Prupe.6G192000_v2.0.a1

Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
Physical Location & Seq
Forward (+)
19936192 .. 19938912
2721 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G192000.1

Sequence Viewer

Length: 966 bp
ATGTCTCCCCTCTTTTCACTCTTCCTCCTCCACATAATAGTCAGCGCTGCCGGTGCACAACTCCGGCCTCATTACTACTCAGAATCGTGCCCGAAAGCCGAAGCTGTGGTCCGACATGTCATGAAGAAGGCTCTGATCCGAGAGCCCCGGAGCCTTGCTTCTGTCATGCGCTTCCAATTCCATGATTGCTTTGTTAATGGTTGTGATGCTTCATTGTTGCTTGATGACACACCAACAATGCTTGGGGAAAAACTCGCCCTTGCAAACATAAATTCACTGAGATCTTATGAGGTTGTTGATGAAGTCAAGGAAACCTTGGAGAAGGTCTGCCCTGGGATTGTCTCTTGTGCGGATATCATCATCATGGCCTCTAAAGATGCTGTTGCATTGACAGGAGGACCTGATTGGGAAGTGAAGTTAGGCAGATTGGATAGCTTAAGCGCTAGCCAAGAAGCCTCAGACAACGTTATGCCAAGTCCAAGAGCCAACGCAAGCTTCCTCGTTGACCTGTTTGGCAAATTCAATCTGTCTGTCAAAGACCTTGTTGCCCTTTCTGGTTCACATTCCATCGGCCAAGGTCGGTGCTTCTCCATCATGTTCAGGCTGTACAATCAATCCGGCACCGGCCGGCCAGACCCAGTCTTTGATCCAAAGTTTAGAGGAAAGCTAAACAAGCTCTGCCCTTTGAATGTGGATCAAAACGTGACCGGAGACCTTGACGCTACACCGGTAGTGTTCGATAACCAGTACTTCAAGGACTTGGTTGCAGGGAGAGGGTTTCTGAATTCAGATCAAACACTTTTCACATTTCCAGAGACTAGGGCATTTGTTCAACTGTTTAGCAGGGACCAACATGAGTTTTTCAAGGCCTTTGTTGAGGGGATGATAAAGATGGGTGACTTGCAGGTTGACCAGCAAGGTGAGGTGAGAAGAAATTGCAGGGTGGTTAACAGTCGTCTCCTGTAG

Protein Analysis

322

Amino Acids

35.61

Weight (kDa)

6.32

Isoelectric Point (pI)

