Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0002664

Physical Location & Seq

Genomic Coordinates Reverse (-)

33504699 .. 33506002

Gene Structure 1304 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1321200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1014 bp

ATGACTTCCCTCTTTTCTCTCTTCCTCCTACAGTACATAATAATCGGGGCCGCCGTGCAACTCCGACCTCATTATTACTCTGAAACATGTCCGCAGGCCGAATCTGTGGTCCGAGATGTCATGAAGGTGGCTTTGATCAGAGAACCCCGGAGCCTTGCCTCTGTCATGCGCTTCCAATTCCATGATTGCTTTGTCAATGGTTGTGATGCATCTATGTTACTTGACGACACACCAACCATCCTTGGAGAAAAACTAGCCCTTGCAAACATAAATTCATTGAGATCTTACGAGGTTGTTGATGAAGCAAAAGAAGCCCTAGAGAAGGTCTGTCCGGGAGTTGTTTCTTGTGCAGACATCATAATCATGGCCTCTAGAGATGTTGTTGCCCTGACTGGAGGGCCTGATTGGGAAGTGAAGTTAGGAAGATTGGATAGCTTATCAGCTAGCCAGGAAGCGTCAGACAACGTTATGCCAAGTCCAAGAGCCAATGCAACCTTCCTCATTGACCTCTTTGCCAAATTTAATCTTTCGGCTGAAGATCTTGTTGCCCTTTCTGGGTCTCATTCCATTGGCCAAGCTCGGTGTTTCTCAATCATGTTTCGGCTGTACAACCAATCCGGCACTGGCCGGCCAGACCCCTCCATTGAACCAAAGTTTACAGAAAAGCTAAACAAGCTTTGCCCTTTAAACGTGGACCAAAACGTCACTGGAGACCTAGATGCTACGCCTGTAGTGTTTGACAACCAGTACTTCAAGGACTTGGTTTCCGGGAGAGGGTTTCTCAATTCGGATCAAACGCTTTTCACATTTCCGGAAACGAGGGGATTTGTAGAGCAGTTTAGCAGTGACCAAGAAGAGTTTTTCAAGGCCTTTGTTGAGGGGATGATAAAGATGGGAGATTTGCAGGTTGAGCAGGCTGGGGAGGTGAGAACAAATTGCCGGGTGGTTAATAGTCATCGTCCTGCGATTGCCAACACATGCAAGAGAATTGAAGGAATCGTAACGTTTGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006725 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009505 GO:0009698 GO:0009699 GO:0009791 GO:0009808 GO:0009809 GO:0009987 GO:0010228 GO:0019438 GO:0019748 GO:0022414 GO:0030312 GO:0032501 GO:0032502 GO:0044237 GO:0044249 GO:0044424 GO:0044444 GO:0044464 GO:0044550 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0071944 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

peroxidase

Protein Analysis

338

Amino Acids

37.27

Weight (kDa)

4.9

Isoelectric Point (pI)

