Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0002664

Physical Location & Seq

Genomic Coordinates Forward (+)

11802786 .. 11804049

Gene Structure 1264 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1034900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 987 bp

ATGACTTCCCTCTTTTCTCTCTGCCTCCTTCAGTACATAATAATCGGGGCCGTTGCACAACTCCGGCCTCATTATTACTCTGAAACATGCCCGCAAGCTGAATCTGTGGTCCGAGATGTCATGAAAGAGGCTCTGATCAGAGAGGCCCGGAGCCTTGCCTCTGTCATGCGTTTCCAATTCCATGATTGCTTTGTCAATGGTTGTGATGCTTCTATGTTACTTGATGACACACCAACCATGCTTGGGGAAAAACTAGCCCTTGCAAACATAAACTCATTGAGATCTTATGAGGTTGTCGATGAAGCGAAAGAAGCCTTGGAGAAGGTCTGTCCGGGAGTCGTTTCTTGCGCGGACATCATAATCATAGCCTCTAGAGATGCTGTTGCTCTGTTAGGAAGATTGGATAGCTTATCAGCTAGCCAAGAAGCCTCAGACAACGTTATGCCAAGTCCAAGAGCCAATGCAACCTTCCTCATTGACCTGTTTGCCAAATTTAATCTTTCGGCCAAAGATCTCGTTGCACTTTCGGGGTCGCATTCCATTGGCCAAGCTCGGTGTTTTTCCATCATGTTTCGTTTGTACAATCAATCCGGCACTGGCCGGCCAGACCCTGCCATTGAACCAAAGTTTAGAGAAAAGCTAAACAAGCTTTGCCCGTTAAACGTGGACCAAAACATCACCGGAGACCTAGATGCTACACCTGTAGTGTTCGACAACCAGTACTTCAAGGACTTGGTTTCCGGGAGTGGGTTTCTCAATTCGGATCAAACGCTTTTCACATTTCCGGAAACGAAGGGATTTGTGCAGCAGTTTAGCAGTGATCAAGAAGAGTTTTTCAAGGCCTTTGTGGAGGGGATGATAAAGATGGGTGATTTGCAGGTTGAGCAGCCTGGGGAGGTGAGAAGAAATTGCAGGGTGGTTAATAGTCATCGTCCTGCCAGTGCCAACACATGCAAGAGCATTGAAGAAATGGTAACGTTTGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006725 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009505 GO:0009698 GO:0009699 GO:0009791 GO:0009808 GO:0009809 GO:0009987 GO:0010228 GO:0019438 GO:0019748 GO:0022414 GO:0030312 GO:0032501 GO:0032502 GO:0044237 GO:0044249 GO:0044424 GO:0044444 GO:0044464 GO:0044550 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0071944 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

peroxidase

Protein Analysis

329

Amino Acids

36.26

Weight (kDa)

5.01

Isoelectric Point (pI)

