Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0002664

Physical Location & Seq

Genomic Coordinates Forward (+)

11723376 .. 11725311

Gene Structure 1936 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1034400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1014 bp

ATGTCACCTCTCTTCTTCCTCCCCTTCCTCCTCCTCCTCCTCCTGCCCATAGCCGTGCCCGCCGCGCAACTCCGCCCCGGCCATTACTCCGAAACATGCCCGGAAGCAGAATCCATTATCCGGGACGTCATGAAGAAGGCTCTAGTCAAAGAGCCCCGCAGCCTTGCCTCTGTCATGCGCTTCCAATTCCATGACTGCTTTGTGAATGGCTGTGATGGTTCTATGTTACTTGATGACACGCCAACAATGCTTGGAGAAAAACTTTCCCTTTCAAATATAAATTCTCTGAGATCTTATGAGGTGGTTGATGAAGCCAAGGAAGCCTTGGAGAAGGTCTGTCCTGGAGTTGTTTCTTGCGCTGATATAGTAATCATGGCGGCTCGAGACGCTGTTGCTCTGACGGGAGGACCTGATTGGGAAGTGAAGTTAGGGAGATTGGATAGCTTATCAGCTAGCCAGGAAGCATCAGACAACATTATGCCAAGTCCAAGAGCCAACGCAAGCTCCCTCATTGACCTCTTTGCCAAATTTAATCTTTCTGTCAAAGATCTCGTTGCCCTTTCGGGGTCACACTCCATTGGCCAAGGTAGGTGCTTTTCCATCATGTTTCGGCTGTACAACCAATCCGGCACTGGGAGGCCCGACCCTGCCTTTGAACCAAAGTATAGGGAAAAGTTGAGCAGGCTTTGCCCTTTGAACGTGGACCAAAATGTGACCGGAGACCTGGATGCTACACCTTTGGTATTTGATAACCAGTACTTCAAGGACTTGGTTTCGGGGAGAGGCTTTCTGAATTCTGATCAGACACTTTACACATATCCACAAACTAGGACATATGTTAAGCAGTTTAGCAGTAAACAAGGAGAATTTTTCAAGGCCTTTGTTGAAGGGATGATAAAGATGGGTGACTTGCAGTTTGATCAGCCTGGGGAGGTACGAAGGAACTGTAGGGTGGTTAATCATCGTCCTGTCAACACGCTTTGGAATCTTGGGGGGATGAATCCGACTTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006725 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009505 GO:0009698 GO:0009699 GO:0009791 GO:0009808 GO:0009809 GO:0009987 GO:0010228 GO:0019438 GO:0019748 GO:0022414 GO:0030312 GO:0032501 GO:0032502 GO:0044237 GO:0044249 GO:0044424 GO:0044444 GO:0044464 GO:0044550 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0071944 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

peroxidase

Protein Analysis

338

Amino Acids

37.4

Weight (kDa)

5.89

Isoelectric Point (pI)