36.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
peroxidase	PF00141	37 - 282	9.6e-75	Peroxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002664)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22420
fragaria_vesca	FvH4_1g20350 FvH4_1g20360 FvH4_1g20360
malus_domestica	MD01G1034400.v1.1 MD01G1034500.v1.1 MD01G1034900.v1.1 MD15G1321200.v1.1 MD15G1321300.v1.1 MD15G1321400.v1.1
prunus_persica	Prupe.6G191800_v2.0.a1 Prupe.6G191900_v2.0.a1 Prupe.6G192000_v2.0.a1
pyrus_communis	pycom01g06150 pycom01g06160 pycom01g06190 pycom15g28200 pycom15g28210
rosa_chinensis	RchiOBHm_Chr2g0112481 RchiOBHm_Chr2g0112491
rosa_laevigata	RLG00000017984 RLG00000017985
rosa_multiflora	Rmu_co8298115.1_g000001 Rmu_co8310909.1_g000001 Rmu_sc0013522.1_g000001 Rmu_sc0026466.1_g000001
rosa_roxburghii	Rroxscaffold_2G00131380 Rroxscaffold_2G00131390
rosa_rugosa	Rorug02G0181300 Rorug02G0181300
rosa_samantha	Rh2AG234300 Rh2AG234400 Rh2BG247900 Rh2BG248000 Rh2CG238900 Rh2CG239000 Rh2DG241900 Rh2DG242000
rosa_wichuraiana	Rw2G018150 Rw2G018160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	701
Acc36I	ACCTGC	1 cut(s)	895
AccIII	TCCGGA	1 cut(s)	811
AciI	CCGC	2 cut(s)	51, 92
AclI	AACGTT	2 cut(s)	465, 1004
AclWI	GGATC	1 cut(s)	798
AcoI	YGGCCR	3 cut(s)	571, 625, 629
AcsI	RAATTY	2 cut(s)	271, 518
AcuI	CTGAAG	1 cut(s)	555
AfaI	GTAC	3 cut(s)	35, 608, 749
AfiI	CCNNNNNNNGG	3 cut(s)	322, 555, 774
AflIII	ACRYGT	1 cut(s)	86
AgsI	TTSAA	4 cut(s)	647, 754, 865, 992
AjnI	CCWGG	1 cut(s)	447
AjuI	GAANNNNNNNTTGG	2 cut(s)	479, 511
AluBI	AGCT	5 cut(s)	435, 443, 578, 667, 676
AluI	AGCT	5 cut(s)	435, 443, 578, 667, 676
Alw26I	GTCTC	2 cut(s)	564, 705
AlwI	GGATC	1 cut(s)	798
Aor13HI	TCCGGA	1 cut(s)	811
AoxI	GGCC	8 cut(s)	48, 96, 366, 398, 571, 625, 629, 867
ApoI	RAATTY	2 cut(s)	271, 518
ArsI	GACNNNNNNTTYG	2 cut(s)	93, 125
AspLEI	GCGC	1 cut(s)	171
AspS9I	GGNCC	4 cut(s)	48, 109, 398, 694
AsuC2I	CCSGG	4 cut(s)	148, 333, 769, 941
AsuHPI	GGTGA	1 cut(s)	937
AsuNHI	GCTAGC	1 cut(s)	443
AvaII	GGWCC	2 cut(s)	109, 694
BalI	TGGCCA	1 cut(s)	573
BccI	CCATC	2 cut(s)	245, 886
BceAI	ACGGC	1 cut(s)	38
BciT130I	CCWGG	1 cut(s)	449
BclI	TGATCA	1 cut(s)	135
BcnI	CCSGG	4 cut(s)	148, 333, 769, 941
BcoDI	GTCTC	2 cut(s)	564, 705
BfaI	CTAG	5 cut(s)	254, 317, 372, 444, 716
BfmI	CTRYAG	2 cut(s)	29, 729
BfuAI	ACCTGC	1 cut(s)	895
BglII	AGATCT	2 cut(s)	281, 538
BisI	GCNGC	1 cut(s)	51
BlsI	GCNGC	1 cut(s)	52
BmcAI	AGTACT	1 cut(s)	749
Bme1390I	CCNGG	5 cut(s)	148, 333, 449, 769, 941
Bme18I	GGWCC	2 cut(s)	109, 694
BmgT120I	GGNCC	4 cut(s)	48, 109, 398, 694
BmiI	GGNNCC	2 cut(s)	49, 152
