Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0002664

Physical Location & Seq

Genomic Coordinates Reverse (-)

12563991 .. 12565582

Gene Structure 1592 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g20350.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 963 bp

ATGTCTCCTCTCTTGATAATCTTCCTCCTACACATGACAACCGGTGCCACCGCAGACCTCCGGACCGGTTATTACTCGGGAGTGTGCCCAAAAGCCGAATCCATCGTCCGAGATGTCATGAAGAAGGCTTTGATAAGAGAACCCCGGAGCCTTGCCTCAGTCATGCGACTCCAGTTTCATGATTGCTTTGTTAATGGTTGTGATGCTTCACTGTTACTTGATGACACACCAACTATGCTCGGAGAAAAACTCGCCCTTGCAAATATAAATTCATTGAGATCTTATGAAGTTGTTGATGAAGCCAAGGAAGCTTTGGAGAAGGCATGTCCTGGAGTTGTTTCATGCGCTGATATCATTATCATGGCTTCTAGAGATGCTGTTGCCCTGACTGGAGGACCAGGTTGGGAAGTGAAGTTGGGAAGATTGGATAGCTTAACAGCAAGCCAAGAAGCTTCAGACAATGTAATGCCAAGTCCAAGATCCAATGCCACCTTTCTCATTGATCTATTCAGCAAATTCAATCTTTCTGCAAAAGACATGGTTGCGCTCTCTGGATCACATTCCATTGGCAAAGCTCGGTGCTTTTCGATCATGTTTCAGCTGTATAACCAATCTGGCACTGGCAAGCCGGACCCTGCCATTGAACCCAAGTTTAGAGAAAAGCTAGACAAGCTCTGTCCTTTGAATGTGGACCAAAACGTGACCGGAGACCTTGATGCAACATCAGTGCTATTTGATAATCAGTACTTCAAGGACTTGGTTTCCGGGAGAGGGTTTCTGAATTCGGATCAAACTCTTTTCACATTTCCGCGGACAAGGGAATTTGTTAATCAGTTCAGCATTGATCAAGAAGGATTTTTCAAGGCTTTTGTTGAGGGGATGCTAAAGATGGGTGACTTGCAGGTCCAGCAACCTGGGGAGATAAGGAAAAATTGCAGGGTGGTCAATCCAAAAAATAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006725 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009505 GO:0009698 GO:0009699 GO:0009791 GO:0009808 GO:0009809 GO:0009987 GO:0010228 GO:0019438 GO:0019748 GO:0022414 GO:0030312 GO:0032501 GO:0032502 GO:0044237 GO:0044249 GO:0044424 GO:0044444 GO:0044464 GO:0044550 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0071944 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

peroxidase

Protein Analysis

321

Amino Acids

35.24

Weight (kDa)

5.75

Isoelectric Point (pI)