41.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
peroxidase	PF00141	37 - 273	6.5e-65	Peroxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002664)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22420
fragaria_vesca	FvH4_1g20350 FvH4_1g20360 FvH4_1g20360
malus_domestica	MD01G1034400.v1.1 MD01G1034500.v1.1 MD01G1034900.v1.1 MD15G1321200.v1.1 MD15G1321300.v1.1 MD15G1321400.v1.1
prunus_persica	Prupe.6G191800_v2.0.a1 Prupe.6G191900_v2.0.a1 Prupe.6G192000_v2.0.a1
pyrus_communis	pycom01g06150 pycom01g06160 pycom01g06190 pycom15g28200 pycom15g28210
rosa_chinensis	RchiOBHm_Chr2g0112481 RchiOBHm_Chr2g0112491
rosa_laevigata	RLG00000017984 RLG00000017985
rosa_multiflora	Rmu_co8298115.1_g000001 Rmu_co8310909.1_g000001 Rmu_sc0013522.1_g000001 Rmu_sc0026466.1_g000001
rosa_roxburghii	Rroxscaffold_2G00131380 Rroxscaffold_2G00131390
rosa_rugosa	Rorug02G0181300 Rorug02G0181300
rosa_samantha	Rh2AG234300 Rh2AG234400 Rh2BG247900 Rh2BG248000 Rh2CG238900 Rh2CG239000 Rh2DG241900 Rh2DG242000
rosa_wichuraiana	Rw2G018150 Rw2G018160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	868
AccII	CGCG	1 cut(s)	350
AccIII	TCCGGA	1 cut(s)	784
AciI	CCGC	2 cut(s)	92, 350
AclI	AACGTT	2 cut(s)	438, 977
AclWI	GGATC	1 cut(s)	771
AcoI	YGGCCR	4 cut(s)	504, 544, 598, 602
AcsI	RAATTY	1 cut(s)	491
AcuI	CTGAAG	1 cut(s)	14
AfaI	GTAC	3 cut(s)	35, 581, 722
AfiI	CCNNNNNNNGG	2 cut(s)	243, 747
AgsI	TTSAA	4 cut(s)	620, 727, 838, 965
AjnI	CCWGG	1 cut(s)	889
AjuI	GAANNNNNNNTTGG	4 cut(s)	299, 331, 452, 484
AluBI	AGCT	6 cut(s)	98, 408, 416, 551, 640, 649
AluI	AGCT	6 cut(s)	98, 408, 416, 551, 640, 649
Alw26I	GTCTC	1 cut(s)	678
AlwI	GGATC	1 cut(s)	771
AlwNI	CAGNNNCTG	1 cut(s)	611
Aor13HI	TCCGGA	1 cut(s)	784
AoxI	GGCC	8 cut(s)	48, 65, 144, 504, 544, 598, 602, 840
ApeKI	GCWGC	2 cut(s)	805, 886
ApoI	RAATTY	1 cut(s)	491
AspLEI	GCGC	1 cut(s)	350
AspS9I	GGNCC	4 cut(s)	48, 109, 145, 667
AsuC2I	CCSGG	3 cut(s)	148, 333, 742
AsuHPI	GGTGA	3 cut(s)	670, 881, 910
AsuNHI	GCTAGC	1 cut(s)	416
AvaII	GGWCC	2 cut(s)	109, 667
BalI	TGGCCA	1 cut(s)	546
BbvI	GCAGC	2 cut(s)	817, 898
BccI	CCATC	2 cut(s)	572, 859
BceAI	ACGGC	1 cut(s)	35
BciT130I	CCWGG	1 cut(s)	891
BclI	TGATCA	2 cut(s)	135, 820
BcnI	CCSGG	3 cut(s)	148, 333, 742
BcoDI	GTCTC	1 cut(s)	678
BfaI	CTAG	4 cut(s)	254, 372, 417, 689
BfmI	CTRYAG	1 cut(s)	702
BfuAI	ACCTGC	1 cut(s)	868
BglII	AGATCT	2 cut(s)	281, 511
BisI	GCNGC	2 cut(s)	806, 887
BlsI	GCNGC	2 cut(s)	807, 888
BmcAI	AGTACT	1 cut(s)	722