BmrFI	CCNGG	5 cut(s)	148, 333, 449, 769, 941
BmsI	GCATC	3 cut(s)	196, 218, 709
BmtI	GCTAGC	1 cut(s)	447
BplI	GAGNNNNNCTC	2 cut(s)	765, 797
BpmI	CTGGAG	2 cut(s)	414, 729
BpuMI	CCSGG	4 cut(s)	148, 333, 769, 941
BsaI	GGTCTC	2 cut(s)	564, 705
BsaJI	CCNNGG	2 cut(s)	146, 241
BsaWI	WCCGGW	1 cut(s)	811
Bsc4I	CCNNNNNNNGG	3 cut(s)	322, 555, 774
Bse118I	RCCGGY	1 cut(s)	627
Bse1I	ACTGG	4 cut(s)	397, 628, 712, 745
BseAI	TCCGGA	1 cut(s)	811
BseBI	CCWGG	1 cut(s)	449
BseDI	CCNNGG	2 cut(s)	146, 241
BseGI	GGATG	2 cut(s)	237, 888
BseLI	CCNNNNNNNGG	3 cut(s)	322, 555, 774
BseNI	ACTGG	4 cut(s)	397, 628, 712, 745
BseYI	CCCAGC	1 cut(s)	917
BsgI	GTGCAG	1 cut(s)	369
BshFI	GGCC	8 cut(s)	50, 98, 368, 400, 573, 627, 631, 869
BsiSI	CCGG	7 cut(s)	148, 332, 618, 628, 768, 812, 940
BslI	CCNNNNNNNGG	3 cut(s)	322, 555, 774
BsmAI	GTCTC	2 cut(s)	564, 705
BsnI	GGCC	8 cut(s)	50, 98, 368, 400, 573, 627, 631, 869
Bso31I	GGTCTC	2 cut(s)	564, 705
Bsp13I	TCCGGA	1 cut(s)	811
Bsp1407I	TGTACA	1 cut(s)	606
Bsp143I	GATC	4 cut(s)	135, 281, 538, 790
BspACI	CCGC	2 cut(s)	51, 92
BspANI	GGCC	8 cut(s)	50, 98, 368, 400, 573, 627, 631, 869
BspEI	TCCGGA	1 cut(s)	811
BspHI	TCATGA	1 cut(s)	120
BspLI	GGNNCC	2 cut(s)	49, 152
BspMI	ACCTGC	1 cut(s)	895
BspOI	GCTAGC	1 cut(s)	447
BspPI	GGATC	1 cut(s)	798
BspTNI	GGTCTC	2 cut(s)	564, 705
BsrFI	RCCGGY	1 cut(s)	627
BsrGI	TGTACA	1 cut(s)	606
BsrI	ACTGG	4 cut(s)	397, 628, 712, 745
BssAI	RCCGGY	1 cut(s)	627
BssECI	CCNNGG	2 cut(s)	146, 241
BssMI	GATC	4 cut(s)	135, 281, 538, 790
BssT1I	CCWWGG	1 cut(s)	241
Bst2UI	CCWGG	1 cut(s)	449
Bst4CI	ACNGT	1 cut(s)	33
Bst6I	CTCTTC	2 cut(s)	26, 849
BstAUI	TGTACA	1 cut(s)	606
BstC8I	GCNNGC	4 cut(s)	96, 445, 629, 915
BstENI	CCTNNNNNAGG	1 cut(s)	320
BstF5I	GGATG	2 cut(s)	237, 888
BstHHI	GCGC	1 cut(s)	171
BstKTI	GATC	4 cut(s)	138, 284, 541, 793
BstMAI	GTCTC	2 cut(s)	564, 705
BstMBI	GATC	4 cut(s)	135, 281, 538, 790
BstMWI	GCNNNNNNNGC	3 cut(s)	311, 673, 910
BstNI	CCWGG	1 cut(s)	449
BstNSI	RCATGY	2 cut(s)	90, 981
BstSCI	CCNGG	5 cut(s)	146, 331, 447, 767, 939
BstSFI	CTRYAG	2 cut(s)	29, 729
BstX2I	RGATCY	2 cut(s)	281, 538
BstYI	RGATCY	2 cut(s)	281, 538
BsuRI	GGCC	8 cut(s)	50, 98, 368, 400, 573, 627, 631, 869
BtsCI	GGATG	2 cut(s)	237, 888
BtsI	GCAGTG	1 cut(s)	850
BtsIMutI	CAGTG	3 cut(s)	621, 705, 850
BveI	ACCTGC	1 cut(s)	895
Cac8I	GCNNGC	4 cut(s)	96, 445, 629, 915
CciI	TCATGA	1 cut(s)	120
CfoI	GCGC	1 cut(s)	171
Cfr10I	RCCGGY	1 cut(s)	627
Cfr13I	GGNCC	4 cut(s)	48, 109, 398, 694
CseI	GACGC	1 cut(s)	444
Csp6I	GTAC	3 cut(s)	34, 607, 748
CviAII	CATG	7 cut(s)	87, 121, 166, 182, 364, 595, 978
