Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0002664

Physical Location & Seq

Genomic Coordinates Reverse (-)

16800835 .. 16815418

Gene Structure 14584 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0181300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGGACACCGGAGCGGCGGGCGTGGGTCTCGCCGCCACCGCCGACCCGTCGTCTCAGGGATCGCCGCTCGACGCATTCCAGGCATTGAGCTTCGGCGTCTCGCGCCGATTTCAGCACTTGCTCGACAAAACGACGCCGCACCTCCTCTACCGCTGGCTCGCCACCCTCGCCGTCGCCTTGGTCTACGTCCTCCGAATCTACCGGGTCCAGGGATTCTACGTCGTGTCGTACGGCTTGGGGATCTACCTCCTCAACTTGCTCATCGGCTTTCTCTCTCCTCAGGTCGACCCGGAGATCCACGACCTTTCCGACGGCCCCAGCCTCCCCACCCGCGGATCCGACGAGTTCCGGCCCTTCGTTCGACGCCTCCCCGAGTTTAAATTCTGGTACTCAATTACAAAGGCGTTTTGCATTGCTTTCGTGATGACATTCTTCAGTGCATTTGATGTGCCTGTGTTCTGGCCAATTCTTCTCTTTTACTGGCTTGTGCTCTTCGTTCTCACAATGAGGAGGCAGATCGTGCACATGATCAAGTACAAATATGTTCCTTTCTCTATTGGCAAGCAGAGGTATGATGGAAAGAAAGCTTCTGCATTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006725 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009505 GO:0009698 GO:0009699 GO:0009791 GO:0009808 GO:0009809 GO:0009987 GO:0010228 GO:0019438 GO:0019748 GO:0022414 GO:0030312 GO:0032501 GO:0032502 GO:0044237 GO:0044249 GO:0044424 GO:0044444 GO:0044464 GO:0044550 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0071944 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

peroxidase

Protein Analysis

199

Amino Acids

22.69

Weight (kDa)

9.57

Isoelectric Point (pI)

