Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0002664

Physical Location & Seq

Genomic Coordinates Reverse (-)

23982076 .. 23983511

Gene Structure 1436 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g28210.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 981 bp

ATGTCTCCTCTCTTTTCACTCTTCATCCTACTCATAATAACCGGGGCCACAGCGCAACTTCGCCCTGGTTATTACTCGGGAACCTGCCCAAAAGCCGAATCCATTGTCCAAGATGTCATGAAGGCAGCTCTGATCCGAGAGCCACGGAGTCTTGCCTCGGTCATGCGCTTACAGTTCCATGATTGCTTTGTCAATGGTTGTGATGCTTCATTGTTGCTTGATGACACACCAACCATGCTAGGAGAAAAACTAGCCCTTGCAAACATTAATTCACTGAGATCTTACAAAGTTGTTGATGAAGCGAAAGAAGCCTTGGAGAAGGTGTGTCCGGGAGTTGTTTCTTGCGCAGACATTATAATCATGGCATCTAGAGATGCTGTTGCTCTGACAGGGGGGCCTTGTTGGGAAGTGAAGTTAGGAAGGTTGGATAGCTTAACAGCAAGCCAAGAAGCCTCAGACAACATTATGCCAAGTCCAAGATCCAATGCGACATTCCTCATTGACCTGTTTGCCAAATTTAATCTCTCTGTTAAAGATCTCGTTGCGCTTTCGGGTTCACACTCCATCGGCAAAGCTCGGTGCTTTTCCATCATGTTTCGGCTGTACAACCAATCTGGCAGTGGCCGGCCAGACCCTGCCATTGAACCAAAGTTTAGACAAAAGCTAGACAAGCTTTGCCCACTAGACGTGGACCAAAACGTTACAGGTGACCTAGATGCTACGCCTGTAGAGTTTGATAACCAGTACTTCAAGGACTTGGTTGCCCGGAGAGGTTTTCTTAACTCGGATCAAACGCTTTTCACGTTTCCGGAAACGAGGGGATTTGTGAAGCAGTTCAACATTGATGAAGGAGAATTTTTCAAGGCATTTGTGGATGGGATGATAAAGATGGGTGACTTGAAGGTGGATCAGCCTGGGGAAGTAAGAAAGAATTGCAGGGTGGTTAATAGTCATTCTTCTAATTTTCCCAATGAATTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006725 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009505 GO:0009698 GO:0009699 GO:0009791 GO:0009808 GO:0009809 GO:0009987 GO:0010228 GO:0019438 GO:0019748 GO:0022414 GO:0030312 GO:0032501 GO:0032502 GO:0044237 GO:0044249 GO:0044424 GO:0044444 GO:0044464 GO:0044550 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0071944 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

peroxidase

Protein Analysis

327

Amino Acids

35.98

Weight (kDa)

5.56

Isoelectric Point (pI)