CviQI	GTAC	3 cut(s)	34, 607, 748
DpnI	GATC	4 cut(s)	137, 283, 540, 792
DpnII	GATC	4 cut(s)	135, 281, 538, 790
DraI	TTTAAA	1 cut(s)	687
DrdI	GACNNNNNNGTC	1 cut(s)	701
DseDI	GACNNNNNNGTC	1 cut(s)	701
EaeI	YGGCCR	3 cut(s)	571, 625, 629
Eam1104I	CTCTTC	2 cut(s)	26, 849
EarI	CTCTTC	2 cut(s)	26, 849
Eco130I	CCWWGG	1 cut(s)	241
Eco147I	AGGCCT	1 cut(s)	869
Eco31I	GGTCTC	2 cut(s)	564, 705
Eco47I	GGWCC	2 cut(s)	109, 694
Eco57I	CTGAAG	1 cut(s)	555
EcoNI	CCTNNNNNAGG	1 cut(s)	320
EcoO109I	RGGNCCY	1 cut(s)	398
EcoRII	CCWGG	1 cut(s)	447
EcoT14I	CCWWGG	1 cut(s)	241
EcoT22I	ATGCAT	1 cut(s)	211
ErhI	CCWWGG	1 cut(s)	241
FaeI	CATG	7 cut(s)	90, 124, 169, 185, 367, 598, 981
FatI	CATG	7 cut(s)	86, 120, 165, 181, 363, 594, 977
FbaI	TGATCA	1 cut(s)	135
Fnu4HI	GCNGC	1 cut(s)	51
FokI	GGATG	2 cut(s)	224, 895
FseI	GGCCGGCC	1 cut(s)	631
Fsp4HI	GCNGC	1 cut(s)	51
FspBI	CTAG	5 cut(s)	254, 317, 372, 444, 716
GlaI	GCGC	1 cut(s)	170
GluI	GCNGC	1 cut(s)	51
GsaI	CCCAGC	1 cut(s)	921
GsuI	CTGGAG	2 cut(s)	414, 729
HaeIII	GGCC	8 cut(s)	50, 98, 368, 400, 573, 627, 631, 869
HapII	CCGG	7 cut(s)	148, 332, 618, 628, 768, 812, 940
HgaI	GACGC	1 cut(s)	444
HhaI	GCGC	1 cut(s)	171
Hin1II	CATG	7 cut(s)	90, 124, 169, 185, 367, 598, 981
Hin6I	GCGC	1 cut(s)	169
HinP1I	GCGC	1 cut(s)	169
HindIII	AAGCTT	1 cut(s)	674
HinfI	GANTC	2 cut(s)	101, 996
HpaII	CCGG	7 cut(s)	148, 332, 618, 628, 768, 812, 940
HphI	GGTGA	1 cut(s)	937
Hpy166II	GTNNAC	2 cut(s)	657, 694
Hpy188I	TCNGA	6 cut(s)	65, 82, 113, 140, 460, 790
Hpy188III	TCNNGA	3 cut(s)	121, 372, 812
Hpy8I	GTNNAC	2 cut(s)	657, 694
HpyAV	CCTTC	4 cut(s)	118, 316, 505, 986
HpyCH4III	ACNGT	1 cut(s)	33
HpyCH4IV	ACGT	4 cut(s)	465, 690, 702, 1004
HpyCH4V	TGCA	7 cut(s)	58, 209, 263, 350, 491, 904, 981
HpyF10VI	GCNNNNNNNGC	3 cut(s)	311, 673, 910
HpySE526I	ACGT	4 cut(s)	465, 690, 702, 1004
Hsp92II	CATG	7 cut(s)	90, 124, 169, 185, 367, 598, 981
HspAI	GCGC	1 cut(s)	169
Kpn2I	TCCGGA	1 cut(s)	811
KroI	GCCGGC	1 cut(s)	627
KroNI	GCCGGC	1 cut(s)	629
Ksp22I	TGATCA	1 cut(s)	135
Kzo9I	GATC	4 cut(s)	135, 281, 538, 790
LmnI	GCTCC	1 cut(s)	150
LweI	GCATC	3 cut(s)	196, 218, 709
MaeI	CTAG	5 cut(s)	254, 317, 372, 444, 716
MaeII	ACGT	4 cut(s)	465, 690, 702, 1004
MaeIII	GTNAC	4 cut(s)	216, 703, 845, 1000
MalI	GATC	4 cut(s)	137, 283, 540, 792
MboI	GATC	4 cut(s)	135, 281, 538, 790
MboII	GAAGA	4 cut(s)	13, 435, 548, 866
MflI	RGATCY	2 cut(s)	281, 538
MlsI	TGGCCA	1 cut(s)	573
MluCI	AATT	6 cut(s)	176, 271, 518, 784, 934, 987
MluNI	TGGCCA	1 cut(s)	573
MmeI	TCCRAC	1 cut(s)	88
Mox20I	TGGCCA	1 cut(s)	573
Mph1103I	ATGCAT	1 cut(s)	211
MroI	TCCGGA	1 cut(s)	811