Bme1390I	CCNGG	4 cut(s)	148, 333, 742, 891
Bme18I	GGWCC	2 cut(s)	109, 667
BmgT120I	GGNCC	4 cut(s)	48, 109, 145, 667
BmiI	GGNNCC	2 cut(s)	49, 152
BmrFI	CCNGG	4 cut(s)	148, 333, 742, 891
BmsI	GCATC	3 cut(s)	196, 367, 682
BmtI	GCTAGC	1 cut(s)	420
BpuMI	CCSGG	3 cut(s)	148, 333, 742
BsaI	GGTCTC	1 cut(s)	678
BsaJI	CCNNGG	2 cut(s)	315, 890
BsaWI	WCCGGW	2 cut(s)	680, 784
Bsc4I	CCNNNNNNNGG	2 cut(s)	243, 747
Bse118I	RCCGGY	1 cut(s)	600
Bse1I	ACTGG	3 cut(s)	601, 718, 939
BseAI	TCCGGA	1 cut(s)	784
BseBI	CCWGG	1 cut(s)	891
BseDI	CCNNGG	2 cut(s)	315, 890
BseGI	GGATG	1 cut(s)	861
BseLI	CCNNNNNNNGG	2 cut(s)	243, 747
BseMII	CTCAG	1 cut(s)	444
BseNI	ACTGG	3 cut(s)	601, 718, 939
BseXI	GCAGC	2 cut(s)	817, 898
BsgI	GTGCAG	1 cut(s)	824
Bsh1236I	CGCG	1 cut(s)	350
BshFI	GGCC	8 cut(s)	50, 67, 146, 506, 546, 600, 604, 842
BsiSI	CCGG	8 cut(s)	64, 148, 332, 591, 601, 681, 741, 785
BslI	CCNNNNNNNGG	2 cut(s)	243, 747
BsmAI	GTCTC	1 cut(s)	678
BsmI	GAATGC	1 cut(s)	535
BsnI	GGCC	8 cut(s)	50, 67, 146, 506, 546, 600, 604, 842
Bso31I	GGTCTC	1 cut(s)	678
Bsp13I	TCCGGA	1 cut(s)	784
Bsp1407I	TGTACA	1 cut(s)	579
Bsp143I	GATC	5 cut(s)	135, 281, 511, 763, 820
BspACI	CCGC	2 cut(s)	92, 350
BspANI	GGCC	8 cut(s)	50, 67, 146, 506, 546, 600, 604, 842
BspCNI	CTCAG	1 cut(s)	443
BspEI	TCCGGA	1 cut(s)	784
BspFNI	CGCG	1 cut(s)	350
BspHI	TCATGA	1 cut(s)	120
BspLI	GGNNCC	2 cut(s)	49, 152
BspMI	ACCTGC	1 cut(s)	868
BspOI	GCTAGC	1 cut(s)	420
BspPI	GGATC	1 cut(s)	771
BspTNI	GGTCTC	1 cut(s)	678
BsrFI	RCCGGY	1 cut(s)	600
BsrGI	TGTACA	1 cut(s)	579
BsrI	ACTGG	3 cut(s)	601, 718, 939
BssAI	RCCGGY	1 cut(s)	600
BssECI	CCNNGG	2 cut(s)	315, 890
BssMI	GATC	5 cut(s)	135, 281, 511, 763, 820
BssT1I	CCWWGG	1 cut(s)	315
Bst2UI	CCWGG	1 cut(s)	891
Bst6I	CTCTTC	1 cut(s)	822
BstAUI	TGTACA	1 cut(s)	579
BstC8I	GCNNGC	4 cut(s)	92, 96, 418, 602
BstDEI	CTNAG	1 cut(s)	430
BstF5I	GGATG	1 cut(s)	861
BstFNI	CGCG	1 cut(s)	350
BstHHI	GCGC	1 cut(s)	350
BstKTI	GATC	5 cut(s)	138, 284, 514, 766, 823
BstMAI	GTCTC	1 cut(s)	678
BstMBI	GATC	5 cut(s)	135, 281, 511, 763, 820
BstMWI	GCNNNNNNNGC	3 cut(s)	311, 646, 883
BstNI	CCWGG	1 cut(s)	891
BstNSI	RCATGY	2 cut(s)	90, 954
BstSCI	CCNGG	4 cut(s)	146, 331, 740, 889
BstSFI	CTRYAG	1 cut(s)	702
BstUI	CGCG	1 cut(s)	350
BstV1I	GCAGC	2 cut(s)	817, 898
BstX2I	RGATCY	2 cut(s)	281, 511
BstYI	RGATCY	2 cut(s)	281, 511
BsuRI	GGCC	8 cut(s)	50, 67, 146, 506, 546, 600, 604, 842
BtsCI	GGATG	1 cut(s)	861
BtsI	GCAGTG	1 cut(s)	823
BtsIMutI	CAGTG	3 cut(s)	594, 823, 946
BveI	ACCTGC	1 cut(s)	868
