Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0002664

Physical Location & Seq

Genomic Coordinates Reverse (-)

24734600 .. 24736164

Gene Structure 1565 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG239000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1017 bp

ATGCACAAAGTTGGATTGGACATAAAGAAAAATACAATGTCTCCCCTCCTCTTTCCTCTCCTCCTCCTTCTTGTCCACATAATAACCGGGGCGGCCGTGCAGCTCTGCCCCGATTATTACTCCGAGACGTGCCCGGAAGCTGAAACCATAGTCCGGGGTGTCATGAAGAAGGCTTATGATAGAGAGCCCCGGAGCCTTGCCTCGGTCATGCGCTTCCAATTCCATGATTGCTTTGTTAATGGTTGTGATGCTTCTATGTTACTTGATGACACTCCAACCATGCTTGGGGAAAAACTCTCCCTTTCAAACATAAATTCACTGAGATCTTATGAGGTTGTTGATGAAGTCAAGGAAGCCTTGGAGAAAGCCTGTCCTGGTGTTGTTTCTTGTGCTGACATCATAATCATGGCTTCTAGAGATGCTGTTGCTCTGACTGGAGGACCAGATTGGCAAGTAAAGGTAGGGAGATTGGACAGCTTAACAGCTAGCCAAGAAGCCTCGGACAACATTATGCCGAGTCCAAGAGCCAATGCAACTTCCCTCATTGACCTCTTTGCCAAATTCAATCTTTCTGTCAAAGACCTTGTTGCACTTTCAGGGTCACACTCCATTGGACAGGGGCGGTGCTTTTCCATCATGTTTCGGATGTACAACCAATCCGGCACTGGCAGGCCAGACCCTGCCATTGAACCAAAGTTCAGAGAAAAGCTAAAGAAACTATGCCCTTTGAATGTGGACCAAAATGTGACTGGAGACCTTGATGCTACACCTATAATATTTGATAACCAGTACTTCAAGGACTTGGCTTCCGGGAGAGGGTTTCTGAATTCGGATCAAACACTTTTCACATTTCCGCAGACAAGAGGATTTGTTAAGCTGTTCAGCAGTGATCAAGGAGAATTTTTCAAGGCTTTTATTGAGGGGATGATAAAGATGGGTGACTTGCAGATTGAGCAACCTGGGGAGATAAGGAAAAATTGCAGGGTGGCTAATCGTCGCCCTATCAACACATTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006725 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009505 GO:0009698 GO:0009699 GO:0009791 GO:0009808 GO:0009809 GO:0009987 GO:0010228 GO:0019438 GO:0019748 GO:0022414 GO:0030312 GO:0032501 GO:0032502 GO:0044237 GO:0044249 GO:0044424 GO:0044444 GO:0044464 GO:0044550 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0071944 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

peroxidase

Protein Analysis

338

Amino Acids

37.47

Weight (kDa)

6.14

Isoelectric Point (pI)