42.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rer1	PF03248	33 - 191	3.8e-77	Rer1 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002664)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22420
fragaria_vesca	FvH4_1g20350 FvH4_1g20360 FvH4_1g20360
malus_domestica	MD01G1034400.v1.1 MD01G1034500.v1.1 MD01G1034900.v1.1 MD15G1321200.v1.1 MD15G1321300.v1.1 MD15G1321400.v1.1
prunus_persica	Prupe.6G191800_v2.0.a1 Prupe.6G191900_v2.0.a1 Prupe.6G192000_v2.0.a1
pyrus_communis	pycom01g06150 pycom01g06160 pycom01g06190 pycom15g28200 pycom15g28210
rosa_chinensis	RchiOBHm_Chr2g0112481 RchiOBHm_Chr2g0112491
rosa_laevigata	RLG00000017984 RLG00000017985
rosa_multiflora	Rmu_co8298115.1_g000001 Rmu_co8310909.1_g000001 Rmu_sc0013522.1_g000001 Rmu_sc0026466.1_g000001
rosa_roxburghii	Rroxscaffold_2G00131380 Rroxscaffold_2G00131390
rosa_rugosa	Rorug02G0181300 Rorug02G0181300
rosa_samantha	Rh2AG234300 Rh2AG234400 Rh2BG247900 Rh2BG248000 Rh2CG238900 Rh2CG239000 Rh2DG241900 Rh2DG242000
rosa_wichuraiana	Rw2G018150 Rw2G018160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	14, 67
AccI	GTMKAC	2 cut(s)	183, 285
AccII	CGCG	2 cut(s)	103, 333
AciI	CCGC	9 cut(s)	14, 17, 33, 39, 65, 137, 151, 331, 333
AclWI	GGATC	5 cut(s)	67, 248, 289, 330, 343
AcoI	YGGCCR	1 cut(s)	461
AcsI	RAATTY	1 cut(s)	380
AcuI	CTGAAG	1 cut(s)	418
AcyI	GRCGYC	3 cut(s)	96, 134, 364
AfaI	GTAC	3 cut(s)	230, 389, 536
AfiI	CCNNNNNNNGG	2 cut(s)	208, 332
AhdI	GACNNNNNGTC	1 cut(s)	49
AjnI	CCWGG	2 cut(s)	78, 207
AluBI	AGCT	2 cut(s)	90, 587
AluI	AGCT	2 cut(s)	90, 587
Alw21I	GWGCWC	2 cut(s)	492, 525
Alw26I	GTCTC	3 cut(s)	32, 57, 103
Alw44I	GTGCAC	1 cut(s)	521
AlwI	GGATC	5 cut(s)	67, 248, 289, 330, 343
Ama87I	CYCGRG	1 cut(s)	371
AoxI	GGCC	3 cut(s)	313, 350, 461
ApaLI	GTGCAC	1 cut(s)	521
ApoI	RAATTY	1 cut(s)	380
AspLEI	GCGC	1 cut(s)	105
AspS9I	GGNCC	3 cut(s)	205, 314, 351
AsuC2I	CCSGG	2 cut(s)	203, 290
AvaI	CYCGRG	1 cut(s)	371
AvaII	GGWCC	1 cut(s)	205
AxyI	CCTNAGG	1 cut(s)	279
BaeGI	GKGCMC	1 cut(s)	525
BalI	TGGCCA	1 cut(s)	463
BamHI	GGATCC	1 cut(s)	335
Bbv12I	GWGCWC	2 cut(s)	492, 525
BccI	CCATC	1 cut(s)	569
BceAI	ACGGC	3 cut(s)	155, 247, 328
BcgI	CGANNNNNNTGC	2 cut(s)	400, 434
BciT130I	CCWGG	2 cut(s)	80, 209
BclI	TGATCA	1 cut(s)	528
BcnI	CCSGG	2 cut(s)	203, 290
BcoDI	GTCTC	3 cut(s)	32, 57, 103
BisI	GCNGC	4 cut(s)	15, 33, 65, 137
BlsI	GCNGC	4 cut(s)	16, 34, 66, 138