31.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
peroxidase	PF00141	36 - 280	1.8e-75	Peroxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002664)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22420
fragaria_vesca	FvH4_1g20350 FvH4_1g20360 FvH4_1g20360
malus_domestica	MD01G1034400.v1.1 MD01G1034500.v1.1 MD01G1034900.v1.1 MD15G1321200.v1.1 MD15G1321300.v1.1 MD15G1321400.v1.1
prunus_persica	Prupe.6G191800_v2.0.a1 Prupe.6G191900_v2.0.a1 Prupe.6G192000_v2.0.a1
pyrus_communis	pycom01g06150 pycom01g06160 pycom01g06190 pycom15g28200 pycom15g28210
rosa_chinensis	RchiOBHm_Chr2g0112481 RchiOBHm_Chr2g0112491
rosa_laevigata	RLG00000017984 RLG00000017985
rosa_multiflora	Rmu_co8298115.1_g000001 Rmu_co8310909.1_g000001 Rmu_sc0013522.1_g000001 Rmu_sc0026466.1_g000001
rosa_roxburghii	Rroxscaffold_2G00131380 Rroxscaffold_2G00131390
rosa_rugosa	Rorug02G0181300 Rorug02G0181300
rosa_samantha	Rh2AG234300 Rh2AG234400 Rh2BG247900 Rh2BG248000 Rh2CG238900 Rh2CG239000 Rh2DG241900 Rh2DG242000
rosa_wichuraiana	Rw2G018150 Rw2G018160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	902
Acc36I	ACCTGC	1 cut(s)	892
AccB1I	GGYRCC	1 cut(s)	44
AccII	CGCG	1 cut(s)	811
AccIII	TCCGGA	1 cut(s)	60
AciI	CCGC	3 cut(s)	51, 809, 811
AclWI	GGATC	3 cut(s)	474, 562, 795
AcsI	RAATTY	4 cut(s)	268, 515, 781, 821
AcuI	CTGAAG	1 cut(s)	438
AfaI	GTAC	1 cut(s)	746
AfiI	CCNNNNNNNGG	1 cut(s)	771
AgeI	ACCGGT	2 cut(s)	41, 65
AgsI	TTSAA	5 cut(s)	520, 644, 685, 751, 862
AjnI	CCWGG	3 cut(s)	328, 397, 913
AluBI	AGCT	7 cut(s)	311, 432, 452, 575, 601, 664, 673
AluI	AGCT	7 cut(s)	311, 432, 452, 575, 601, 664, 673
Alw26I	GTCTC	2 cut(s)	9, 702
AlwI	GGATC	3 cut(s)	474, 562, 795
Ama87I	CYCGRG	1 cut(s)	76
Aor13HI	TCCGGA	1 cut(s)	60
ApoI	RAATTY	4 cut(s)	268, 515, 781, 821
ArsI	GACNNNNNNTTYG	2 cut(s)	90, 122
AsiGI	ACCGGT	2 cut(s)	41, 65
AspLEI	GCGC	2 cut(s)	347, 547
AspS9I	GGNCC	5 cut(s)	63, 395, 631, 691, 904
AsuC2I	CCSGG	2 cut(s)	145, 766
AsuHPI	GGTGA	1 cut(s)	905
AvaI	CYCGRG	1 cut(s)	76
AvaII	GGWCC	5 cut(s)	63, 395, 631, 691, 904
BaeGI	GKGCMC	1 cut(s)	89
BanI	GGYRCC	1 cut(s)	44
BccI	CCATC	2 cut(s)	110, 883
BciT130I	CCWGG	3 cut(s)	330, 399, 915
BclI	TGATCA	1 cut(s)	844
BcnI	CCSGG	2 cut(s)	145, 766
BcoDI	GTCTC	2 cut(s)	9, 702
BfaI	CTAG	2 cut(s)	369, 665
BfuAI	ACCTGC	1 cut(s)	892
BglII	AGATCT	1 cut(s)	278
BmcAI	AGTACT	1 cut(s)	746
Bme1390I	CCNGG	5 cut(s)	145, 330, 399, 766, 915
Bme18I	GGWCC	5 cut(s)	63, 395, 631, 691, 904
BmeT110I	CYCGRG	1 cut(s)	76
BmgT120I	GGNCC	5 cut(s)	63, 395, 631, 691, 904
