Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0002664

Physical Location & Seq

Genomic Coordinates Reverse (-)

25247130 .. 25249395

Gene Structure 2266 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG248000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 981 bp

ATGTCTCCCCTCCTCTTTCCTCTCCTCCTCCTTCTTGTCCACATAATAACCGGGGCGGCCGTGCAGCTCTGCCCCGATTATTACTCCGAGACGTGCCCGGAAGCTGAAACCATAGTCCGGGGTGTCATGAAGAAGGCTTATGATAGAGAGCCCCGGAGCCTTGCCTCGGTCATGCGCTTCCAATTCCATGATTGCTTTGTTAATGGTTGTGATGCTTCCATGTTACTTGATGACACTCCAACCATGCTTGGGGAAAAACTCTCCCTTTCAAACATAAATTCACTGAGATCTTATGAGGTTGTTGATGAAGTCAAGGAAGCCTTGGAGAAAGCCTGTCCTGGTGTTGTTTCTTGTGCTGACATCATAATCATGGCTTCTAGAGATGCTGTTGCTCTGACTGGAGGACCAGATTGGCAAGTAAAGGTAGGGAGATTGGACAGCTTAACAGCTAGCCAAGAAGCCTCGGACAACATTATGCCGAGTCCAAGAGCCGATGCAACCTCCCTCATTGACCTCTTTGCCAAATTCAATCTTTCTGTCAAAGACCTTGTTGCACTTTCAGGGTCACACTCCATTGGACAGGGGCGGTGCTTTTCCATCATGTTTCGGCTGTACAACCAATCCGGCACTGGCAGGCCAGACCCTGCCATTGAACCAAAGTTTAGAGAAAAGCTAAAGAAACTATGCCCTTTGAATGTGGACCAAAATGTGACTGGAGACCTTGATGCTACACCTATAATATTTGATAACCAGTACTTCAAGGACTTGGCTTCCGGGAGAGGGTTTCTAAATTCGGATCAAACACTTTTCACATTTCCGCAGACAAGAGGGTTTGTTAAGCTGTTCAGCAGTGATCAAGGAGAATTTTTCAAGGCTTTTATTGAGGGGATGATAAAGATGGGTGACTTGCAGATTGAGCAACCTGGGGAGATAAGGAAAAATTGCAGGGTGGCTAATCGTCGCCCTATCAACACATTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006725 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009505 GO:0009698 GO:0009699 GO:0009791 GO:0009808 GO:0009809 GO:0009987 GO:0010228 GO:0019438 GO:0019748 GO:0022414 GO:0030312 GO:0032501 GO:0032502 GO:0044237 GO:0044249 GO:0044424 GO:0044444 GO:0044464 GO:0044550 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0071944 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

peroxidase

Protein Analysis

326

Amino Acids

36.09

Weight (kDa)

5.4

Isoelectric Point (pI)