36.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002664)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22420
fragaria_vesca	FvH4_1g20350 FvH4_1g20360 FvH4_1g20360
malus_domestica	MD01G1034400.v1.1 MD01G1034500.v1.1 MD01G1034900.v1.1 MD15G1321200.v1.1 MD15G1321300.v1.1 MD15G1321400.v1.1
prunus_persica	Prupe.6G191800_v2.0.a1 Prupe.6G191900_v2.0.a1 Prupe.6G192000_v2.0.a1
pyrus_communis	pycom01g06150 pycom01g06160 pycom01g06190 pycom15g28200 pycom15g28210
rosa_chinensis	RchiOBHm_Chr2g0112481 RchiOBHm_Chr2g0112491
rosa_laevigata	RLG00000017984 RLG00000017985
rosa_multiflora	Rmu_co8298115.1_g000001 Rmu_co8310909.1_g000001 Rmu_sc0013522.1_g000001 Rmu_sc0026466.1_g000001
rosa_roxburghii	Rroxscaffold_2G00131380 Rroxscaffold_2G00131390
rosa_rugosa	Rorug02G0181300 Rorug02G0181300
rosa_samantha	Rh2AG234300 Rh2AG234400 Rh2BG247900 Rh2BG248000 Rh2CG238900 Rh2CG239000 Rh2DG241900 Rh2DG242000
rosa_wichuraiana	Rw2G018150 Rw2G018160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	356
Acc16I	TGCGCA	1 cut(s)	346
Acc36I	ACCTGC	1 cut(s)	92
AccIII	TCCGGA	1 cut(s)	808
AclI	AACGTT	1 cut(s)	699
AclWI	GGATC	4 cut(s)	127, 474, 795, 915
AcoI	YGGCCR	2 cut(s)	622, 626
AcsI	RAATTY	3 cut(s)	515, 854, 974
AfaI	GTAC	2 cut(s)	605, 746
AgsI	TTSAA	5 cut(s)	644, 751, 838, 862, 901
AjiI	CACGTC	1 cut(s)	688
AjnI	CCWGG	2 cut(s)	64, 913
AjuI	GAANNNNNNNTTGG	4 cut(s)	296, 328, 476, 508
AluBI	AGCT	5 cut(s)	128, 432, 575, 664, 673
AluI	AGCT	5 cut(s)	128, 432, 575, 664, 673
Alw26I	GTCTC	1 cut(s)	9
AlwI	GGATC	4 cut(s)	127, 474, 795, 915
AlwNI	CAGNNNCTG	1 cut(s)	635
Ama87I	CYCGRG	1 cut(s)	76
Aor13HI	TCCGGA	1 cut(s)	808
AoxI	GGCC	4 cut(s)	45, 395, 622, 626
ApeKI	GCWGC	1 cut(s)	125
ApoI	RAATTY	3 cut(s)	515, 854, 974
ArsI	GACNNNNNNTTYG	2 cut(s)	90, 122
AseI	ATTAAT	1 cut(s)	267
Asp700I	GAANNNNTTC	1 cut(s)	833
AspLEI	GCGC	4 cut(s)	55, 168, 347, 547
AspS9I	GGNCC	3 cut(s)	45, 395, 691
AsuC2I	CCSGG	3 cut(s)	43, 330, 766
AsuHPI	GGTGA	2 cut(s)	719, 905
AvaI	CYCGRG	1 cut(s)	76
AvaII	GGWCC	1 cut(s)	691
BbvI	GCAGC	1 cut(s)	137
BccI	CCATC	4 cut(s)	572, 596, 869, 883
BciT130I	CCWGG	2 cut(s)	66, 915
BcnI	CCSGG	3 cut(s)	43, 330, 766
BcoDI	GTCTC	1 cut(s)	9
BfaI	CTAG	7 cut(s)	239, 251, 369, 665, 683, 713, 979
BfmI	CTRYAG	1 cut(s)	726
BfuAI	ACCTGC	1 cut(s)	92
BglII	AGATCT	2 cut(s)	278, 535
BisI	GCNGC	1 cut(s)	126
BlsI	GCNGC	1 cut(s)	127
BmcAI	AGTACT	1 cut(s)	746
Bme1390I	CCNGG	5 cut(s)	43, 66, 330, 766, 915
Bme18I	GGWCC	1 cut(s)	691
BmeT110I	CYCGRG	1 cut(s)	76