BmiI	GGNNCC	3 cut(s)	46, 149, 633
BmrFI	CCNGG	5 cut(s)	145, 330, 399, 766, 915
BmsI	GCATC	4 cut(s)	193, 364, 706, 870
BplI	GAGNNNNNCTC	2 cut(s)	234, 266
BpmI	CTGGAG	3 cut(s)	155, 351, 411
BpuMI	CCSGG	2 cut(s)	145, 766
BsaI	GGTCTC	1 cut(s)	702
BsaJI	CCNNGG	4 cut(s)	143, 303, 809, 914
BsaWI	WCCGGW	4 cut(s)	41, 60, 65, 704
Bsc4I	CCNNNNNNNGG	1 cut(s)	771
Bse118I	RCCGGY	2 cut(s)	41, 65
Bse1I	ACTGG	3 cut(s)	172, 394, 625
BseAI	TCCGGA	1 cut(s)	60
BseBI	CCWGG	3 cut(s)	330, 399, 915
BseDI	CCNNGG	4 cut(s)	143, 303, 809, 914
BseGI	GGATG	1 cut(s)	885
BseLI	CCNNNNNNNGG	1 cut(s)	771
BseMII	CTCAG	1 cut(s)	171
BseNI	ACTGG	3 cut(s)	172, 394, 625
BseSI	GKGCMC	1 cut(s)	89
Bsh1236I	CGCG	1 cut(s)	811
BshNI	GGYRCC	1 cut(s)	44
BshTI	ACCGGT	2 cut(s)	41, 65
BsiHKCI	CYCGRG	1 cut(s)	76
BsiSI	CCGG	7 cut(s)	42, 61, 66, 145, 629, 705, 765
BslI	CCNNNNNNNGG	1 cut(s)	771
BsmAI	GTCTC	2 cut(s)	9, 702
Bso31I	GGTCTC	1 cut(s)	702
BsoBI	CYCGRG	1 cut(s)	76
Bsp1286I	GDGCHC	1 cut(s)	89
Bsp13I	TCCGGA	1 cut(s)	60
Bsp143I	GATC	7 cut(s)	278, 479, 502, 554, 588, 787, 844
BspACI	CCGC	3 cut(s)	51, 809, 811
BspCNI	CTCAG	1 cut(s)	170
BspEI	TCCGGA	1 cut(s)	60
BspFNI	CGCG	1 cut(s)	811
BspHI	TCATGA	2 cut(s)	117, 178
BspLI	GGNNCC	3 cut(s)	46, 149, 633
BspMI	ACCTGC	1 cut(s)	892
BspPI	GGATC	3 cut(s)	474, 562, 795
BspT107I	GGYRCC	1 cut(s)	44
BspTNI	GGTCTC	1 cut(s)	702
BsrFI	RCCGGY	2 cut(s)	41, 65
BsrI	ACTGG	3 cut(s)	172, 394, 625
BssAI	RCCGGY	2 cut(s)	41, 65
BssECI	CCNNGG	4 cut(s)	143, 303, 809, 914
BssMI	GATC	7 cut(s)	278, 479, 502, 554, 588, 787, 844
BssT1I	CCWWGG	1 cut(s)	303
Bst2UI	CCWGG	3 cut(s)	330, 399, 915
Bst4CI	ACNGT	1 cut(s)	213
BstC8I	GCNNGC	2 cut(s)	442, 626
BstDEI	CTNAG	1 cut(s)	157
BstDSI	CCRYGG	1 cut(s)	809
BstF5I	GGATG	1 cut(s)	885
BstFNI	CGCG	1 cut(s)	811
BstHHI	GCGC	2 cut(s)	347, 547
BstKTI	GATC	7 cut(s)	281, 482, 505, 557, 591, 790, 847
BstMAI	GTCTC	2 cut(s)	9, 702
BstMBI	GATC	7 cut(s)	278, 479, 502, 554, 588, 787, 844
BstMWI	GCNNNNNNNGC	3 cut(s)	308, 670, 907
BstNI	CCWGG	3 cut(s)	330, 399, 915
BstNSI	RCATGY	1 cut(s)	327
BstSCI	CCNGG	5 cut(s)	143, 328, 397, 764, 913
BstSLI	GKGCMC	1 cut(s)	89
BstUI	CGCG	1 cut(s)	811
BstX2I	RGATCY	2 cut(s)	278, 479
BstXI	CCANNNNNNTGG	1 cut(s)	914
BstYI	RGATCY	2 cut(s)	278, 479
BtgI	CCRYGG	1 cut(s)	809
BtsCI	GGATG	1 cut(s)	885
BtsIMutI	CAGTG	3 cut(s)	209, 618, 732
BveI	ACCTGC	1 cut(s)	892
Cac8I	GCNNGC	2 cut(s)	442, 626
CciI	TCATGA	2 cut(s)	117, 178
CfoI	GCGC	2 cut(s)	347, 547
Cfr10I	RCCGGY	2 cut(s)	41, 65