38.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
peroxidase	PF00141	39 - 284	1.7e-75	Peroxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002664)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22420
fragaria_vesca	FvH4_1g20350 FvH4_1g20360 FvH4_1g20360
malus_domestica	MD01G1034400.v1.1 MD01G1034500.v1.1 MD01G1034900.v1.1 MD15G1321200.v1.1 MD15G1321300.v1.1 MD15G1321400.v1.1
prunus_persica	Prupe.6G191800_v2.0.a1 Prupe.6G191900_v2.0.a1 Prupe.6G192000_v2.0.a1
pyrus_communis	pycom01g06150 pycom01g06160 pycom01g06190 pycom15g28200 pycom15g28210
rosa_chinensis	RchiOBHm_Chr2g0112481 RchiOBHm_Chr2g0112491
rosa_laevigata	RLG00000017984 RLG00000017985
rosa_multiflora	Rmu_co8298115.1_g000001 Rmu_co8310909.1_g000001 Rmu_sc0013522.1_g000001 Rmu_sc0026466.1_g000001
rosa_roxburghii	Rroxscaffold_2G00131380 Rroxscaffold_2G00131390
rosa_rugosa	Rorug02G0181300 Rorug02G0181300
rosa_samantha	Rh2AG234300 Rh2AG234400 Rh2BG247900 Rh2BG248000 Rh2CG238900 Rh2CG239000 Rh2DG241900 Rh2DG242000
rosa_wichuraiana	Rw2G018150 Rw2G018160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	56, 586, 818
AclWI	GGATC	1 cut(s)	804
AcoI	YGGCCR	1 cut(s)	57
AcsI	RAATTY	4 cut(s)	277, 524, 790, 863
AfaI	GTAC	2 cut(s)	614, 755
AfiI	CCNNNNNNNGG	4 cut(s)	117, 166, 249, 780
AgsI	TTSAA	6 cut(s)	270, 529, 653, 694, 760, 871
AjiI	CACGTC	1 cut(s)	93
AjnI	CCWGG	2 cut(s)	337, 922
AluBI	AGCT	6 cut(s)	67, 104, 441, 449, 673, 841
AluI	AGCT	6 cut(s)	67, 104, 441, 449, 673, 841
Alw26I	GTCTC	3 cut(s)	9, 83, 711
AlwI	GGATC	1 cut(s)	804
AlwNI	CAGNNNCTG	1 cut(s)	644
AoxI	GGCC	2 cut(s)	57, 635
ApeKI	GCWGC	1 cut(s)	64
ApoI	RAATTY	4 cut(s)	277, 524, 790, 863
AspLEI	GCGC	1 cut(s)	177
AspS9I	GGNCC	2 cut(s)	404, 700
AsuC2I	CCSGG	5 cut(s)	52, 98, 119, 154, 775
AsuHPI	GGTGA	1 cut(s)	914
AsuNHI	GCTAGC	1 cut(s)	449
AvaII	GGWCC	2 cut(s)	404, 700
BaeGI	GKGCMC	1 cut(s)	98
BanII	GRGCYC	1 cut(s)	153
BbvI	GCAGC	1 cut(s)	76
BccI	CCATC	2 cut(s)	605, 892
BceAI	ACGGC	1 cut(s)	44
BciT130I	CCWGG	2 cut(s)	339, 924
BclI	TGATCA	1 cut(s)	853
BcnI	CCSGG	5 cut(s)	52, 98, 119, 154, 775
BcoDI	GTCTC	3 cut(s)	9, 83, 711
BfaI	CTAG	2 cut(s)	378, 450
BglII	AGATCT	1 cut(s)	287
BisI	GCNGC	2 cut(s)	57, 65
BlsI	GCNGC	2 cut(s)	58, 66
BmcAI	AGTACT	1 cut(s)	755
