
ScrFI CCNGG 6 cut(s) 594, 645, 780, 788, 1143, 1427
SduI GDGCHC 2 cut(s) 212, 737
SexAI ACCWGGT 1 cut(s) 592
SfaNI GCATC 2 cut(s) 214, 1321
SfcI CTRYAG 1 cut(s) 1362
SfuI TTCGAA 4 cut(s) 244, 419, 599, 1135
SmiMI CAYNNNNRTG 1 cut(s) 1311
SmlI CTYRAG 2 cut(s) 458, 617
SmoI CTYRAG 2 cut(s) 458, 617
SphI GCATGC 2 cut(s) 436, 932
Sse9I AATT 5 cut(s) 274, 287, 421, 611, 963
SsiI CCGC 5 cut(s) 9, 12, 15, 30, 1075
SspMI CTAG 4 cut(s) 407, 1113, 1403, 1507
StyD4I CCNGG 6 cut(s) 592, 643, 778, 786, 1141, 1425
StyI CCWWGG 1 cut(s) 389
TaaI ACNGT 1 cut(s) 1363
TaiI ACGT 3 cut(s) 78, 559, 1168
TaqI TCGA 8 cut(s) 177, 244, 419, 599, 635, 682, 1135, 1432
TasI AATT 5 cut(s) 274, 287, 421, 611, 963
TatI WGTACW 2 cut(s) 571, 1017
TauI GCSGC 3 cut(s) 12, 15, 18
TfiI GAWTC 4 cut(s) 136, 270, 403, 1036
Tru1I TTAA 3 cut(s) 479, 996, 1149
Tru9I TTAA 3 cut(s) 479, 996, 1149
TscAI CASTG 1 cut(s) 886
TseFI GTSAC 2 cut(s) 751, 1166
TseI GCWGC 6 cut(s) 260, 436, 587, 783, 1120, 1410
Tsp45I GTSAC 2 cut(s) 751, 1166
TspDTI ATGAA 9 cut(s) 135, 195, 220, 458, 941, 1049, 1065, 1386, 1445
TspGWI ACGGA 2 cut(s) 47, 1456
TspRI CASTG 1 cut(s) 886
Van91I CCANNNNNTGG 1 cut(s) 1198
VneI GTGCAC 1 cut(s) 733
XagI CCTNNNNNAGG 1 cut(s) 899
XapI RAATTY 2 cut(s) 421, 963
XceI RCATGY 3 cut(s) 436, 932, 1240
XmiI GTMKAC 1 cut(s) 797
XmnI GAANNNNTTC 3 cut(s) 240, 274, 605
XspI CTAG 4 cut(s) 407, 1113, 1403, 1507
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.