Cfr13I	GGNCC	5 cut(s)	63, 395, 631, 691, 904
Cfr42I	CCGCGG	1 cut(s)	812
CpoI	CGGWCCG	1 cut(s)	63
CsiI	ACCWGGT	1 cut(s)	397
Csp6I	GTAC	1 cut(s)	745
CspAI	ACCGGT	2 cut(s)	41, 65
CspI	CGGWCCG	1 cut(s)	63
CviAII	CATG	9 cut(s)	34, 118, 163, 179, 324, 342, 361, 538, 592
CviQI	GTAC	1 cut(s)	745
DdeI	CTNAG	1 cut(s)	157
DpnI	GATC	7 cut(s)	280, 481, 504, 556, 590, 789, 846
DpnII	GATC	7 cut(s)	278, 479, 502, 554, 588, 787, 844
DrdI	GACNNNNNNGTC	1 cut(s)	902
DseDI	GACNNNNNNGTC	1 cut(s)	902
Eco130I	CCWWGG	1 cut(s)	303
Eco31I	GGTCTC	1 cut(s)	702
Eco32I	GATATC	1 cut(s)	352
Eco47I	GGWCC	5 cut(s)	63, 395, 631, 691, 904
Eco57I	CTGAAG	1 cut(s)	438
Eco88I	CYCGRG	1 cut(s)	76
EcoRI	GAATTC	1 cut(s)	781
EcoRII	CCWGG	3 cut(s)	328, 397, 913
EcoRV	GATATC	1 cut(s)	352
EcoT14I	CCWWGG	1 cut(s)	303
ErhI	CCWWGG	1 cut(s)	303
FaeI	CATG	9 cut(s)	37, 121, 166, 182, 327, 345, 364, 541, 595
FatI	CATG	9 cut(s)	33, 117, 162, 178, 323, 341, 360, 537, 591
FbaI	TGATCA	1 cut(s)	844
FokI	GGATG	1 cut(s)	892
FspBI	CTAG	2 cut(s)	369, 665
GlaI	GCGC	2 cut(s)	346, 546
GsuI	CTGGAG	3 cut(s)	155, 351, 411
HapII	CCGG	7 cut(s)	42, 61, 66, 145, 629, 705, 765
HhaI	GCGC	2 cut(s)	347, 547
Hin1II	CATG	9 cut(s)	37, 121, 166, 182, 327, 345, 364, 541, 595
Hin6I	GCGC	2 cut(s)	345, 545
HinP1I	GCGC	2 cut(s)	345, 545
HindIII	AAGCTT	2 cut(s)	309, 450
HinfI	GANTC	2 cut(s)	98, 168
HpaII	CCGG	7 cut(s)	42, 61, 66, 145, 629, 705, 765
HphI	GGTGA	1 cut(s)	905
Hpy166II	GTNNAC	1 cut(s)	691
Hpy188I	TCNGA	5 cut(s)	110, 242, 457, 780, 787
Hpy188III	TCNNGA	8 cut(s)	13, 61, 78, 118, 179, 369, 552, 848
Hpy8I	GTNNAC	1 cut(s)	691
HpyAV	CCTTC	3 cut(s)	118, 313, 845
HpyCH4III	ACNGT	1 cut(s)	213
HpyCH4IV	ACGT	1 cut(s)	699
HpyCH4V	TGCA	5 cut(s)	260, 530, 719, 901, 936
HpyF10VI	GCNNNNNNNGC	3 cut(s)	308, 670, 907
HpyF3I	CTNAG	1 cut(s)	157
HpySE526I	ACGT	1 cut(s)	699
Hsp92II	CATG	9 cut(s)	37, 121, 166, 182, 327, 345, 364, 541, 595
HspAI	GCGC	2 cut(s)	345, 545
Kpn2I	TCCGGA	1 cut(s)	60
Ksp22I	TGATCA	1 cut(s)	844
KspI	CCGCGG	1 cut(s)	812
Kzo9I	GATC	7 cut(s)	278, 479, 502, 554, 588, 787, 844
LmnI	GCTCC	1 cut(s)	147
LweI	GCATC	4 cut(s)	193, 364, 706, 870
MabI	ACCWGGT	1 cut(s)	397
MaeI	CTAG	2 cut(s)	369, 665
MaeII	ACGT	1 cut(s)	699
MaeIII	GTNAC	3 cut(s)	213, 700, 893
MalI	GATC	7 cut(s)	280, 481, 504, 556, 590, 789, 846
MboI	GATC	7 cut(s)	278, 479, 502, 554, 588, 787, 844
MboII	GAAGA	3 cut(s)	13, 133, 432
MflI	RGATCY	2 cut(s)	278, 479
MhlI	GDGCHC	1 cut(s)	89
MluCI	AATT	6 cut(s)	268, 515, 781, 821, 931, 958
MlyI	GAGTC	1 cut(s)	162