39.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
peroxidase	PF00141	40 - 285	8.6e-76	Peroxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002664)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22420
fragaria_vesca	FvH4_1g20350 FvH4_1g20360 FvH4_1g20360
malus_domestica	MD01G1034400.v1.1 MD01G1034500.v1.1 MD01G1034900.v1.1 MD15G1321200.v1.1 MD15G1321300.v1.1 MD15G1321400.v1.1
prunus_persica	Prupe.6G191800_v2.0.a1 Prupe.6G191900_v2.0.a1 Prupe.6G192000_v2.0.a1
pyrus_communis	pycom01g06150 pycom01g06160 pycom01g06190 pycom15g28200 pycom15g28210
rosa_chinensis	RchiOBHm_Chr2g0112481 RchiOBHm_Chr2g0112491
rosa_laevigata	RLG00000017984 RLG00000017985
rosa_multiflora	Rmu_co8298115.1_g000001 Rmu_co8310909.1_g000001 Rmu_sc0013522.1_g000001 Rmu_sc0026466.1_g000001
rosa_roxburghii	Rroxscaffold_2G00131380 Rroxscaffold_2G00131390
rosa_rugosa	Rorug02G0181300 Rorug02G0181300
rosa_samantha	Rh2AG234300 Rh2AG234400 Rh2BG247900 Rh2BG248000 Rh2CG238900 Rh2CG239000 Rh2DG241900 Rh2DG242000
rosa_wichuraiana	Rw2G018150 Rw2G018160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	129
AccII	CGCG	1 cut(s)	65
AciI	CCGC	5 cut(s)	60, 63, 73, 157, 377
AcoI	YGGCCR	2 cut(s)	79, 580
AcsI	RAATTY	4 cut(s)	280, 527, 793, 866
AcyI	GRCGYC	1 cut(s)	126
AfaI	GTAC	3 cut(s)	617, 758, 936
AfiI	CCNNNNNNNGG	3 cut(s)	120, 564, 633
AgsI	TTSAA	6 cut(s)	273, 656, 697, 763, 874, 887
AjnI	CCWGG	4 cut(s)	340, 456, 723, 925
AluBI	AGCT	3 cut(s)	444, 452, 504
AluI	AGCT	3 cut(s)	444, 452, 504
Alw26I	GTCTC	2 cut(s)	378, 714
Ama87I	CYCGRG	1 cut(s)	381
AoxI	GGCC	4 cut(s)	79, 580, 638, 876
ApeKI	GCWGC	1 cut(s)	159
ApoI	RAATTY	4 cut(s)	280, 527, 793, 866
ArsI	GACNNNNNNTTYG	4 cut(s)	635, 667, 899, 931
AspLEI	GCGC	3 cut(s)	67, 180, 359
AspS9I	GGNCC	3 cut(s)	407, 639, 703
AsuC2I	CCSGG	3 cut(s)	78, 101, 122
AsuHPI	GGTGA	1 cut(s)	917
AsuNHI	GCTAGC	1 cut(s)	452
AvaI	CYCGRG	1 cut(s)	381
AvaII	GGWCC	2 cut(s)	407, 703
BaeGI	GKGCMC	1 cut(s)	60
BalI	TGGCCA	1 cut(s)	582
BanII	GRGCYC	1 cut(s)	156
BbvI	GCAGC	1 cut(s)	171
BccI	CCATC	3 cut(s)	209, 608, 895
BceAI	ACGGC	1 cut(s)	38
BciT130I	CCWGG	4 cut(s)	342, 458, 725, 927