Bme1390I	CCNGG	7 cut(s)	52, 98, 119, 154, 339, 775, 924
Bme18I	GGWCC	2 cut(s)	404, 700
BmgBI	CACGTC	1 cut(s)	93
BmgT120I	GGNCC	2 cut(s)	404, 700
BmiI	GGNNCC	1 cut(s)	158
BmrFI	CCNGG	7 cut(s)	52, 98, 119, 154, 339, 775, 924
BmsI	GCATC	4 cut(s)	202, 373, 484, 715
BmtI	GCTAGC	1 cut(s)	453
BpmI	CTGGAG	2 cut(s)	420, 735
BpuMI	CCSGG	5 cut(s)	52, 98, 119, 154, 775
BsaI	GGTCTC	1 cut(s)	711
BsaJI	CCNNGG	7 cut(s)	51, 118, 152, 165, 321, 462, 923
Bsc4I	CCNNNNNNNGG	4 cut(s)	117, 166, 249, 780
Bse1I	ACTGG	4 cut(s)	403, 634, 718, 751
BseBI	CCWGG	2 cut(s)	339, 924
BseDI	CCNNGG	7 cut(s)	51, 118, 152, 165, 321, 462, 923
BseGI	GGATG	1 cut(s)	894
BseLI	CCNNNNNNNGG	4 cut(s)	117, 166, 249, 780
BseMII	CTCAG	1 cut(s)	275
BseNI	ACTGG	4 cut(s)	403, 634, 718, 751
BseRI	GAGGAG	2 cut(s)	14, 17
BseSI	GKGCMC	1 cut(s)	98
BseX3I	CGGCCG	1 cut(s)	57
BseXI	GCAGC	1 cut(s)	76
BsgI	GTGCAG	1 cut(s)	83
Bsh1285I	CGRYCG	1 cut(s)	60
BshFI	GGCC	2 cut(s)	59, 637
BsiEI	CGRYCG	1 cut(s)	60
BsiSI	CCGG	6 cut(s)	51, 98, 118, 154, 624, 774
BslI	CCNNNNNNNGG	4 cut(s)	117, 166, 249, 780
BsmAI	GTCTC	3 cut(s)	9, 83, 711
BsmBI	CGTCTC	1 cut(s)	83
BsnI	GGCC	2 cut(s)	59, 637
Bso31I	GGTCTC	1 cut(s)	711
Bsp1286I	GDGCHC	2 cut(s)	98, 153
Bsp1407I	TGTACA	1 cut(s)	612
Bsp143I	GATC	3 cut(s)	287, 796, 853
BspACI	CCGC	3 cut(s)	56, 586, 818
BspANI	GGCC	2 cut(s)	59, 637
BspCNI	CTCAG	1 cut(s)	276
BspHI	TCATGA	1 cut(s)	126
BspLI	GGNNCC	1 cut(s)	158
BspOI	GCTAGC	1 cut(s)	453
BspPI	GGATC	1 cut(s)	804
BspTNI	GGTCTC	1 cut(s)	711
BsrGI	TGTACA	1 cut(s)	612
BsrI	ACTGG	4 cut(s)	403, 634, 718, 751
BssECI	CCNNGG	7 cut(s)	51, 118, 152, 165, 321, 462, 923
BssMI	GATC	3 cut(s)	287, 796, 853
BssT1I	CCWWGG	1 cut(s)	321
Bst2UI	CCWGG	2 cut(s)	339, 924
BstAUI	TGTACA	1 cut(s)	612
BstC8I	GCNNGC	2 cut(s)	451, 635
BstDEI	CTNAG	1 cut(s)	284
BstF5I	GGATG	1 cut(s)	894
BstHHI	GCGC	1 cut(s)	177
BstKTI	GATC	3 cut(s)	290, 799, 856
BstMAI	GTCTC	3 cut(s)	9, 83, 711
BstMBI	GATC	3 cut(s)	287, 796, 853
BstMCI	CGRYCG	1 cut(s)	60
BstMWI	GCNNNNNNNGC	1 cut(s)	916
BstNI	CCWGG	2 cut(s)	339, 924
BstSCI	CCNGG	7 cut(s)	50, 96, 117, 152, 337, 773, 922
BstSLI	GKGCMC	1 cut(s)	98
BstV1I	GCAGC	1 cut(s)	76
BstX2I	RGATCY	1 cut(s)	287
BstYI	RGATCY	1 cut(s)	287
BstZI	CGGCCG	1 cut(s)	57
BsuRI	GGCC	2 cut(s)	59, 637
BtrI	CACGTC	1 cut(s)	93