Bme1390I	CCNGG	4 cut(s)	80, 203, 209, 290
Bme18I	GGWCC	1 cut(s)	205
BmeRI	GACNNNNNGTC	1 cut(s)	49
BmeT110I	CYCGRG	1 cut(s)	371
BmgT120I	GGNCC	3 cut(s)	205, 314, 351
BmiI	GGNNCC	3 cut(s)	206, 316, 337
BmrFI	CCNGG	4 cut(s)	80, 203, 209, 290
BpuMI	CCSGG	2 cut(s)	203, 290
BsaHI	GRCGYC	3 cut(s)	96, 134, 364
BsaI	GGTCTC	1 cut(s)	32
BsaJI	CCNNGG	3 cut(s)	177, 208, 331
BsaWI	WCCGGW	1 cut(s)	8
Bsc4I	CCNNNNNNNGG	2 cut(s)	208, 332
Bse1I	ACTGG	1 cut(s)	485
Bse21I	CCTNAGG	1 cut(s)	279
Bse3DI	GCAATG	1 cut(s)	411
BseBI	CCWGG	2 cut(s)	80, 209
BseDI	CCNNGG	3 cut(s)	177, 208, 331
BseLI	CCNNNNNNNGG	2 cut(s)	208, 332
BseMI	GCAATG	1 cut(s)	411
BseMII	CTCAG	2 cut(s)	68, 293
BseNI	ACTGG	1 cut(s)	485
BseRI	GAGGAG	4 cut(s)	134, 239, 267, 523
BseSI	GKGCMC	1 cut(s)	525
BseYI	CCCAGC	1 cut(s)	317
Bsh1236I	CGCG	2 cut(s)	103, 333
BshFI	GGCC	3 cut(s)	315, 352, 463
BsiHKAI	GWGCWC	2 cut(s)	492, 525
BsiHKCI	CYCGRG	1 cut(s)	371
BsiSI	CCGG	4 cut(s)	9, 202, 290, 349
BsiWI	CGTACG	1 cut(s)	228
BslI	CCNNNNNNNGG	2 cut(s)	208, 332
BsmAI	GTCTC	3 cut(s)	32, 57, 103
BsmBI	CGTCTC	2 cut(s)	57, 103
BsmI	GAATGC	1 cut(s)	74
BsnI	GGCC	3 cut(s)	315, 352, 463
Bso31I	GGTCTC	1 cut(s)	32
BsoBI	CYCGRG	1 cut(s)	371
Bsp1286I	GDGCHC	2 cut(s)	492, 525
Bsp143I	GATC	6 cut(s)	59, 240, 294, 335, 516, 528
BspACI	CCGC	9 cut(s)	14, 17, 33, 39, 65, 137, 151, 331, 333
BspANI	GGCC	3 cut(s)	315, 352, 463
BspCNI	CTCAG	2 cut(s)	67, 292
BspFNI	CGCG	2 cut(s)	103, 333
BspLI	GGNNCC	3 cut(s)	206, 316, 337
BspPI	GGATC	5 cut(s)	67, 248, 289, 330, 343
BspQI	GCTCTTC	1 cut(s)	497
BspTNI	GGTCTC	1 cut(s)	32
BsrBI	CCGCTC	2 cut(s)	14, 67
BsrDI	GCAATG	1 cut(s)	411
BsrI	ACTGG	1 cut(s)	485
BssECI	CCNNGG	3 cut(s)	177, 208, 331
BssMI	GATC	6 cut(s)	59, 240, 294, 335, 516, 528
BssNI	GRCGYC	3 cut(s)	96, 134, 364
BssT1I	CCWWGG	1 cut(s)	177
Bst2UI	CCWGG	2 cut(s)	80, 209
Bst6I	CTCTTC	1 cut(s)	497
BstACI	GRCGYC	3 cut(s)	96, 134, 364
BstAPI	GCANNNNNTGC	1 cut(s)	520
BstC8I	GCNNGC	4 cut(s)	19, 155, 159, 563
BstDEI	CTNAG	2 cut(s)	54, 279
BstDSI	CCRYGG	1 cut(s)	331
BstFNI	CGCG	2 cut(s)	103, 333
BstHHI	GCGC	1 cut(s)	105
BstKTI	GATC	6 cut(s)	62, 243, 297, 338, 519, 531
BstMAI	GTCTC	3 cut(s)	32, 57, 103
BstMBI	GATC	6 cut(s)	59, 240, 294, 335, 516, 528
BstMWI	GCNNNNNNNGC	5 cut(s)	38, 80, 102, 167, 520
BstNI	CCWGG	2 cut(s)	80, 209
BstSCI	CCNGG	4 cut(s)	78, 201, 207, 288
BstSLI	GKGCMC	1 cut(s)	525
BstUI	CGCG	2 cut(s)	103, 333