BclI	TGATCA	2 cut(s)	799, 919
BcnI	CCSGG	3 cut(s)	78, 101, 122
BcoDI	GTCTC	2 cut(s)	378, 714
BfaI	CTAG	3 cut(s)	143, 453, 828
BfmI	CTRYAG	1 cut(s)	946
BglII	AGATCT	2 cut(s)	290, 547
BisI	GCNGC	3 cut(s)	63, 160, 378
BlsI	GCNGC	3 cut(s)	64, 161, 379
BmcAI	AGTACT	1 cut(s)	758
Bme1390I	CCNGG	7 cut(s)	78, 101, 122, 342, 458, 725, 927
Bme18I	GGWCC	2 cut(s)	407, 703
BmeT110I	CYCGRG	1 cut(s)	381
BmgT120I	GGNCC	3 cut(s)	407, 639, 703
BmrFI	CCNGG	7 cut(s)	78, 101, 122, 342, 458, 725, 927
BmrI	ACTGGG	1 cut(s)	642
BmsI	GCATC	2 cut(s)	473, 718
BmtI	GCTAGC	1 cut(s)	456
BmuI	ACTGGG	1 cut(s)	642
BpmI	CTGGAG	1 cut(s)	363
BpuMI	CCSGG	3 cut(s)	78, 101, 122
BsaHI	GRCGYC	1 cut(s)	126
BsaI	GGTCTC	1 cut(s)	714
BsaJI	CCNNGG	5 cut(s)	76, 315, 324, 583, 926
BsaWI	WCCGGW	1 cut(s)	716
BsaXI	ACNNNNNCTCC	2 cut(s)	488, 518
Bsc4I	CCNNNNNNNGG	3 cut(s)	120, 564, 633
Bse1I	ACTGG	2 cut(s)	637, 754
BseBI	CCWGG	4 cut(s)	342, 458, 725, 927
BseDI	CCNNGG	5 cut(s)	76, 315, 324, 583, 926
BseGI	GGATG	3 cut(s)	733, 897, 1002
BseLI	CCNNNNNNNGG	3 cut(s)	120, 564, 633
BseMII	CTCAG	1 cut(s)	278
BseNI	ACTGG	2 cut(s)	637, 754
BseRI	GAGGAG	4 cut(s)	20, 23, 26, 29
BseSI	GKGCMC	1 cut(s)	60
BseXI	GCAGC	1 cut(s)	171
Bsh1236I	CGCG	1 cut(s)	65
BshFI	GGCC	4 cut(s)	81, 582, 640, 878
BsiHKCI	CYCGRG	1 cut(s)	381
BsiSI	CCGG	5 cut(s)	78, 101, 121, 627, 717
BslFI	GGGAC	1 cut(s)	137
BslI	CCNNNNNNNGG	3 cut(s)	120, 564, 633
BsmAI	GTCTC	2 cut(s)	378, 714
BsmBI	CGTCTC	1 cut(s)	378
BsmFI	GGGAC	1 cut(s)	137
BsnI	GGCC	4 cut(s)	81, 582, 640, 878
Bso31I	GGTCTC	1 cut(s)	714
BsoBI	CYCGRG	1 cut(s)	381
Bsp1286I	GDGCHC	2 cut(s)	60, 156
Bsp1407I	TGTACA	1 cut(s)	615
Bsp143I	GATC	4 cut(s)	290, 547, 799, 919
BspACI	CCGC	5 cut(s)	60, 63, 73, 157, 377
BspANI	GGCC	4 cut(s)	81, 582, 640, 878
BspCNI	CTCAG	1 cut(s)	279
BspFNI	CGCG	1 cut(s)	65
BspHI	TCATGA	1 cut(s)	129
BspOI	GCTAGC	1 cut(s)	456
BspTNI	GGTCTC	1 cut(s)	714
BsrGI	TGTACA	1 cut(s)	615
BsrI	ACTGG	2 cut(s)	637, 754
BssECI	CCNNGG	5 cut(s)	76, 315, 324, 583, 926
BssMI	GATC	4 cut(s)	290, 547, 799, 919
BssNI	GRCGYC	1 cut(s)	126
BssT1I	CCWWGG	3 cut(s)	315, 324, 583
Bst2UI	CCWGG	4 cut(s)	342, 458, 725, 927