BtsCI	GGATG	1 cut(s)	894
BtsI	GCAGTG	1 cut(s)	856
BtsIMutI	CAGTG	3 cut(s)	281, 627, 856
Cac8I	GCNNGC	2 cut(s)	451, 635
CaiI	CAGNNNCTG	1 cut(s)	644
CciI	TCATGA	1 cut(s)	126
CfoI	GCGC	1 cut(s)	177
Cfr13I	GGNCC	2 cut(s)	404, 700
Csp6I	GTAC	2 cut(s)	613, 754
CviAII	CATG	7 cut(s)	127, 172, 188, 220, 244, 370, 601
CviQI	GTAC	2 cut(s)	613, 754
DdeI	CTNAG	1 cut(s)	284
DpnI	GATC	3 cut(s)	289, 798, 855
DpnII	GATC	3 cut(s)	287, 796, 853
EaeI	YGGCCR	1 cut(s)	57
EagI	CGGCCG	1 cut(s)	57
EclXI	CGGCCG	1 cut(s)	57
Eco130I	CCWWGG	1 cut(s)	321
Eco24I	GRGCYC	1 cut(s)	153
Eco31I	GGTCTC	1 cut(s)	711
Eco47I	GGWCC	2 cut(s)	404, 700
Eco52I	CGGCCG	1 cut(s)	57
EcoRII	CCWGG	2 cut(s)	337, 922
EcoT14I	CCWWGG	1 cut(s)	321
EcoT38I	GRGCYC	1 cut(s)	153
ErhI	CCWWGG	1 cut(s)	321
Esp3I	CGTCTC	1 cut(s)	83
FaeI	CATG	7 cut(s)	130, 175, 191, 223, 247, 373, 604
FalI	AAGNNNNNCTT	2 cut(s)	305, 337
FatI	CATG	7 cut(s)	126, 171, 187, 219, 243, 369, 600
FbaI	TGATCA	1 cut(s)	853
Fnu4HI	GCNGC	2 cut(s)	57, 65
FokI	GGATG	1 cut(s)	901
FriOI	GRGCYC	1 cut(s)	153
Fsp4HI	GCNGC	2 cut(s)	57, 65
FspBI	CTAG	2 cut(s)	378, 450
GlaI	GCGC	1 cut(s)	176
GluI	GCNGC	2 cut(s)	57, 65
GsuI	CTGGAG	2 cut(s)	420, 735
HaeIII	GGCC	2 cut(s)	59, 637
HapII	CCGG	6 cut(s)	51, 98, 118, 154, 624, 774
HhaI	GCGC	1 cut(s)	177
Hin1II	CATG	7 cut(s)	130, 175, 191, 223, 247, 373, 604
Hin6I	GCGC	1 cut(s)	175
HinP1I	GCGC	1 cut(s)	175
HinfI	GANTC	1 cut(s)	481
HpaII	CCGG	6 cut(s)	51, 98, 118, 154, 624, 774
HphI	GGTGA	1 cut(s)	914
Hpy166II	GTNNAC	2 cut(s)	40, 700
Hpy188I	TCNGA	5 cut(s)	88, 396, 466, 796, 980
Hpy188III	TCNNGA	2 cut(s)	127, 378
Hpy8I	GTNNAC	2 cut(s)	40, 700
Hpy99I	CGWCG	1 cut(s)	963
HpyAV	CCTTC	2 cut(s)	41, 127
HpyCH4IV	ACGT	1 cut(s)	92
HpyCH4V	TGCA	5 cut(s)	64, 497, 554, 910, 945
HpyF10VI	GCNNNNNNNGC	1 cut(s)	916
HpyF3I	CTNAG	1 cut(s)	284
HpySE526I	ACGT	1 cut(s)	92
Hsp92II	CATG	7 cut(s)	130, 175, 191, 223, 247, 373, 604
HspAI	GCGC	1 cut(s)	175
Ksp22I	TGATCA	1 cut(s)	853
Kzo9I	GATC	3 cut(s)	287, 796, 853
LmnI	GCTCC	1 cut(s)	156
Lsp1109I	GCAGC	1 cut(s)	76
LweI	GCATC	4 cut(s)	202, 373, 484, 715
MaeI	CTAG	2 cut(s)	378, 450
MaeII	ACGT	1 cut(s)	92
MaeIII	GTNAC	4 cut(s)	222, 564, 709, 902
MalI	GATC	3 cut(s)	289, 798, 855
MboI	GATC	3 cut(s)	287, 796, 853
MboII	GAAGA	1 cut(s)	142