Cac8I	GCNNGC	4 cut(s)	92, 96, 418, 602
CaiI	CAGNNNCTG	1 cut(s)	611
CciI	TCATGA	1 cut(s)	120
CfoI	GCGC	1 cut(s)	350
Cfr10I	RCCGGY	1 cut(s)	600
Cfr13I	GGNCC	4 cut(s)	48, 109, 145, 667
Csp6I	GTAC	3 cut(s)	34, 580, 721
CviAII	CATG	7 cut(s)	87, 121, 166, 182, 238, 568, 951
CviQI	GTAC	3 cut(s)	34, 580, 721
DdeI	CTNAG	1 cut(s)	430
DpnI	GATC	5 cut(s)	137, 283, 513, 765, 822
DpnII	GATC	5 cut(s)	135, 281, 511, 763, 820
EaeI	YGGCCR	4 cut(s)	504, 544, 598, 602
Eam1104I	CTCTTC	1 cut(s)	822
EarI	CTCTTC	1 cut(s)	822
Eco130I	CCWWGG	1 cut(s)	315
Eco147I	AGGCCT	1 cut(s)	842
Eco31I	GGTCTC	1 cut(s)	678
Eco47I	GGWCC	2 cut(s)	109, 667
Eco57I	CTGAAG	1 cut(s)	14
EcoRII	CCWGG	1 cut(s)	889
EcoT14I	CCWWGG	1 cut(s)	315
ErhI	CCWWGG	1 cut(s)	315
FaeI	CATG	7 cut(s)	90, 124, 169, 185, 241, 571, 954
FatI	CATG	7 cut(s)	86, 120, 165, 181, 237, 567, 950
FauI	CCCGC	1 cut(s)	99
FbaI	TGATCA	2 cut(s)	135, 820
Fnu4HI	GCNGC	2 cut(s)	806, 887
FokI	GGATG	1 cut(s)	868
FseI	GGCCGGCC	1 cut(s)	604
Fsp4HI	GCNGC	2 cut(s)	806, 887
FspBI	CTAG	4 cut(s)	254, 372, 417, 689
GlaI	GCGC	1 cut(s)	349
GluI	GCNGC	2 cut(s)	806, 887
HaeIII	GGCC	8 cut(s)	50, 67, 146, 506, 546, 600, 604, 842
HapII	CCGG	8 cut(s)	64, 148, 332, 591, 601, 681, 741, 785
HhaI	GCGC	1 cut(s)	350
Hin1II	CATG	7 cut(s)	90, 124, 169, 185, 241, 571, 954
Hin6I	GCGC	1 cut(s)	348
HinP1I	GCGC	1 cut(s)	348
HindIII	AAGCTT	1 cut(s)	647
HinfI	GANTC	2 cut(s)	101, 336
HpaII	CCGG	8 cut(s)	64, 148, 332, 591, 601, 681, 741, 785
HphI	GGTGA	3 cut(s)	670, 881, 910
Hpy166II	GTNNAC	1 cut(s)	667
Hpy188I	TCNGA	6 cut(s)	82, 113, 135, 140, 433, 763
Hpy188III	TCNNGA	4 cut(s)	121, 372, 785, 824
Hpy8I	GTNNAC	1 cut(s)	667
HpyAV	CCTTC	4 cut(s)	38, 316, 478, 787
HpyCH4IV	ACGT	3 cut(s)	438, 663, 977
HpyCH4V	TGCA	8 cut(s)	56, 263, 464, 521, 805, 877, 912, 954
HpyF10VI	GCNNNNNNNGC	3 cut(s)	311, 646, 883
HpyF3I	CTNAG	1 cut(s)	430
HpySE526I	ACGT	3 cut(s)	438, 663, 977
Hsp92II	CATG	7 cut(s)	90, 124, 169, 185, 241, 571, 954
HspAI	GCGC	1 cut(s)	348
Kpn2I	TCCGGA	1 cut(s)	784
KroI	GCCGGC	1 cut(s)	600
KroNI	GCCGGC	1 cut(s)	602
Ksp22I	TGATCA	2 cut(s)	135, 820
Kzo9I	GATC	5 cut(s)	135, 281, 511, 763, 820
LmnI	GCTCC	1 cut(s)	150
Lsp1109I	GCAGC	2 cut(s)	817, 898
LweI	GCATC	3 cut(s)	196, 367, 682
MaeI	CTAG	4 cut(s)	254, 372, 417, 689
MaeII	ACGT	3 cut(s)	438, 663, 977
MaeIII	GTNAC	2 cut(s)	216, 973
MalI	GATC	5 cut(s)	137, 283, 513, 765, 822
MboI	GATC	5 cut(s)	135, 281, 511, 763, 820
MboII	GAAGA	4 cut(s)	408, 839, 915, 977