Bst4CI	ACNGT	1 cut(s)	947
Bst6I	CTCTTC	1 cut(s)	17
BstACI	GRCGYC	1 cut(s)	126
BstAPI	GCANNNNNTGC	1 cut(s)	687
BstAUI	TGTACA	1 cut(s)	615
BstC8I	GCNNGC	4 cut(s)	60, 454, 502, 683
BstDEI	CTNAG	1 cut(s)	287
BstF5I	GGATG	3 cut(s)	733, 897, 1002
BstFNI	CGCG	1 cut(s)	65
BstHHI	GCGC	3 cut(s)	67, 180, 359
BstKTI	GATC	4 cut(s)	293, 550, 802, 922
BstMAI	GTCTC	2 cut(s)	378, 714
BstMBI	GATC	4 cut(s)	290, 547, 799, 919
BstMWI	GCNNNNNNNGC	6 cut(s)	59, 64, 247, 320, 386, 687
BstNI	CCWGG	4 cut(s)	342, 458, 725, 927
BstNSI	RCATGY	1 cut(s)	99
BstSCI	CCNGG	7 cut(s)	76, 99, 120, 340, 456, 723, 925
BstSFI	CTRYAG	1 cut(s)	946
BstSLI	GKGCMC	1 cut(s)	60
BstUI	CGCG	1 cut(s)	65
BstV1I	GCAGC	1 cut(s)	171
BstX2I	RGATCY	2 cut(s)	290, 547
BstYI	RGATCY	2 cut(s)	290, 547
BsuRI	GGCC	4 cut(s)	81, 582, 640, 878
BtsCI	GGATG	3 cut(s)	733, 897, 1002
BtsIMutI	CAGTG	1 cut(s)	630
Cac8I	GCNNGC	4 cut(s)	60, 454, 502, 683
CciI	TCATGA	1 cut(s)	129
CfoI	GCGC	3 cut(s)	67, 180, 359
Cfr13I	GGNCC	3 cut(s)	407, 639, 703
CseI	GACGC	1 cut(s)	395
Csp6I	GTAC	3 cut(s)	616, 757, 935
CviAII	CATG	6 cut(s)	96, 130, 175, 191, 373, 604
CviQI	GTAC	3 cut(s)	616, 757, 935
DdeI	CTNAG	1 cut(s)	287
DpnI	GATC	4 cut(s)	292, 549, 801, 921
DpnII	GATC	4 cut(s)	290, 547, 799, 919
EaeI	YGGCCR	2 cut(s)	79, 580
Eam1104I	CTCTTC	1 cut(s)	17
EarI	CTCTTC	1 cut(s)	17
EciI	GGCGGA	1 cut(s)	62
Eco130I	CCWWGG	3 cut(s)	315, 324, 583
Eco147I	AGGCCT	1 cut(s)	878
Eco24I	GRGCYC	1 cut(s)	156
Eco31I	GGTCTC	1 cut(s)	714
Eco47I	GGWCC	2 cut(s)	407, 703
Eco88I	CYCGRG	1 cut(s)	381
EcoO109I	RGGNCCY	1 cut(s)	407
EcoRI	GAATTC	1 cut(s)	793
EcoRII	CCWGG	4 cut(s)	340, 456, 723, 925
EcoT14I	CCWWGG	3 cut(s)	315, 324, 583
EcoT38I	GRGCYC	1 cut(s)	156
ErhI	CCWWGG	3 cut(s)	315, 324, 583
Esp3I	CGTCTC	1 cut(s)	378
FaeI	CATG	6 cut(s)	99, 133, 178, 194, 376, 607
FalI	AAGNNNNNCTT	2 cut(s)	308, 340
FaqI	GGGAC	1 cut(s)	137
FatI	CATG	6 cut(s)	95, 129, 174, 190, 372, 603
FauI	CCCGC	2 cut(s)	67, 164
FauNDI	CATATG	1 cut(s)	835
FbaI	TGATCA	2 cut(s)	799, 919
Fnu4HI	GCNGC	3 cut(s)	63, 160, 378
FokI	GGATG	3 cut(s)	740, 904, 1009
FriOI	GRGCYC	1 cut(s)	156
Fsp4HI	GCNGC	3 cut(s)	63, 160, 378