34.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 895
AccB1I GGYRCC 1 cut(s) 620
AciI CCGC 1 cut(s) 350
AclI AACGTT 1 cut(s) 465
AclWI GGATC 3 cut(s) 130, 641, 702
AcoI YGGCCR 3 cut(s) 571, 625, 629
AcsI RAATTY 3 cut(s) 271, 518, 784
AfaI GTAC 2 cut(s) 608, 749
AfeI AGCGCT 2 cut(s) 46, 442
AflII CTTAAG 1 cut(s) 436
AflIII ACRYGT 1 cut(s) 115
AgeI ACCGGT 1 cut(s) 727
AgsI TTSAA 5 cut(s) 523, 688, 754, 833, 865
AjnI CCWGG 1 cut(s) 331
AjuI GAANNNNNNNTTGG 2 cut(s) 479, 511
AluBI AGCT 5 cut(s) 104, 435, 495, 667, 676
AluI AGCT 5 cut(s) 104, 435, 495, 667, 676
Alw21I GWGCWC 1 cut(s) 58
Alw26I GTCTC 5 cut(s) 9, 346, 705, 809, 962
Alw44I GTGCAC 1 cut(s) 54
AlwI GGATC 3 cut(s) 130, 641, 702
Aor51HI AGCGCT 2 cut(s) 46, 442
AoxI GGCC 6 cut(s) 65, 366, 571, 625, 629, 867
ApaLI GTGCAC 1 cut(s) 54
ApeKI GCWGC 1 cut(s) 47
ApoI RAATTY 3 cut(s) 271, 518, 784
ArsI GACNNNNNNTTYG 4 cut(s) 93, 125, 626, 658
AsiGI ACCGGT 1 cut(s) 727
AspLEI GCGC 3 cut(s) 47, 171, 443
AspS9I GGNCC 3 cut(s) 109, 398, 847
AsuC2I CCSGG 1 cut(s) 148
AsuHPI GGTGA 3 cut(s) 908, 932, 937
AsuNHI GCTAGC 1 cut(s) 443
AvaII GGWCC 3 cut(s) 109, 398, 847
BaeGI GKGCMC 2 cut(s) 58, 92
BanI GGYRCC 1 cut(s) 620
BanII GRGCYC 1 cut(s) 147
Bbv12I GWGCWC 1 cut(s) 58
BbvI GCAGC 1 cut(s) 34
BccI CCATC 3 cut(s) 575, 599, 886
BciT130I CCWGG 1 cut(s) 333
BcnI CCSGG 1 cut(s) 148
BcoDI GTCTC 5 cut(s) 9, 346, 705, 809, 962
BfaI CTAG 2 cut(s) 444, 819
BfmI CTRYAG 1 cut(s) 962
BfoI RGCGCY 2 cut(s) 48, 444
BfrI CTTAAG 1 cut(s) 436
BfuAI ACCTGC 1 cut(s) 895
BglII AGATCT 1 cut(s) 281
BisI GCNGC 1 cut(s) 48
BlsI GCNGC 1 cut(s) 49
BmcAI AGTACT 1 cut(s) 749
Bme1390I CCNGG 2 cut(s) 148, 333
Bme18I GGWCC 3 cut(s) 109, 398, 847
BmgT120I GGNCC 3 cut(s) 109, 398, 847
BmiI GGNNCC 3 cut(s) 152, 622, 848
BmrFI CCNGG 2 cut(s) 148, 333
BmrI ACTGGG 1 cut(s) 632
BmsI GCATC 2 cut(s) 196, 367
BmtI GCTAGC 1 cut(s) 447
BmuI ACTGGG 1 cut(s) 632
BpuMI CCSGG 1 cut(s) 148
BsaI GGTCTC 1 cut(s) 705
BsaJI CCNNGG 5 cut(s) 146, 315, 331, 332, 574
BsaWI WCCGGW 2 cut(s) 707, 727
BsaXI ACNNNNNCTCC 2 cut(s) 9, 39
Bse118I RCCGGY 4 cut(s) 50, 623, 627, 727
Bse1I ACTGG 2 cut(s) 638, 745
BseBI CCWGG 1 cut(s) 333
BseDI CCNNGG 5 cut(s) 146, 315, 331, 332, 574
BseGI GGATG 1 cut(s) 888
BseMII CTCAG 3 cut(s) 93, 269, 471
BseNI ACTGG 2 cut(s) 638, 745
BseRI GAGGAG 1 cut(s) 17
BseSI GKGCMC 2 cut(s) 58, 92
BseX3I CGGCCG 1 cut(s) 625
BseXI GCAGC 1 cut(s) 34
Bsh1285I CGRYCG 1 cut(s) 628
BshFI GGCC 6 cut(s) 67, 368, 573, 627, 631, 869
BshNI GGYRCC 1 cut(s) 620