MroNI	GCCGGC	1 cut(s)	627
MscI	TGGCCA	1 cut(s)	573
MseI	TTAA	3 cut(s)	522, 686, 948
MslI	CAYNNNNRTG	2 cut(s)	125, 362
Msp20I	TGGCCA	1 cut(s)	573
MspI	CCGG	7 cut(s)	148, 332, 618, 628, 768, 812, 940
MspR9I	CCNGG	5 cut(s)	148, 333, 449, 769, 941
MvaI	CCWGG	1 cut(s)	449
MwoI	GCNNNNNNNGC	3 cut(s)	311, 673, 910
NaeI	GCCGGC	1 cut(s)	629
NciI	CCSGG	4 cut(s)	148, 333, 769, 941
NdeII	GATC	4 cut(s)	135, 281, 538, 790
NgoMIV	GCCGGC	1 cut(s)	627
NheI	GCTAGC	1 cut(s)	443
NlaIII	CATG	7 cut(s)	90, 124, 169, 185, 367, 598, 981
NlaIV	GGNNCC	2 cut(s)	49, 152
NmuCI	GTSAC	2 cut(s)	703, 845
NsiI	ATGCAT	1 cut(s)	211
NspI	RCATGY	2 cut(s)	90, 981
PagI	TCATGA	1 cut(s)	120
PceI	AGGCCT	1 cut(s)	869
PciI	ACATGT	1 cut(s)	86
PcsI	WCGNNNNNNNCGW	1 cut(s)	51
PdiI	GCCGGC	1 cut(s)	629
PfeI	GAWTC	2 cut(s)	101, 996
PfoI	TCCNGGA	2 cut(s)	331, 767
PkrI	GCNGC	1 cut(s)	52
PscI	ACATGT	1 cut(s)	86
Psp1406I	AACGTT	2 cut(s)	465, 1004
Psp6I	CCWGG	1 cut(s)	447
PspFI	CCCAGC	1 cut(s)	917
PspGI	CCWGG	1 cut(s)	447
PspN4I	GGNNCC	2 cut(s)	49, 152
PspPI	GGNCC	4 cut(s)	48, 109, 398, 694
PsuI	RGATCY	2 cut(s)	281, 538
RigI	GGCCGGCC	1 cut(s)	631
RsaI	GTAC	3 cut(s)	35, 608, 749
RsaNI	GTAC	3 cut(s)	34, 607, 748
RseI	CAYNNNNRTG	2 cut(s)	125, 362
SaqAI	TTAA	3 cut(s)	522, 686, 948
SatI	GCNGC	1 cut(s)	51
Sau3AI	GATC	4 cut(s)	135, 281, 538, 790
Sau96I	GGNCC	4 cut(s)	48, 109, 398, 694
ScaI	AGTACT	1 cut(s)	749
ScrFI	CCNGG	5 cut(s)	148, 333, 449, 769, 941
SfaNI	GCATC	3 cut(s)	196, 218, 709
SfcI	CTRYAG	2 cut(s)	29, 729
SinI	GGWCC	2 cut(s)	109, 694
SmiMI	CAYNNNNRTG	2 cut(s)	125, 362
Sse9I	AATT	6 cut(s)	176, 271, 518, 784, 934, 987
SseBI	AGGCCT	1 cut(s)	869
SsiI	CCGC	2 cut(s)	51, 92
SspMI	CTAG	5 cut(s)	254, 317, 372, 444, 716
StuI	AGGCCT	1 cut(s)	869
StyD4I	CCNGG	5 cut(s)	146, 331, 447, 767, 939
StyI	CCWWGG	1 cut(s)	241
TaaI	ACNGT	1 cut(s)	33
TaiI	ACGT	4 cut(s)	468, 693, 705, 1007
TasI	AATT	6 cut(s)	176, 271, 518, 784, 934, 987
TatI	WGTACW	3 cut(s)	33, 606, 747
TauI	GCSGC	1 cut(s)	53
TfiI	GAWTC	2 cut(s)	101, 996
Tru1I	TTAA	3 cut(s)	522, 686, 948
Tru9I	TTAA	3 cut(s)	522, 686, 948
TscAI	CASTG	3 cut(s)	628, 712, 850
TseFI	GTSAC	2 cut(s)	703, 845
Tsp45I	GTSAC	2 cut(s)	703, 845
TspDTI	ATGAA	3 cut(s)	137, 264, 315
TspRI	CASTG	3 cut(s)	628, 712, 850
VpaK11BI	GGWCC	2 cut(s)	109, 694
XagI	CCTNNNNNAGG	1 cut(s)	320
XapI	RAATTY	2 cut(s)	271, 518
XbaI	TCTAGA	1 cut(s)	371
XceI	RCATGY	2 cut(s)	90, 981
XcmI	CCANNNNNNNNNTGG	2 cut(s)	620, 704
XspI	CTAG	5 cut(s)	254, 317, 372, 444, 716
ZrmI	AGTACT	1 cut(s)	749
Zsp2I	ATGCAT	1 cut(s)	211

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.