MflI	RGATCY	1 cut(s)	287
MhlI	GDGCHC	2 cut(s)	98, 153
MluCI	AATT	6 cut(s)	182, 277, 524, 790, 863, 940
MlyI	GAGTC	1 cut(s)	490
MmeI	TCCRAC	1 cut(s)	263
MseI	TTAA	3 cut(s)	201, 443, 837
MslI	CAYNNNNRTG	1 cut(s)	368
MspI	CCGG	6 cut(s)	51, 98, 118, 154, 624, 774
MspR9I	CCNGG	7 cut(s)	52, 98, 119, 154, 339, 775, 924
MvaI	CCWGG	2 cut(s)	339, 924
MwoI	GCNNNNNNNGC	1 cut(s)	916
NciI	CCSGG	5 cut(s)	52, 98, 119, 154, 775
NdeII	GATC	3 cut(s)	287, 796, 853
NheI	GCTAGC	1 cut(s)	449
NlaIII	CATG	7 cut(s)	130, 175, 191, 223, 247, 373, 604
NlaIV	GGNNCC	1 cut(s)	158
NmeAIII	GCCGAG	1 cut(s)	504
NmuCI	GTSAC	3 cut(s)	564, 709, 902
PagI	TCATGA	1 cut(s)	126
PfoI	TCCNGGA	1 cut(s)	773
PkrI	GCNGC	2 cut(s)	58, 66
PleI	GAGTC	1 cut(s)	489
PpsI	GAGTC	1 cut(s)	489
Psp6I	CCWGG	2 cut(s)	337, 922
PspGI	CCWGG	2 cut(s)	337, 922
PspN4I	GGNNCC	1 cut(s)	158
PspPI	GGNCC	2 cut(s)	404, 700
PstNI	CAGNNNCTG	1 cut(s)	644
PsuI	RGATCY	1 cut(s)	287
RsaI	GTAC	2 cut(s)	614, 755
RsaNI	GTAC	2 cut(s)	613, 754
RseI	CAYNNNNRTG	1 cut(s)	368
SaqAI	TTAA	3 cut(s)	201, 443, 837
SatI	GCNGC	2 cut(s)	57, 65
Sau3AI	GATC	3 cut(s)	287, 796, 853
Sau96I	GGNCC	2 cut(s)	404, 700
ScaI	AGTACT	1 cut(s)	755
SchI	GAGTC	1 cut(s)	490
ScrFI	CCNGG	7 cut(s)	52, 98, 119, 154, 339, 775, 924
SduI	GDGCHC	2 cut(s)	98, 153
SfaNI	GCATC	4 cut(s)	202, 373, 484, 715
SinI	GGWCC	2 cut(s)	404, 700
SmiMI	CAYNNNNRTG	1 cut(s)	368
Sse9I	AATT	6 cut(s)	182, 277, 524, 790, 863, 940
SsiI	CCGC	3 cut(s)	56, 586, 818
SspI	AATATT	1 cut(s)	741
SspMI	CTAG	2 cut(s)	378, 450
StyD4I	CCNGG	7 cut(s)	50, 96, 117, 152, 337, 773, 922
StyI	CCWWGG	1 cut(s)	321
TaiI	ACGT	1 cut(s)	95
TaqII	GACCGA	1 cut(s)	157
TasI	AATT	6 cut(s)	182, 277, 524, 790, 863, 940
TatI	WGTACW	2 cut(s)	612, 753
TauI	GCSGC	1 cut(s)	59
Tru1I	TTAA	3 cut(s)	201, 443, 837
Tru9I	TTAA	3 cut(s)	201, 443, 837
TscAI	CASTG	3 cut(s)	288, 634, 856
TseFI	GTSAC	3 cut(s)	564, 709, 902
TseI	GCWGC	1 cut(s)	64
Tsp45I	GTSAC	3 cut(s)	564, 709, 902
TspDTI	ATGAA	2 cut(s)	143, 321
TspRI	CASTG	3 cut(s)	288, 634, 856
VpaK11BI	GGWCC	2 cut(s)	404, 700
XapI	RAATTY	4 cut(s)	277, 524, 790, 863
XbaI	TCTAGA	1 cut(s)	377
XcmI	CCANNNNNNNNNTGG	2 cut(s)	626, 710
XspI	CTAG	2 cut(s)	378, 450
ZrmI	AGTACT	1 cut(s)	755

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.