BmgBI	CACGTC	1 cut(s)	688
BmgT120I	GGNCC	3 cut(s)	45, 395, 691
BmiI	GGNNCC	3 cut(s)	46, 82, 396
BmrFI	CCNGG	5 cut(s)	43, 66, 330, 766, 915
BmsI	GCATC	4 cut(s)	193, 364, 374, 706
BpuMI	CCSGG	3 cut(s)	43, 330, 766
BsaJI	CCNNGG	6 cut(s)	42, 64, 143, 156, 312, 914
BsaWI	WCCGGW	1 cut(s)	808
BsaXI	ACNNNNNCTCC	2 cut(s)	308, 338
Bse118I	RCCGGY	1 cut(s)	624
Bse1I	ACTGG	1 cut(s)	742
BseAI	TCCGGA	1 cut(s)	808
BseBI	CCWGG	2 cut(s)	66, 915
BseDI	CCNNGG	6 cut(s)	42, 64, 143, 156, 312, 914
BseGI	GGATG	3 cut(s)	24, 880, 885
BseMII	CTCAG	2 cut(s)	266, 468
BseNI	ACTGG	1 cut(s)	742
BseXI	GCAGC	1 cut(s)	137
BshFI	GGCC	4 cut(s)	47, 397, 624, 628
BsiHKCI	CYCGRG	1 cut(s)	76
BsiSI	CCGG	5 cut(s)	42, 329, 625, 766, 809
BsmAI	GTCTC	1 cut(s)	9
BsnI	GGCC	4 cut(s)	47, 397, 624, 628
BsoBI	CYCGRG	1 cut(s)	76
Bsp13I	TCCGGA	1 cut(s)	808
Bsp1407I	TGTACA	1 cut(s)	603
Bsp143I	GATC	6 cut(s)	132, 278, 479, 535, 787, 907
BspANI	GGCC	4 cut(s)	47, 397, 624, 628
BspCNI	CTCAG	2 cut(s)	267, 467
BspEI	TCCGGA	1 cut(s)	808
BspHI	TCATGA	1 cut(s)	117
BspLI	GGNNCC	3 cut(s)	46, 82, 396
BspMI	ACCTGC	1 cut(s)	92
BspPI	GGATC	4 cut(s)	127, 474, 795, 915
BsrFI	RCCGGY	1 cut(s)	624
BsrGI	TGTACA	1 cut(s)	603
BsrI	ACTGG	1 cut(s)	742
BssAI	RCCGGY	1 cut(s)	624
BssECI	CCNNGG	6 cut(s)	42, 64, 143, 156, 312, 914
BssMI	GATC	6 cut(s)	132, 278, 479, 535, 787, 907
BssT1I	CCWWGG	1 cut(s)	312
Bst2UI	CCWGG	2 cut(s)	66, 915
Bst4CI	ACNGT	1 cut(s)	174
Bst6I	CTCTTC	1 cut(s)	26
BstAUI	TGTACA	1 cut(s)	603
BstC8I	GCNNGC	2 cut(s)	442, 626
BstDEI	CTNAG	2 cut(s)	275, 454
BstDSI	CCRYGG	1 cut(s)	143
BstEII	GGTNACC	1 cut(s)	707
BstF5I	GGATG	3 cut(s)	24, 880, 885
BstHHI	GCGC	4 cut(s)	55, 168, 347, 547
BstKTI	GATC	6 cut(s)	135, 281, 482, 538, 790, 910
BstMAI	GTCTC	1 cut(s)	9
BstMBI	GATC	6 cut(s)	132, 278, 479, 535, 787, 907
BstMWI	GCNNNNNNNGC	2 cut(s)	308, 670
BstNI	CCWGG	2 cut(s)	66, 915
BstPI	GGTNACC	1 cut(s)	707
BstSCI	CCNGG	5 cut(s)	41, 64, 328, 764, 913
BstSFI	CTRYAG	1 cut(s)	726
BstV1I	GCAGC	1 cut(s)	137
BstX2I	RGATCY	3 cut(s)	278, 479, 535
BstYI	RGATCY	3 cut(s)	278, 479, 535
BsuRI	GGCC	4 cut(s)	47, 397, 624, 628
BtgI	CCRYGG	1 cut(s)	143
BtrI	CACGTC	1 cut(s)	688
BtsCI	GGATG	3 cut(s)	24, 880, 885
BtsI	GCAGTG	1 cut(s)	625
BtsIMutI	CAGTG	2 cut(s)	272, 625
BveI	ACCTGC	1 cut(s)	92
Cac8I	GCNNGC	2 cut(s)	442, 626
CaiI	CAGNNNCTG	1 cut(s)	635
CciI	TCATGA	1 cut(s)	117
CfoI	GCGC	4 cut(s)	55, 168, 347, 547
Cfr10I	RCCGGY	1 cut(s)	624
Cfr13I	GGNCC	3 cut(s)	45, 395, 691
Csp6I	GTAC	2 cut(s)	604, 745