39.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
peroxidase	PF00141	51 - 296	3.2e-75	Peroxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002664)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22420
fragaria_vesca	FvH4_1g20350 FvH4_1g20360 FvH4_1g20360
malus_domestica	MD01G1034400.v1.1 MD01G1034500.v1.1 MD01G1034900.v1.1 MD15G1321200.v1.1 MD15G1321300.v1.1 MD15G1321400.v1.1
prunus_persica	Prupe.6G191800_v2.0.a1 Prupe.6G191900_v2.0.a1 Prupe.6G192000_v2.0.a1
pyrus_communis	pycom01g06150 pycom01g06160 pycom01g06190 pycom15g28200 pycom15g28210
rosa_chinensis	RchiOBHm_Chr2g0112481 RchiOBHm_Chr2g0112491
rosa_laevigata	RLG00000017984 RLG00000017985
rosa_multiflora	Rmu_co8298115.1_g000001 Rmu_co8310909.1_g000001 Rmu_sc0013522.1_g000001 Rmu_sc0026466.1_g000001
rosa_roxburghii	Rroxscaffold_2G00131380 Rroxscaffold_2G00131390
rosa_rugosa	Rorug02G0181300 Rorug02G0181300
rosa_samantha	Rh2AG234300 Rh2AG234400 Rh2BG247900 Rh2BG248000 Rh2CG238900 Rh2CG239000 Rh2DG241900 Rh2DG242000
rosa_wichuraiana	Rw2G018150 Rw2G018160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	92, 622, 854
AclWI	GGATC	1 cut(s)	840
AcoI	YGGCCR	1 cut(s)	93
AcsI	RAATTY	4 cut(s)	313, 560, 826, 899
AfaI	GTAC	2 cut(s)	650, 791
AfiI	CCNNNNNNNGG	4 cut(s)	153, 202, 285, 816
AgsI	TTSAA	6 cut(s)	306, 565, 689, 730, 796, 907
AjiI	CACGTC	1 cut(s)	129
AjnI	CCWGG	2 cut(s)	373, 958
AluBI	AGCT	6 cut(s)	103, 140, 477, 485, 709, 877
AluI	AGCT	6 cut(s)	103, 140, 477, 485, 709, 877
Alw26I	GTCTC	3 cut(s)	45, 119, 747
AlwI	GGATC	1 cut(s)	840
AlwNI	CAGNNNCTG	1 cut(s)	680
AoxI	GGCC	2 cut(s)	93, 671
ApeKI	GCWGC	1 cut(s)	100
ApoI	RAATTY	4 cut(s)	313, 560, 826, 899
AspLEI	GCGC	1 cut(s)	213
AspS9I	GGNCC	2 cut(s)	440, 736
AsuC2I	CCSGG	5 cut(s)	88, 134, 155, 190, 811
AsuHPI	GGTGA	1 cut(s)	950
AsuNHI	GCTAGC	1 cut(s)	485
AvaII	GGWCC	2 cut(s)	440, 736
BaeGI	GKGCMC	1 cut(s)	134
BanII	GRGCYC	1 cut(s)	189
BbvI	GCAGC	1 cut(s)	112
BccI	CCATC	2 cut(s)	641, 928
BceAI	ACGGC	1 cut(s)	80
BciT130I	CCWGG	2 cut(s)	375, 960
BclI	TGATCA	1 cut(s)	889
BcnI	CCSGG	5 cut(s)	88, 134, 155, 190, 811
BcoDI	GTCTC	3 cut(s)	45, 119, 747
BfaI	CTAG	2 cut(s)	414, 486
BglII	AGATCT	1 cut(s)	323
BisI	GCNGC	2 cut(s)	93, 101
BlsI	GCNGC	2 cut(s)	94, 102
BmcAI	AGTACT	1 cut(s)	791
Bme1390I	CCNGG	7 cut(s)	88, 134, 155, 190, 375, 811, 960