BshTI ACCGGT 1 cut(s) 727
BsiEI CGRYCG 1 cut(s) 628
BsiHKAI GWGCWC 1 cut(s) 58
BsiSI CCGG 8 cut(s) 51, 64, 148, 618, 624, 628, 708, 728
BslFI GGGAC 1 cut(s) 860
BsmAI GTCTC 5 cut(s) 9, 346, 705, 809, 962
BsmBI CGTCTC 1 cut(s) 962
BsmFI GGGAC 1 cut(s) 860
BsnI GGCC 6 cut(s) 67, 368, 573, 627, 631, 869
Bso31I GGTCTC 1 cut(s) 705
Bsp1286I GDGCHC 3 cut(s) 58, 92, 147
Bsp1407I TGTACA 1 cut(s) 606
Bsp143I GATC 5 cut(s) 135, 281, 646, 694, 790
BspACI CCGC 1 cut(s) 350
BspANI GGCC 6 cut(s) 67, 368, 573, 627, 631, 869
BspCNI CTCAG 3 cut(s) 92, 270, 470
BspHI TCATGA 1 cut(s) 120
BspLI GGNNCC 3 cut(s) 152, 622, 848
BspMI ACCTGC 1 cut(s) 895
BspOI GCTAGC 1 cut(s) 447
BspPI GGATC 3 cut(s) 130, 641, 702
BspT107I GGYRCC 1 cut(s) 620
BspTI CTTAAG 1 cut(s) 436
BspTNI GGTCTC 1 cut(s) 705
BsrFI RCCGGY 4 cut(s) 50, 623, 627, 727
BsrGI TGTACA 1 cut(s) 606
BsrI ACTGG 2 cut(s) 638, 745
BssAI RCCGGY 4 cut(s) 50, 623, 627, 727
BssECI CCNNGG 5 cut(s) 146, 315, 331, 332, 574
BssMI GATC 5 cut(s) 135, 281, 646, 694, 790
BssT1I CCWWGG 2 cut(s) 315, 574
Bst2UI CCWGG 1 cut(s) 333
Bst4CI ACNGT 2 cut(s) 837, 953
Bst6I CTCTTC 1 cut(s) 26
BstAFI CTTAAG 1 cut(s) 436
BstAUI TGTACA 1 cut(s) 606
BstC8I GCNNGC 3 cut(s) 445, 493, 629
BstDEI CTNAG 3 cut(s) 79, 278, 457
BstF5I GGATG 1 cut(s) 888
BstH2I RGCGCY 2 cut(s) 48, 444
BstHHI GCGC 3 cut(s) 47, 171, 443
BstKTI GATC 5 cut(s) 138, 284, 649, 697, 793
BstMAI GTCTC 5 cut(s) 9, 346, 705, 809, 962
BstMBI GATC 5 cut(s) 135, 281, 646, 694, 790
BstMCI CGRYCG 1 cut(s) 628
BstMWI GCNNNNNNNGC 2 cut(s) 53, 673
BstNI CCWGG 1 cut(s) 333
BstNSI RCATGY 1 cut(s) 119
BstSCI CCNGG 2 cut(s) 146, 331
BstSFI CTRYAG 1 cut(s) 962
BstSLI GKGCMC 2 cut(s) 58, 92
BstV1I GCAGC 1 cut(s) 34
BstX2I RGATCY 1 cut(s) 281
BstYI RGATCY 1 cut(s) 281
BstZI CGGCCG 1 cut(s) 625
BsuRI GGCC 6 cut(s) 67, 368, 573, 627, 631, 869
BtsCI GGATG 1 cut(s) 888
BtsIMutI CAGTG 1 cut(s) 275
BveI ACCTGC 1 cut(s) 895
Cac8I GCNNGC 3 cut(s) 445, 493, 629
CciI TCATGA 1 cut(s) 120
CfoI GCGC 3 cut(s) 47, 171, 443
Cfr10I RCCGGY 4 cut(s) 50, 623, 627, 727
Cfr13I GGNCC 3 cut(s) 109, 398, 847
CseI GACGC 1 cut(s) 728
Csp6I GTAC 2 cut(s) 607, 748
CspAI ACCGGT 1 cut(s) 727
CviAII CATG 7 cut(s) 116, 121, 166, 182, 364, 595, 854
CviQI GTAC 2 cut(s) 607, 748
DdeI CTNAG 3 cut(s) 79, 278, 457
DpnI GATC 5 cut(s) 137, 283, 648, 696, 792
DpnII GATC 5 cut(s) 135, 281, 646, 694, 790
EaeI YGGCCR 3 cut(s) 571, 625, 629
EagI CGGCCG 1 cut(s) 625
Eam1104I CTCTTC 1 cut(s) 26
EarI CTCTTC 1 cut(s) 26