CviAII	CATG	6 cut(s)	118, 163, 179, 235, 361, 592
CviQI	GTAC	2 cut(s)	604, 745
DdeI	CTNAG	2 cut(s)	275, 454
DpnI	GATC	6 cut(s)	134, 280, 481, 537, 789, 909
DpnII	GATC	6 cut(s)	132, 278, 479, 535, 787, 907
EaeI	YGGCCR	2 cut(s)	622, 626
Eam1104I	CTCTTC	1 cut(s)	26
EarI	CTCTTC	1 cut(s)	26
Eco130I	CCWWGG	1 cut(s)	312
Eco47I	GGWCC	1 cut(s)	691
Eco88I	CYCGRG	1 cut(s)	76
Eco91I	GGTNACC	1 cut(s)	707
EcoO109I	RGGNCCY	1 cut(s)	395
EcoO65I	GGTNACC	1 cut(s)	707
EcoRI	GAATTC	1 cut(s)	974
EcoRII	CCWGG	2 cut(s)	64, 913
EcoT14I	CCWWGG	1 cut(s)	312
ErhI	CCWWGG	1 cut(s)	312
FaeI	CATG	6 cut(s)	121, 166, 182, 238, 364, 595
FaiI	YATR	9 cut(s)	35, 119, 164, 180, 236, 356, 362, 467, 593
FatI	CATG	6 cut(s)	117, 162, 178, 234, 360, 591
Fnu4HI	GCNGC	1 cut(s)	126
FokI	GGATG	3 cut(s)	11, 887, 892
FseI	GGCCGGCC	1 cut(s)	628
Fsp4HI	GCNGC	1 cut(s)	126
FspBI	CTAG	7 cut(s)	239, 251, 369, 665, 683, 713, 979
FspI	TGCGCA	1 cut(s)	346
GlaI	GCGC	4 cut(s)	54, 167, 346, 546
GluI	GCNGC	1 cut(s)	126
HaeIII	GGCC	4 cut(s)	47, 397, 624, 628
HapII	CCGG	5 cut(s)	42, 329, 625, 766, 809
HhaI	GCGC	4 cut(s)	55, 168, 347, 547
Hin1II	CATG	6 cut(s)	121, 166, 182, 238, 364, 595
Hin6I	GCGC	4 cut(s)	53, 166, 345, 545
HinP1I	GCGC	4 cut(s)	53, 166, 345, 545
HindIII	AAGCTT	1 cut(s)	671
HinfI	GANTC	2 cut(s)	98, 148
HpaII	CCGG	5 cut(s)	42, 329, 625, 766, 809
HphI	GGTGA	2 cut(s)	719, 905
Hpy166II	GTNNAC	2 cut(s)	557, 691
Hpy188I	TCNGA	5 cut(s)	132, 137, 387, 457, 787
Hpy188III	TCNNGA	4 cut(s)	78, 118, 369, 809
Hpy8I	GTNNAC	2 cut(s)	557, 691
HpyAV	CCTTC	5 cut(s)	115, 313, 414, 842, 895
HpyCH4III	ACNGT	1 cut(s)	174
HpyCH4IV	ACGT	3 cut(s)	687, 699, 803
HpyCH4V	TGCA	2 cut(s)	260, 936
HpyF10VI	GCNNNNNNNGC	2 cut(s)	308, 670
HpyF3I	CTNAG	2 cut(s)	275, 454
HpySE526I	ACGT	3 cut(s)	687, 699, 803
Hsp92II	CATG	6 cut(s)	121, 166, 182, 238, 364, 595
HspAI	GCGC	4 cut(s)	53, 166, 345, 545
Kpn2I	TCCGGA	1 cut(s)	808
KroI	GCCGGC	1 cut(s)	624
KroNI	GCCGGC	1 cut(s)	626
Kzo9I	GATC	6 cut(s)	132, 278, 479, 535, 787, 907
Lsp1109I	GCAGC	1 cut(s)	137
LweI	GCATC	4 cut(s)	193, 364, 374, 706
MaeI	CTAG	7 cut(s)	239, 251, 369, 665, 683, 713, 979
MaeII	ACGT	3 cut(s)	687, 699, 803
MaeIII	GTNAC	3 cut(s)	700, 707, 893
MalI	GATC	6 cut(s)	134, 280, 481, 537, 789, 909
MboI	GATC	6 cut(s)	132, 278, 479, 535, 787, 907
MboII	GAAGA	2 cut(s)	13, 948
MflI	RGATCY	3 cut(s)	278, 479, 535
MluCI	AATT	6 cut(s)	268, 515, 854, 931, 961, 974
MlyI	GAGTC	1 cut(s)	157
MmeI	TCCRAC	1 cut(s)	405
MnlI	CCTC	6 cut(s)	18, 166, 463, 506, 764, 810
MroI	TCCGGA	1 cut(s)	808