MnlI	CCTC	7 cut(s)	18, 35, 68, 166, 386, 764, 868
MroI	TCCGGA	1 cut(s)	60
MseI	TTAA	4 cut(s)	192, 434, 828, 961
MslI	CAYNNNNRTG	1 cut(s)	359
MspA1I	CMGCKG	2 cut(s)	601, 811
MspI	CCGG	7 cut(s)	42, 61, 66, 145, 629, 705, 765
MspR9I	CCNGG	5 cut(s)	145, 330, 399, 766, 915
MvaI	CCWGG	3 cut(s)	330, 399, 915
MvnI	CGCG	1 cut(s)	811
MwoI	GCNNNNNNNGC	3 cut(s)	308, 670, 907
NciI	CCSGG	2 cut(s)	145, 766
NdeII	GATC	7 cut(s)	278, 479, 502, 554, 588, 787, 844
NlaIII	CATG	9 cut(s)	37, 121, 166, 182, 327, 345, 364, 541, 595
NlaIV	GGNNCC	3 cut(s)	46, 149, 633
NmuCI	GTSAC	2 cut(s)	700, 893
NspI	RCATGY	1 cut(s)	327
PagI	TCATGA	2 cut(s)	117, 178
PfeI	GAWTC	1 cut(s)	98
PfoI	TCCNGGA	2 cut(s)	328, 764
PinAI	ACCGGT	2 cut(s)	41, 65
PleI	GAGTC	1 cut(s)	162
PpsI	GAGTC	1 cut(s)	162
Psp6I	CCWGG	3 cut(s)	328, 397, 913
PspGI	CCWGG	3 cut(s)	328, 397, 913
PspN4I	GGNNCC	3 cut(s)	46, 149, 633
PspPI	GGNCC	5 cut(s)	63, 395, 631, 691, 904
PsuI	RGATCY	2 cut(s)	278, 479
PvuII	CAGCTG	1 cut(s)	601
RsaI	GTAC	1 cut(s)	746
RsaNI	GTAC	1 cut(s)	745
RseI	CAYNNNNRTG	1 cut(s)	359
Rsr2I	CGGWCCG	1 cut(s)	63
RsrII	CGGWCCG	1 cut(s)	63
SacII	CCGCGG	1 cut(s)	812
SaqAI	TTAA	4 cut(s)	192, 434, 828, 961
Sau3AI	GATC	7 cut(s)	278, 479, 502, 554, 588, 787, 844
Sau96I	GGNCC	5 cut(s)	63, 395, 631, 691, 904
ScaI	AGTACT	1 cut(s)	746
SchI	GAGTC	1 cut(s)	162
ScrFI	CCNGG	5 cut(s)	145, 330, 399, 766, 915
SduI	GDGCHC	1 cut(s)	89
SexAI	ACCWGGT	1 cut(s)	397
SfaNI	GCATC	4 cut(s)	193, 364, 706, 870
Sfr303I	CCGCGG	1 cut(s)	812
SgrBI	CCGCGG	1 cut(s)	812
SinI	GGWCC	5 cut(s)	63, 395, 631, 691, 904
SmiMI	CAYNNNNRTG	1 cut(s)	359
Sse9I	AATT	6 cut(s)	268, 515, 781, 821, 931, 958
SsiI	CCGC	3 cut(s)	51, 809, 811
SspMI	CTAG	2 cut(s)	369, 665
StyD4I	CCNGG	5 cut(s)	143, 328, 397, 764, 913
StyI	CCWWGG	1 cut(s)	303
TaaI	ACNGT	1 cut(s)	213
TaiI	ACGT	1 cut(s)	702
TaqI	TCGA	1 cut(s)	587
TasI	AATT	6 cut(s)	268, 515, 781, 821, 931, 958
TatI	WGTACW	1 cut(s)	744
TfiI	GAWTC	1 cut(s)	98
Tru1I	TTAA	4 cut(s)	192, 434, 828, 961
Tru9I	TTAA	4 cut(s)	192, 434, 828, 961
TscAI	CASTG	3 cut(s)	216, 625, 732
TseFI	GTSAC	2 cut(s)	700, 893
Tsp45I	GTSAC	2 cut(s)	700, 893
TspDTI	ATGAA	6 cut(s)	134, 167, 261, 300, 312, 330
TspRI	CASTG	3 cut(s)	216, 625, 732
VpaK11BI	GGWCC	5 cut(s)	63, 395, 631, 691, 904
XapI	RAATTY	4 cut(s)	268, 515, 781, 821
XbaI	TCTAGA	1 cut(s)	368
XceI	RCATGY	1 cut(s)	327
XcmI	CCANNNNNNNNNTGG	2 cut(s)	310, 617
XspI	CTAG	2 cut(s)	369, 665
ZrmI	AGTACT	1 cut(s)	746

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.