EclXI CGGCCG 1 cut(s) 625
Eco130I CCWWGG 2 cut(s) 315, 574
Eco147I AGGCCT 1 cut(s) 869
Eco24I GRGCYC 1 cut(s) 147
Eco31I GGTCTC 1 cut(s) 705
Eco32I GATATC 1 cut(s) 355
Eco47I GGWCC 3 cut(s) 109, 398, 847
Eco47III AGCGCT 2 cut(s) 46, 442
Eco52I CGGCCG 1 cut(s) 625
EcoO109I RGGNCCY 1 cut(s) 398
EcoRI GAATTC 1 cut(s) 784
EcoRII CCWGG 1 cut(s) 331
EcoRV GATATC 1 cut(s) 355
EcoT14I CCWWGG 2 cut(s) 315, 574
EcoT38I GRGCYC 1 cut(s) 147
ErhI CCWWGG 2 cut(s) 315, 574
Esp3I CGTCTC 1 cut(s) 962
FaeI CATG 7 cut(s) 119, 124, 169, 185, 367, 598, 857
FalI AAGNNNNNCTT 2 cut(s) 299, 331
FaqI GGGAC 1 cut(s) 860
FatI CATG 7 cut(s) 115, 120, 165, 181, 363, 594, 853
Fnu4HI GCNGC 1 cut(s) 48
FokI GGATG 1 cut(s) 895
FriOI GRGCYC 1 cut(s) 147
FseI GGCCGGCC 1 cut(s) 631
Fsp4HI GCNGC 1 cut(s) 48
FspBI CTAG 2 cut(s) 444, 819
GlaI GCGC 3 cut(s) 46, 170, 442
GluI GCNGC 1 cut(s) 48
HaeII RGCGCY 2 cut(s) 48, 444
HaeIII GGCC 6 cut(s) 67, 368, 573, 627, 631, 869
HapII CCGG 8 cut(s) 51, 64, 148, 618, 624, 628, 708, 728
HgaI GACGC 1 cut(s) 728
HhaI GCGC 3 cut(s) 47, 171, 443
Hin1II CATG 7 cut(s) 119, 124, 169, 185, 367, 598, 857
Hin6I GCGC 3 cut(s) 45, 169, 441
HinP1I GCGC 3 cut(s) 45, 169, 441
HincII GTYRAC 3 cut(s) 505, 910, 949
HindII GTYRAC 3 cut(s) 505, 910, 949
HindIII AAGCTT 1 cut(s) 493
HinfI GANTC 1 cut(s) 83
HpaI GTTAAC 1 cut(s) 949
HpaII CCGG 8 cut(s) 51, 64, 148, 618, 624, 628, 708, 728
HphI GGTGA 3 cut(s) 908, 932, 937
Hpy166II GTNNAC 5 cut(s) 56, 505, 560, 910, 949
Hpy188I TCNGA 7 cut(s) 82, 113, 135, 140, 460, 783, 790
Hpy188III TCNNGA 2 cut(s) 121, 812
Hpy8I GTNNAC 5 cut(s) 56, 505, 560, 910, 949
HpyAV CCTTC 2 cut(s) 121, 316
HpyCH4III ACNGT 2 cut(s) 837, 953
HpyCH4IV ACGT 2 cut(s) 465, 702
HpyCH4V TGCA 6 cut(s) 56, 263, 386, 767, 904, 939
HpyF10VI GCNNNNNNNGC 2 cut(s) 53, 673
HpyF3I CTNAG 3 cut(s) 79, 278, 457
HpySE526I ACGT 2 cut(s) 465, 702
Hsp92II CATG 7 cut(s) 119, 124, 169, 185, 367, 598, 857
HspAI GCGC 3 cut(s) 45, 169, 441
KroI GCCGGC 1 cut(s) 627
KroNI GCCGGC 1 cut(s) 629
KspAI GTTAAC 1 cut(s) 949
Kzo9I GATC 5 cut(s) 135, 281, 646, 694, 790
LmnI GCTCC 1 cut(s) 150
Lsp1109I GCAGC 1 cut(s) 34
LweI GCATC 2 cut(s) 196, 367
MaeI CTAG 2 cut(s) 444, 819
MaeII ACGT 2 cut(s) 465, 702
MaeIII GTNAC 2 cut(s) 703, 896
MalI GATC 5 cut(s) 137, 283, 648, 696, 792
MboI GATC 5 cut(s) 135, 281, 646, 694, 790
MboII GAAGA 3 cut(s) 13, 136, 942
MflI RGATCY 1 cut(s) 281
MhlI GDGCHC 3 cut(s) 58, 92, 147
MluCI AATT 5 cut(s) 176, 271, 518, 784, 934
MmeI TCCRAC 1 cut(s) 136
MroNI GCCGGC 1 cut(s) 627