MroNI	GCCGGC	1 cut(s)	624
MroXI	GAANNNNTTC	1 cut(s)	833
MseI	TTAA	6 cut(s)	267, 434, 519, 531, 780, 945
MspI	CCGG	5 cut(s)	42, 329, 625, 766, 809
MspR9I	CCNGG	5 cut(s)	43, 66, 330, 766, 915
MvaI	CCWGG	2 cut(s)	66, 915
MwoI	GCNNNNNNNGC	2 cut(s)	308, 670
NaeI	GCCGGC	1 cut(s)	626
NciI	CCSGG	3 cut(s)	43, 330, 766
NdeII	GATC	6 cut(s)	132, 278, 479, 535, 787, 907
NgoMIV	GCCGGC	1 cut(s)	624
NlaIII	CATG	6 cut(s)	121, 166, 182, 238, 364, 595
NlaIV	GGNNCC	3 cut(s)	46, 82, 396
NmuCI	GTSAC	2 cut(s)	707, 893
NsbI	TGCGCA	1 cut(s)	346
PagI	TCATGA	1 cut(s)	117
PcsI	WCGNNNNNNNCGW	1 cut(s)	800
PdiI	GCCGGC	1 cut(s)	626
PdmI	GAANNNNTTC	1 cut(s)	833
PfeI	GAWTC	1 cut(s)	98
PfoI	TCCNGGA	1 cut(s)	328
PkrI	GCNGC	1 cut(s)	127
PleI	GAGTC	1 cut(s)	156
PpsI	GAGTC	1 cut(s)	156
PshBI	ATTAAT	1 cut(s)	267
PsiI	TTATAA	1 cut(s)	356
Psp1406I	AACGTT	1 cut(s)	699
Psp6I	CCWGG	2 cut(s)	64, 913
PspEI	GGTNACC	1 cut(s)	707
PspGI	CCWGG	2 cut(s)	64, 913
PspN4I	GGNNCC	3 cut(s)	46, 82, 396
PspPI	GGNCC	3 cut(s)	45, 395, 691
PstNI	CAGNNNCTG	1 cut(s)	635
PsuI	RGATCY	3 cut(s)	278, 479, 535
RigI	GGCCGGCC	1 cut(s)	628
RsaI	GTAC	2 cut(s)	605, 746
RsaNI	GTAC	2 cut(s)	604, 745
SaqAI	TTAA	6 cut(s)	267, 434, 519, 531, 780, 945
SatI	GCNGC	1 cut(s)	126
Sau3AI	GATC	6 cut(s)	132, 278, 479, 535, 787, 907
Sau96I	GGNCC	3 cut(s)	45, 395, 691
ScaI	AGTACT	1 cut(s)	746
SchI	GAGTC	1 cut(s)	157
ScrFI	CCNGG	5 cut(s)	43, 66, 330, 766, 915
SfaNI	GCATC	4 cut(s)	193, 364, 374, 706
SfcI	CTRYAG	1 cut(s)	726
SinI	GGWCC	1 cut(s)	691
Sse9I	AATT	6 cut(s)	268, 515, 854, 931, 961, 974
SspMI	CTAG	7 cut(s)	239, 251, 369, 665, 683, 713, 979
StyD4I	CCNGG	5 cut(s)	41, 64, 328, 764, 913
StyI	CCWWGG	1 cut(s)	312
TaaI	ACNGT	1 cut(s)	174
TaiI	ACGT	3 cut(s)	690, 702, 806
TaqII	GACCGA	1 cut(s)	148
TasI	AATT	6 cut(s)	268, 515, 854, 931, 961, 974
TatI	WGTACW	2 cut(s)	603, 744
TfiI	GAWTC	1 cut(s)	98
Tru1I	TTAA	6 cut(s)	267, 434, 519, 531, 780, 945
Tru9I	TTAA	6 cut(s)	267, 434, 519, 531, 780, 945
TscAI	CASTG	2 cut(s)	279, 625
TseFI	GTSAC	2 cut(s)	707, 893
TseI	GCWGC	1 cut(s)	125
Tsp45I	GTSAC	2 cut(s)	707, 893
TspDTI	ATGAA	5 cut(s)	13, 134, 198, 312, 861
TspGWI	ACGGA	1 cut(s)	160
TspRI	CASTG	2 cut(s)	279, 625
VpaK11BI	GGWCC	1 cut(s)	691
VspI	ATTAAT	1 cut(s)	267
XapI	RAATTY	3 cut(s)	515, 854, 974
XbaI	TCTAGA	1 cut(s)	368
XcmI	CCANNNNNNNNNTGG	1 cut(s)	617
XmnI	GAANNNNTTC	1 cut(s)	833
XspI	CTAG	7 cut(s)	239, 251, 369, 665, 683, 713, 979
ZrmI	AGTACT	1 cut(s)	746

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.