BstX2I	RGATCY	3 cut(s)	240, 294, 335
BstYI	RGATCY	3 cut(s)	240, 294, 335
Bsu36I	CCTNAGG	1 cut(s)	279
BsuRI	GGCC	3 cut(s)	315, 352, 463
BtgI	CCRYGG	1 cut(s)	331
BtsIMutI	CAGTG	1 cut(s)	442
Cac8I	GCNNGC	4 cut(s)	19, 155, 159, 563
CfoI	GCGC	1 cut(s)	105
Cfr13I	GGNCC	3 cut(s)	205, 314, 351
Cfr42I	CCGCGG	1 cut(s)	334
CseI	GACGC	4 cut(s)	80, 85, 142, 372
Csp6I	GTAC	3 cut(s)	229, 388, 535
CviAII	CATG	1 cut(s)	526
CviQI	GTAC	3 cut(s)	229, 388, 535
DdeI	CTNAG	2 cut(s)	54, 279
DpnI	GATC	6 cut(s)	61, 242, 296, 337, 518, 530
DpnII	GATC	6 cut(s)	59, 240, 294, 335, 516, 528
DraI	TTTAAA	1 cut(s)	379
DriI	GACNNNNNGTC	1 cut(s)	49
EaeI	YGGCCR	1 cut(s)	461
Eam1104I	CTCTTC	1 cut(s)	497
Eam1105I	GACNNNNNGTC	1 cut(s)	49
EarI	CTCTTC	1 cut(s)	497
Eco130I	CCWWGG	1 cut(s)	177
Eco31I	GGTCTC	1 cut(s)	32
Eco47I	GGWCC	1 cut(s)	205
Eco57I	CTGAAG	1 cut(s)	418
Eco81I	CCTNAGG	1 cut(s)	279
Eco88I	CYCGRG	1 cut(s)	371
EcoRII	CCWGG	2 cut(s)	78, 207
EcoT14I	CCWWGG	1 cut(s)	177
ErhI	CCWWGG	1 cut(s)	177
Esp3I	CGTCTC	2 cut(s)	57, 103
FaeI	CATG	1 cut(s)	529
FaiI	YATR	3 cut(s)	527, 543, 573
FatI	CATG	1 cut(s)	525
FauI	CCCGC	2 cut(s)	10, 338
FbaI	TGATCA	1 cut(s)	528
FblI	GTMKAC	2 cut(s)	183, 285
Fnu4HI	GCNGC	4 cut(s)	15, 33, 65, 137
Fsp4HI	GCNGC	4 cut(s)	15, 33, 65, 137
GlaI	GCGC	1 cut(s)	104
GluI	GCNGC	4 cut(s)	15, 33, 65, 137
GsaI	CCCAGC	1 cut(s)	321
HaeIII	GGCC	3 cut(s)	315, 352, 463
HapII	CCGG	4 cut(s)	9, 202, 290, 349
HgaI	GACGC	4 cut(s)	80, 85, 142, 372
HhaI	GCGC	1 cut(s)	105
Hin1I	GRCGYC	3 cut(s)	96, 134, 364
Hin1II	CATG	1 cut(s)	529
Hin6I	GCGC	1 cut(s)	103
HinP1I	GCGC	1 cut(s)	103
HincII	GTYRAC	1 cut(s)	286
HindII	GTYRAC	1 cut(s)	286
HindIII	AAGCTT	1 cut(s)	585
HinfI	GANTC	2 cut(s)	195, 213
HpaII	CCGG	4 cut(s)	9, 202, 290, 349
Hpy166II	GTNNAC	3 cut(s)	184, 286, 523
Hpy188I	TCNGA	3 cut(s)	194, 310, 340
Hpy188III	TCNNGA	1 cut(s)	421
Hpy8I	GTNNAC	3 cut(s)	184, 286, 523
Hpy99I	CGWCG	8 cut(s)	52, 74, 136, 176, 224, 314, 344, 366
HpyAV	CCTTC	1 cut(s)	364
HpyCH4IV	ACGT	2 cut(s)	186, 219
HpyCH4V	TGCA	4 cut(s)	411, 440, 523, 593
HpyF10VI	GCNNNNNNNGC	5 cut(s)	38, 80, 102, 167, 520
HpyF3I	CTNAG	2 cut(s)	54, 279
HpySE526I	ACGT	2 cut(s)	186, 219
Hsp92I	GRCGYC	3 cut(s)	96, 134, 364
Hsp92II	CATG	1 cut(s)	529
HspAI	GCGC	1 cut(s)	103
Ksp22I	TGATCA	1 cut(s)	528
KspI	CCGCGG	1 cut(s)	334
Kzo9I	GATC	6 cut(s)	59, 240, 294, 335, 516, 528
LguI	GCTCTTC	1 cut(s)	497