MflI	RGATCY	2 cut(s)	281, 511
MlsI	TGGCCA	1 cut(s)	546
MluCI	AATT	4 cut(s)	176, 491, 757, 907
MluNI	TGGCCA	1 cut(s)	546
MlyI	GAGTC	1 cut(s)	345
Mox20I	TGGCCA	1 cut(s)	546
MroI	TCCGGA	1 cut(s)	784
MroNI	GCCGGC	1 cut(s)	600
MscI	TGGCCA	1 cut(s)	546
MseI	TTAA	3 cut(s)	495, 659, 921
Msp20I	TGGCCA	1 cut(s)	546
MspI	CCGG	8 cut(s)	64, 148, 332, 591, 601, 681, 741, 785
MspR9I	CCNGG	4 cut(s)	148, 333, 742, 891
Mva1269I	GAATGC	1 cut(s)	535
MvaI	CCWGG	1 cut(s)	891
MvnI	CGCG	1 cut(s)	350
MwoI	GCNNNNNNNGC	3 cut(s)	311, 646, 883
NaeI	GCCGGC	1 cut(s)	602
NciI	CCSGG	3 cut(s)	148, 333, 742
NdeII	GATC	5 cut(s)	135, 281, 511, 763, 820
NgoMIV	GCCGGC	1 cut(s)	600
NheI	GCTAGC	1 cut(s)	416
NlaIII	CATG	7 cut(s)	90, 124, 169, 185, 241, 571, 954
NlaIV	GGNNCC	2 cut(s)	49, 152
NspI	RCATGY	2 cut(s)	90, 954
PagI	TCATGA	1 cut(s)	120
PceI	AGGCCT	1 cut(s)	842
PctI	GAATGC	1 cut(s)	535
PdiI	GCCGGC	1 cut(s)	602
PfeI	GAWTC	1 cut(s)	101
PfoI	TCCNGGA	2 cut(s)	331, 740
PkrI	GCNGC	2 cut(s)	807, 888
PleI	GAGTC	1 cut(s)	344
PpsI	GAGTC	1 cut(s)	344
Psp1406I	AACGTT	2 cut(s)	438, 977
Psp6I	CCWGG	1 cut(s)	889
PspGI	CCWGG	1 cut(s)	889
PspN4I	GGNNCC	2 cut(s)	49, 152
PspPI	GGNCC	4 cut(s)	48, 109, 145, 667
PstNI	CAGNNNCTG	1 cut(s)	611
PsuI	RGATCY	2 cut(s)	281, 511
RigI	GGCCGGCC	1 cut(s)	604
RsaI	GTAC	3 cut(s)	35, 581, 722
RsaNI	GTAC	3 cut(s)	34, 580, 721
SaqAI	TTAA	3 cut(s)	495, 659, 921
SatI	GCNGC	2 cut(s)	806, 887
Sau3AI	GATC	5 cut(s)	135, 281, 511, 763, 820
Sau96I	GGNCC	4 cut(s)	48, 109, 145, 667
ScaI	AGTACT	1 cut(s)	722
SchI	GAGTC	1 cut(s)	345
ScrFI	CCNGG	4 cut(s)	148, 333, 742, 891
SfaNI	GCATC	3 cut(s)	196, 367, 682
SfcI	CTRYAG	1 cut(s)	702
SinI	GGWCC	2 cut(s)	109, 667
Sse9I	AATT	4 cut(s)	176, 491, 757, 907
SseBI	AGGCCT	1 cut(s)	842
SsiI	CCGC	2 cut(s)	92, 350
SspMI	CTAG	4 cut(s)	254, 372, 417, 689
StuI	AGGCCT	1 cut(s)	842
StyD4I	CCNGG	4 cut(s)	146, 331, 740, 889
StyI	CCWWGG	1 cut(s)	315
TaiI	ACGT	3 cut(s)	441, 666, 980
TaqI	TCGA	2 cut(s)	297, 711
TasI	AATT	4 cut(s)	176, 491, 757, 907
TatI	WGTACW	3 cut(s)	33, 579, 720
TfiI	GAWTC	1 cut(s)	101
Tru1I	TTAA	3 cut(s)	495, 659, 921
Tru9I	TTAA	3 cut(s)	495, 659, 921
TscAI	CASTG	3 cut(s)	601, 823, 946
TseI	GCWGC	2 cut(s)	805, 886
TspDTI	ATGAA	2 cut(s)	137, 315
TspRI	CASTG	3 cut(s)	601, 823, 946
VpaK11BI	GGWCC	2 cut(s)	109, 667
XapI	RAATTY	1 cut(s)	491
XbaI	TCTAGA	1 cut(s)	371
XceI	RCATGY	2 cut(s)	90, 954
XspI	CTAG	4 cut(s)	254, 372, 417, 689
ZrmI	AGTACT	1 cut(s)	722

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.