FspBI	CTAG	3 cut(s)	143, 453, 828
GlaI	GCGC	3 cut(s)	66, 179, 358
GluI	GCNGC	3 cut(s)	63, 160, 378
GsuI	CTGGAG	1 cut(s)	363
HaeIII	GGCC	4 cut(s)	81, 582, 640, 878
HapII	CCGG	5 cut(s)	78, 101, 121, 627, 717
HgaI	GACGC	1 cut(s)	395
HhaI	GCGC	3 cut(s)	67, 180, 359
Hin1I	GRCGYC	1 cut(s)	126
Hin1II	CATG	6 cut(s)	99, 133, 178, 194, 376, 607
Hin6I	GCGC	3 cut(s)	65, 178, 357
HinP1I	GCGC	3 cut(s)	65, 178, 357
HincII	GTYRAC	1 cut(s)	973
HindII	GTYRAC	1 cut(s)	973
HinfI	GANTC	3 cut(s)	110, 985, 1000
HpaII	CCGG	5 cut(s)	78, 101, 121, 627, 717
HphI	GGTGA	1 cut(s)	917
Hpy166II	GTNNAC	3 cut(s)	703, 857, 973
Hpy188I	TCNGA	9 cut(s)	91, 288, 399, 469, 792, 799, 804, 1005, 1013
Hpy188III	TCNNGA	2 cut(s)	130, 383
Hpy8I	GTNNAC	3 cut(s)	703, 857, 973
HpyAV	CCTTC	5 cut(s)	34, 130, 325, 881, 933
HpyCH4III	ACNGT	1 cut(s)	947
HpyCH4IV	ACGT	2 cut(s)	126, 699
HpyCH4V	TGCA	1 cut(s)	913
HpyF10VI	GCNNNNNNNGC	6 cut(s)	59, 64, 247, 320, 386, 687
HpyF3I	CTNAG	1 cut(s)	287
HpySE526I	ACGT	2 cut(s)	126, 699
Hsp92I	GRCGYC	1 cut(s)	126
Hsp92II	CATG	6 cut(s)	99, 133, 178, 194, 376, 607
HspAI	GCGC	3 cut(s)	65, 178, 357
Ksp22I	TGATCA	2 cut(s)	799, 919
Kzo9I	GATC	4 cut(s)	290, 547, 799, 919
LmnI	GCTCC	1 cut(s)	509
Lsp1109I	GCAGC	1 cut(s)	171
LweI	GCATC	2 cut(s)	473, 718
MaeI	CTAG	3 cut(s)	143, 453, 828
MaeII	ACGT	2 cut(s)	126, 699
MaeIII	GTNAC	5 cut(s)	3, 225, 567, 712, 905
MalI	GATC	4 cut(s)	292, 549, 801, 921
MboI	GATC	4 cut(s)	290, 547, 799, 919
MboII	GAAGA	3 cut(s)	4, 7, 145
MflI	RGATCY	2 cut(s)	290, 547
MhlI	GDGCHC	2 cut(s)	60, 156
MlsI	TGGCCA	1 cut(s)	582
MluCI	AATT	5 cut(s)	185, 280, 527, 793, 866
MluNI	TGGCCA	1 cut(s)	582
Mox20I	TGGCCA	1 cut(s)	582
MscI	TGGCCA	1 cut(s)	582
MseI	TTAA	3 cut(s)	531, 840, 957
MslI	CAYNNNNRTG	1 cut(s)	53
Msp20I	TGGCCA	1 cut(s)	582
MspI	CCGG	5 cut(s)	78, 101, 121, 627, 717
MspR9I	CCNGG	7 cut(s)	78, 101, 122, 342, 458, 725, 927
MvaI	CCWGG	4 cut(s)	342, 458, 725, 927
MvnI	CGCG	1 cut(s)	65
MwoI	GCNNNNNNNGC	6 cut(s)	59, 64, 247, 320, 386, 687
NciI	CCSGG	3 cut(s)	78, 101, 122
NdeI	CATATG	1 cut(s)	835
NdeII	GATC	4 cut(s)	290, 547, 799, 919
NheI	GCTAGC	1 cut(s)	452