MseI TTAA 3 cut(s) 195, 437, 948
MslI CAYNNNNRTG 1 cut(s) 362
MspCI CTTAAG 1 cut(s) 436
MspI CCGG 8 cut(s) 51, 64, 148, 618, 624, 628, 708, 728
MspR9I CCNGG 2 cut(s) 148, 333
MvaI CCWGG 1 cut(s) 333
MwoI GCNNNNNNNGC 2 cut(s) 53, 673
NaeI GCCGGC 1 cut(s) 629
NciI CCSGG 1 cut(s) 148
NdeII GATC 5 cut(s) 135, 281, 646, 694, 790
NgoMIV GCCGGC 1 cut(s) 627
NheI GCTAGC 1 cut(s) 443
NlaIII CATG 7 cut(s) 119, 124, 169, 185, 367, 598, 857
NlaIV GGNNCC 3 cut(s) 152, 622, 848
NmuCI GTSAC 2 cut(s) 703, 896
NspI RCATGY 1 cut(s) 119
PagI TCATGA 1 cut(s) 120
PasI CCCWGGG 1 cut(s) 332
PceI AGGCCT 1 cut(s) 869
PciI ACATGT 1 cut(s) 115
PdiI GCCGGC 1 cut(s) 629
PfeI GAWTC 1 cut(s) 83
PflFI GACNNNGTC 1 cut(s) 638
PinAI ACCGGT 1 cut(s) 727
PkrI GCNGC 1 cut(s) 49
PpuMI RGGWCCY 1 cut(s) 398
PscI ACATGT 1 cut(s) 115
Psp1406I AACGTT 1 cut(s) 465
Psp5II RGGWCCY 1 cut(s) 398
Psp6I CCWGG 1 cut(s) 331
PspGI CCWGG 1 cut(s) 331
PspN4I GGNNCC 3 cut(s) 152, 622, 848
PspPI GGNCC 3 cut(s) 109, 398, 847
PspPPI RGGWCCY 1 cut(s) 398
PsuI RGATCY 1 cut(s) 281
PsyI GACNNNGTC 1 cut(s) 638
RigI GGCCGGCC 1 cut(s) 631
RsaI GTAC 2 cut(s) 608, 749
RsaNI GTAC 2 cut(s) 607, 748
RseI CAYNNNNRTG 1 cut(s) 362
SaqAI TTAA 3 cut(s) 195, 437, 948
SatI GCNGC 1 cut(s) 48
Sau3AI GATC 5 cut(s) 135, 281, 646, 694, 790
Sau96I GGNCC 3 cut(s) 109, 398, 847
ScaI AGTACT 1 cut(s) 749
ScrFI CCNGG 2 cut(s) 148, 333
SduI GDGCHC 3 cut(s) 58, 92, 147
SfaNI GCATC 2 cut(s) 196, 367
SfcI CTRYAG 1 cut(s) 962
SinI GGWCC 3 cut(s) 109, 398, 847
SmiMI CAYNNNNRTG 1 cut(s) 362
SmlI CTYRAG 1 cut(s) 436
SmoI CTYRAG 1 cut(s) 436
Sse9I AATT 5 cut(s) 176, 271, 518, 784, 934
SseBI AGGCCT 1 cut(s) 869
SsiI CCGC 1 cut(s) 350
SspMI CTAG 2 cut(s) 444, 819
StuI AGGCCT 1 cut(s) 869
StyD4I CCNGG 2 cut(s) 146, 331
StyI CCWWGG 2 cut(s) 315, 574
TaaI ACNGT 2 cut(s) 837, 953
TaiI ACGT 2 cut(s) 468, 705
TaqI TCGA 1 cut(s) 738
TasI AATT 5 cut(s) 176, 271, 518, 784, 934
TatI WGTACW 2 cut(s) 606, 747
TfiI GAWTC 1 cut(s) 83
Tru1I TTAA 3 cut(s) 195, 437, 948
Tru9I TTAA 3 cut(s) 195, 437, 948
TscAI CASTG 1 cut(s) 282
TseFI GTSAC 2 cut(s) 703, 896
TseI GCWGC 1 cut(s) 47
Tsp45I GTSAC 2 cut(s) 703, 896
TspDTI ATGAA 3 cut(s) 137, 201, 315
TspRI CASTG 1 cut(s) 282
Tth111I GACNNNGTC 1 cut(s) 638
Vha464I CTTAAG 1 cut(s) 436
VneI GTGCAC 1 cut(s) 54
VpaK11BI GGWCC 3 cut(s) 109, 398, 847
XapI RAATTY 3 cut(s) 271, 518, 784
XceI RCATGY 1 cut(s) 119
XspI CTAG 2 cut(s) 444, 819
ZrmI AGTACT 1 cut(s) 749
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.