Bme18I	GGWCC	2 cut(s)	440, 736
BmgBI	CACGTC	1 cut(s)	129
BmgT120I	GGNCC	2 cut(s)	440, 736
BmiI	GGNNCC	1 cut(s)	194
BmrFI	CCNGG	7 cut(s)	88, 134, 155, 190, 375, 811, 960
BmsI	GCATC	3 cut(s)	238, 409, 751
BmtI	GCTAGC	1 cut(s)	489
BpmI	CTGGAG	2 cut(s)	456, 771
BpuMI	CCSGG	5 cut(s)	88, 134, 155, 190, 811
BsaI	GGTCTC	1 cut(s)	747
BsaJI	CCNNGG	7 cut(s)	87, 154, 188, 201, 357, 498, 959
BsaXI	ACNNNNNCTCC	2 cut(s)	25, 55
Bsc4I	CCNNNNNNNGG	4 cut(s)	153, 202, 285, 816
Bse1I	ACTGG	4 cut(s)	439, 670, 754, 787
BseBI	CCWGG	2 cut(s)	375, 960
BseDI	CCNNGG	7 cut(s)	87, 154, 188, 201, 357, 498, 959
BseGI	GGATG	2 cut(s)	651, 930
BseLI	CCNNNNNNNGG	4 cut(s)	153, 202, 285, 816
BseMII	CTCAG	1 cut(s)	311
BseNI	ACTGG	4 cut(s)	439, 670, 754, 787
BseRI	GAGGAG	3 cut(s)	38, 50, 53
BseSI	GKGCMC	1 cut(s)	134
BseX3I	CGGCCG	1 cut(s)	93
BseXI	GCAGC	1 cut(s)	112
BsgI	GTGCAG	1 cut(s)	119
Bsh1285I	CGRYCG	1 cut(s)	96
BshFI	GGCC	2 cut(s)	95, 673
BsiEI	CGRYCG	1 cut(s)	96
BsiSI	CCGG	6 cut(s)	87, 134, 154, 190, 660, 810
BslI	CCNNNNNNNGG	4 cut(s)	153, 202, 285, 816
BsmAI	GTCTC	3 cut(s)	45, 119, 747
BsmBI	CGTCTC	1 cut(s)	119
BsnI	GGCC	2 cut(s)	95, 673
Bso31I	GGTCTC	1 cut(s)	747
Bsp1286I	GDGCHC	2 cut(s)	134, 189
Bsp1407I	TGTACA	1 cut(s)	648
Bsp143I	GATC	3 cut(s)	323, 832, 889
BspACI	CCGC	3 cut(s)	92, 622, 854
BspANI	GGCC	2 cut(s)	95, 673
BspCNI	CTCAG	1 cut(s)	312
BspHI	TCATGA	1 cut(s)	162
BspLI	GGNNCC	1 cut(s)	194
BspOI	GCTAGC	1 cut(s)	489
BspPI	GGATC	1 cut(s)	840
BspTNI	GGTCTC	1 cut(s)	747
BsrGI	TGTACA	1 cut(s)	648
BsrI	ACTGG	4 cut(s)	439, 670, 754, 787
BssECI	CCNNGG	7 cut(s)	87, 154, 188, 201, 357, 498, 959
BssMI	GATC	3 cut(s)	323, 832, 889
BssT1I	CCWWGG	1 cut(s)	357
Bst2UI	CCWGG	2 cut(s)	375, 960
BstAUI	TGTACA	1 cut(s)	648
BstC8I	GCNNGC	2 cut(s)	487, 671
BstDEI	CTNAG	1 cut(s)	320
BstF5I	GGATG	2 cut(s)	651, 930
BstHHI	GCGC	1 cut(s)	213
BstKTI	GATC	3 cut(s)	326, 835, 892
BstMAI	GTCTC	3 cut(s)	45, 119, 747
BstMBI	GATC	3 cut(s)	323, 832, 889
BstMCI	CGRYCG	1 cut(s)	96
BstMWI	GCNNNNNNNGC	1 cut(s)	952
BstNI	CCWGG	2 cut(s)	375, 960
BstSCI	CCNGG	7 cut(s)	86, 132, 153, 188, 373, 809, 958
BstSLI	GKGCMC	1 cut(s)	134
BstV1I	GCAGC	1 cut(s)	112
BstX2I	RGATCY	1 cut(s)	323
BstYI	RGATCY	1 cut(s)	323
BstZI	CGGCCG	1 cut(s)	93
BsuRI	GGCC	2 cut(s)	95, 673