NlaIII	CATG	6 cut(s)	99, 133, 178, 194, 376, 607
NmuCI	GTSAC	4 cut(s)	3, 567, 712, 905
NspI	RCATGY	1 cut(s)	99
PaeR7I	CTCGAG	1 cut(s)	381
PagI	TCATGA	1 cut(s)	129
PceI	AGGCCT	1 cut(s)	878
PfeI	GAWTC	3 cut(s)	110, 985, 1000
PfoI	TCCNGGA	2 cut(s)	120, 340
PkrI	GCNGC	3 cut(s)	64, 161, 379
PpuMI	RGGWCCY	1 cut(s)	407
Psp5II	RGGWCCY	1 cut(s)	407
Psp6I	CCWGG	4 cut(s)	340, 456, 723, 925
PspGI	CCWGG	4 cut(s)	340, 456, 723, 925
PspPI	GGNCC	3 cut(s)	407, 639, 703
PspPPI	RGGWCCY	1 cut(s)	407
PsuI	RGATCY	2 cut(s)	290, 547
RsaI	GTAC	3 cut(s)	617, 758, 936
RsaNI	GTAC	3 cut(s)	616, 757, 935
RseI	CAYNNNNRTG	1 cut(s)	53
SaqAI	TTAA	3 cut(s)	531, 840, 957
SatI	GCNGC	3 cut(s)	63, 160, 378
Sau3AI	GATC	4 cut(s)	290, 547, 799, 919
Sau96I	GGNCC	3 cut(s)	407, 639, 703
ScaI	AGTACT	1 cut(s)	758
ScrFI	CCNGG	7 cut(s)	78, 101, 122, 342, 458, 725, 927
SduI	GDGCHC	2 cut(s)	60, 156
SfaNI	GCATC	2 cut(s)	473, 718
SfcI	CTRYAG	1 cut(s)	946
Sfr274I	CTCGAG	1 cut(s)	381
SinI	GGWCC	2 cut(s)	407, 703
SlaI	CTCGAG	1 cut(s)	381
SmiMI	CAYNNNNRTG	1 cut(s)	53
SmlI	CTYRAG	1 cut(s)	381
SmoI	CTYRAG	1 cut(s)	381
Sse9I	AATT	5 cut(s)	185, 280, 527, 793, 866
SseBI	AGGCCT	1 cut(s)	878
SsiI	CCGC	5 cut(s)	60, 63, 73, 157, 377
SspMI	CTAG	3 cut(s)	143, 453, 828
StuI	AGGCCT	1 cut(s)	878
StyD4I	CCNGG	7 cut(s)	76, 99, 120, 340, 456, 723, 925
StyI	CCWWGG	3 cut(s)	315, 324, 583
TaaI	ACNGT	1 cut(s)	947
TaiI	ACGT	2 cut(s)	129, 702
TaqI	TCGA	1 cut(s)	382
TasI	AATT	5 cut(s)	185, 280, 527, 793, 866
TatI	WGTACW	2 cut(s)	615, 756
TauI	GCSGC	2 cut(s)	65, 380
TfiI	GAWTC	3 cut(s)	110, 985, 1000
Tru1I	TTAA	3 cut(s)	531, 840, 957
Tru9I	TTAA	3 cut(s)	531, 840, 957
TscAI	CASTG	1 cut(s)	637
TseFI	GTSAC	4 cut(s)	3, 567, 712, 905
TseI	GCWGC	1 cut(s)	159
Tsp45I	GTSAC	4 cut(s)	3, 567, 712, 905
TspDTI	ATGAA	3 cut(s)	146, 324, 1013
TspRI	CASTG	1 cut(s)	637
VpaK11BI	GGWCC	2 cut(s)	407, 703
XapI	RAATTY	4 cut(s)	280, 527, 793, 866
XceI	RCATGY	1 cut(s)	99
XcmI	CCANNNNNNNNNTGG	2 cut(s)	322, 629
XhoI	CTCGAG	1 cut(s)	381
XspI	CTAG	3 cut(s)	143, 453, 828
ZraI	GACGTC	1 cut(s)	127
ZrmI	AGTACT	1 cut(s)	758

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.