LmnI	GCTCC	1 cut(s)	11
MaeII	ACGT	2 cut(s)	186, 219
MalI	GATC	6 cut(s)	61, 242, 296, 337, 518, 530
MbiI	CCGCTC	2 cut(s)	14, 67
MboI	GATC	6 cut(s)	59, 240, 294, 335, 516, 528
MboII	GAAGA	3 cut(s)	424, 461, 484
MflI	RGATCY	3 cut(s)	240, 294, 335
MhlI	GDGCHC	2 cut(s)	492, 525
MlsI	TGGCCA	1 cut(s)	463
MluCI	AATT	3 cut(s)	380, 393, 465
MluNI	TGGCCA	1 cut(s)	463
MmeI	TCCRAC	2 cut(s)	333, 363
Mox20I	TGGCCA	1 cut(s)	463
MscI	TGGCCA	1 cut(s)	463
MseI	TTAA	1 cut(s)	378
Msp20I	TGGCCA	1 cut(s)	463
MspA1I	CMGCKG	2 cut(s)	153, 333
MspI	CCGG	4 cut(s)	9, 202, 290, 349
MspR9I	CCNGG	4 cut(s)	80, 203, 209, 290
Mva1269I	GAATGC	1 cut(s)	74
MvaI	CCWGG	2 cut(s)	80, 209
MvnI	CGCG	2 cut(s)	103, 333
MwoI	GCNNNNNNNGC	5 cut(s)	38, 80, 102, 167, 520
NciI	CCSGG	2 cut(s)	203, 290
NdeII	GATC	6 cut(s)	59, 240, 294, 335, 516, 528
NlaIII	CATG	1 cut(s)	529
NlaIV	GGNNCC	3 cut(s)	206, 316, 337
PciSI	GCTCTTC	1 cut(s)	497
PcsI	WCGNNNNNNNCGW	1 cut(s)	306
PctI	GAATGC	1 cut(s)	74
PfeI	GAWTC	2 cut(s)	195, 213
Pfl23II	CGTACG	1 cut(s)	228
PkrI	GCNGC	4 cut(s)	16, 34, 66, 138
Psp6I	CCWGG	2 cut(s)	78, 207
PspFI	CCCAGC	1 cut(s)	317
PspGI	CCWGG	2 cut(s)	78, 207
PspLI	CGTACG	1 cut(s)	228
PspN4I	GGNNCC	3 cut(s)	206, 316, 337
PspPI	GGNCC	3 cut(s)	205, 314, 351
PsuI	RGATCY	3 cut(s)	240, 294, 335
RsaI	GTAC	3 cut(s)	230, 389, 536
RsaNI	GTAC	3 cut(s)	229, 388, 535
SacII	CCGCGG	1 cut(s)	334
SalI	GTCGAC	1 cut(s)	284
SapI	GCTCTTC	1 cut(s)	497
SaqAI	TTAA	1 cut(s)	378
SatI	GCNGC	4 cut(s)	15, 33, 65, 137
Sau3AI	GATC	6 cut(s)	59, 240, 294, 335, 516, 528
Sau96I	GGNCC	3 cut(s)	205, 314, 351
ScrFI	CCNGG	4 cut(s)	80, 203, 209, 290
SduI	GDGCHC	2 cut(s)	492, 525
SetI	ASST	9 cut(s)	92, 144, 189, 222, 249, 285, 306, 572, 589
Sfr303I	CCGCGG	1 cut(s)	334
SgrBI	CCGCGG	1 cut(s)	334
SinI	GGWCC	1 cut(s)	205
Sse9I	AATT	3 cut(s)	380, 393, 465
SsiI	CCGC	9 cut(s)	14, 17, 33, 39, 65, 137, 151, 331, 333
StyD4I	CCNGG	4 cut(s)	78, 201, 207, 288
StyI	CCWWGG	1 cut(s)	177
TaiI	ACGT	2 cut(s)	189, 222
TaqI	TCGA	4 cut(s)	69, 123, 285, 361
TasI	AATT	3 cut(s)	380, 393, 465
TatI	WGTACW	1 cut(s)	534
TauI	GCSGC	4 cut(s)	17, 35, 67, 139
TfiI	GAWTC	2 cut(s)	195, 213
Tru1I	TTAA	1 cut(s)	378
Tru9I	TTAA	1 cut(s)	378
TscAI	CASTG	1 cut(s)	442
TspRI	CASTG	1 cut(s)	442
VneI	GTGCAC	1 cut(s)	521
VpaK11BI	GGWCC	1 cut(s)	205
XapI	RAATTY	1 cut(s)	380
XmiI	GTMKAC	2 cut(s)	183, 285

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.