BtrI	CACGTC	1 cut(s)	129
BtsCI	GGATG	2 cut(s)	651, 930
BtsI	GCAGTG	1 cut(s)	892
BtsIMutI	CAGTG	3 cut(s)	317, 663, 892
Cac8I	GCNNGC	2 cut(s)	487, 671
CaiI	CAGNNNCTG	1 cut(s)	680
CciI	TCATGA	1 cut(s)	162
CfoI	GCGC	1 cut(s)	213
Cfr13I	GGNCC	2 cut(s)	440, 736
Csp6I	GTAC	2 cut(s)	649, 790
CviAII	CATG	6 cut(s)	163, 208, 224, 280, 406, 637
CviQI	GTAC	2 cut(s)	649, 790
DdeI	CTNAG	1 cut(s)	320
DpnI	GATC	3 cut(s)	325, 834, 891
DpnII	GATC	3 cut(s)	323, 832, 889
EaeI	YGGCCR	1 cut(s)	93
EagI	CGGCCG	1 cut(s)	93
EclXI	CGGCCG	1 cut(s)	93
Eco130I	CCWWGG	1 cut(s)	357
Eco24I	GRGCYC	1 cut(s)	189
Eco31I	GGTCTC	1 cut(s)	747
Eco47I	GGWCC	2 cut(s)	440, 736
Eco52I	CGGCCG	1 cut(s)	93
EcoRI	GAATTC	1 cut(s)	826
EcoRII	CCWGG	2 cut(s)	373, 958
EcoT14I	CCWWGG	1 cut(s)	357
EcoT38I	GRGCYC	1 cut(s)	189
ErhI	CCWWGG	1 cut(s)	357
Esp3I	CGTCTC	1 cut(s)	119
FaeI	CATG	6 cut(s)	166, 211, 227, 283, 409, 640
FalI	AAGNNNNNCTT	2 cut(s)	341, 373
FatI	CATG	6 cut(s)	162, 207, 223, 279, 405, 636
FbaI	TGATCA	1 cut(s)	889
Fnu4HI	GCNGC	2 cut(s)	93, 101
FokI	GGATG	2 cut(s)	658, 937
FriOI	GRGCYC	1 cut(s)	189
Fsp4HI	GCNGC	2 cut(s)	93, 101
FspBI	CTAG	2 cut(s)	414, 486
GlaI	GCGC	1 cut(s)	212
GluI	GCNGC	2 cut(s)	93, 101
GsuI	CTGGAG	2 cut(s)	456, 771
HaeIII	GGCC	2 cut(s)	95, 673
HapII	CCGG	6 cut(s)	87, 134, 154, 190, 660, 810
HhaI	GCGC	1 cut(s)	213
Hin1II	CATG	6 cut(s)	166, 211, 227, 283, 409, 640
Hin6I	GCGC	1 cut(s)	211
HinP1I	GCGC	1 cut(s)	211
HinfI	GANTC	1 cut(s)	517
HpaII	CCGG	6 cut(s)	87, 134, 154, 190, 660, 810
HphI	GGTGA	1 cut(s)	950
Hpy166II	GTNNAC	2 cut(s)	76, 736
Hpy188I	TCNGA	8 cut(s)	124, 432, 502, 645, 701, 825, 832, 1016
Hpy188III	TCNNGA	2 cut(s)	163, 414
Hpy8I	GTNNAC	2 cut(s)	76, 736
Hpy99I	CGWCG	1 cut(s)	999
HpyAV	CCTTC	2 cut(s)	77, 163
HpyCH4IV	ACGT	1 cut(s)	128
HpyCH4V	TGCA	6 cut(s)	4, 100, 533, 590, 946, 981
HpyF10VI	GCNNNNNNNGC	1 cut(s)	952
HpyF3I	CTNAG	1 cut(s)	320
HpySE526I	ACGT	1 cut(s)	128
Hsp92II	CATG	6 cut(s)	166, 211, 227, 283, 409, 640
HspAI	GCGC	1 cut(s)	211
Ksp22I	TGATCA	1 cut(s)	889
Kzo9I	GATC	3 cut(s)	323, 832, 889
LmnI	GCTCC	1 cut(s)	192
Lsp1109I	GCAGC	1 cut(s)	112
LweI	GCATC	3 cut(s)	238, 409, 751
MaeI	CTAG	2 cut(s)	414, 486
MaeII	ACGT	1 cut(s)	128
MaeIII	GTNAC	4 cut(s)	258, 600, 745, 938
MalI	GATC	3 cut(s)	325, 834, 891
MboI	GATC	3 cut(s)	323, 832, 889
MboII	GAAGA	1 cut(s)	178
MflI	RGATCY	1 cut(s)	323
MhlI	GDGCHC	2 cut(s)	134, 189
MluCI	AATT	6 cut(s)	218, 313, 560, 826, 899, 976
MlyI	GAGTC	1 cut(s)	526
MmeI	TCCRAC	1 cut(s)	299
MseI	TTAA	3 cut(s)	237, 479, 873
MslI	CAYNNNNRTG	1 cut(s)	404
MspI	CCGG	6 cut(s)	87, 134, 154, 190, 660, 810
MspR9I	CCNGG	7 cut(s)	88, 134, 155, 190, 375, 811, 960
MvaI	CCWGG	2 cut(s)	375, 960
MwoI	GCNNNNNNNGC	1 cut(s)	952
NciI	CCSGG	5 cut(s)	88, 134, 155, 190, 811
NdeII	GATC	3 cut(s)	323, 832, 889
NheI	GCTAGC	1 cut(s)	485
NlaIII	CATG	6 cut(s)	166, 211, 227, 283, 409, 640
NlaIV	GGNNCC	1 cut(s)	194
NmeAIII	GCCGAG	1 cut(s)	540
NmuCI	GTSAC	3 cut(s)	600, 745, 938
PagI	TCATGA	1 cut(s)	162
PfoI	TCCNGGA	1 cut(s)	809
PkrI	GCNGC	2 cut(s)	94, 102
PleI	GAGTC	1 cut(s)	525
PpsI	GAGTC	1 cut(s)	525
Psp6I	CCWGG	2 cut(s)	373, 958
PspGI	CCWGG	2 cut(s)	373, 958
PspN4I	GGNNCC	1 cut(s)	194
PspPI	GGNCC	2 cut(s)	440, 736
PstNI	CAGNNNCTG	1 cut(s)	680
PsuI	RGATCY	1 cut(s)	323
RsaI	GTAC	2 cut(s)	650, 791
RsaNI	GTAC	2 cut(s)	649, 790
RseI	CAYNNNNRTG	1 cut(s)	404
SaqAI	TTAA	3 cut(s)	237, 479, 873
SatI	GCNGC	2 cut(s)	93, 101
Sau3AI	GATC	3 cut(s)	323, 832, 889
Sau96I	GGNCC	2 cut(s)	440, 736
ScaI	AGTACT	1 cut(s)	791
SchI	GAGTC	1 cut(s)	526
ScrFI	CCNGG	7 cut(s)	88, 134, 155, 190, 375, 811, 960
SduI	GDGCHC	2 cut(s)	134, 189
SfaNI	GCATC	3 cut(s)	238, 409, 751
SinI	GGWCC	2 cut(s)	440, 736
SmiMI	CAYNNNNRTG	1 cut(s)	404
Sse9I	AATT	6 cut(s)	218, 313, 560, 826, 899, 976
SsiI	CCGC	3 cut(s)	92, 622, 854
SspI	AATATT	1 cut(s)	777
SspMI	CTAG	2 cut(s)	414, 486
StyD4I	CCNGG	7 cut(s)	86, 132, 153, 188, 373, 809, 958
StyI	CCWWGG	1 cut(s)	357
TaiI	ACGT	1 cut(s)	131
TaqII	GACCGA	1 cut(s)	193
TasI	AATT	6 cut(s)	218, 313, 560, 826, 899, 976
TatI	WGTACW	2 cut(s)	648, 789
TauI	GCSGC	1 cut(s)	95
Tru1I	TTAA	3 cut(s)	237, 479, 873
Tru9I	TTAA	3 cut(s)	237, 479, 873
TscAI	CASTG	3 cut(s)	324, 670, 892
TseFI	GTSAC	3 cut(s)	600, 745, 938
TseI	GCWGC	1 cut(s)	100
Tsp45I	GTSAC	3 cut(s)	600, 745, 938
TspDTI	ATGAA	2 cut(s)	179, 357
TspRI	CASTG	3 cut(s)	324, 670, 892
VpaK11BI	GGWCC	2 cut(s)	440, 736
XapI	RAATTY	4 cut(s)	313, 560, 826, 899
XbaI	TCTAGA	1 cut(s)	413
XcmI	CCANNNNNNNNNTGG	2 cut(s)	662, 746
XspI	CTAG	2 cut(s)	414, 486
ZrmI	AGTACT	1 cut(s)	791

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.