Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0002664

Physical Location & Seq

Genomic Coordinates Forward (+)

6267085 .. 6268525

Gene Structure 1441 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g06160.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 984 bp

ATGTGTCCTCTCTTTTCACTCTTCATCCTACACATGATAACCGGCGCCACCGCGCAACTCCGCCACGGTTATTACTCGGAAACCTGCCCGAAAGCTAAATCCATTGTCCAGGATGTCATGAAGGTGGCTTTGATTCGAGAGCCACGGAGTCTTGCTTCGATCATGCGTTTACAGTTCCATGATTGCTTTGTCAATGGTTGTGATGCTTCATTGTTGCTTGATGACACACCAACCATGCTAGGAGAAAAACTAGCCCTTGCAAATATTAATTCACTGAGATCTTATGAAGTTGTTGACCAAGTGAAAGAAGCCTTGGAGAAGGTGTGTCCGGGAGTTGTTTCTTGCGCAGACATTATAATCATGGCGTCTAGAGATGCTGTTTCTCTGACAGGGGGGCCTTACTGGGAAGTGAAGTTGGGAAGATTGGATAGCTTAACAGCAAGAAAAGAAGACTCAGACAACGTTATGCCAAGTCCAAGATCCAATGCGACATTCCTCATTGGCCTGTTTGCCAAATTTAATCTCTCTGTCAAGGACCTTGTTGCGCTTTCGGGGTCACACTCTATTGGCAAAGCTCGGTGCTTTTCCATCATGTTTCGGCTGTACAATCAATCCGGCAGTGGCCGGCCAGACCCTGCCATTGATCCAAAGTTTAGACAAAAGCTAGACAAGCTTTGCCCATTAAACGTGGACCAAAACATTACCGGAGACCTTGATGCTACGCCTGTAAAGTTTGATAACCAGTACTTCAGGGACTTGGTTGCCGGAAGAGGGTTTCTGAACTCGGATCAAACGCTTTTCACGTTTCCGGAGACGAGGGAATTTGTGAAGCAGTTCAGCATTGATCAAGGTGAATTTTTCAAGGCTTTTGTGAAGGGCATGATAAAGATGGCTGACTTGACGGTGGATCAGCCTGGGGAAGTAAGAAAAAATTGCAGGGTGGTTAATAGTCATTCTTCTAAATTTCCAATGCATCCTAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006725 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009505 GO:0009698 GO:0009699 GO:0009791 GO:0009808 GO:0009809 GO:0009987 GO:0010228 GO:0019438 GO:0019748 GO:0022414 GO:0030312 GO:0032501 GO:0032502 GO:0044237 GO:0044249 GO:0044424 GO:0044444 GO:0044464 GO:0044550 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0071944 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

peroxidase

Protein Analysis

328

Amino Acids

36.38

Weight (kDa)

8.31

Isoelectric Point (pI)

32.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002664)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22420
fragaria_vesca	FvH4_1g20350 FvH4_1g20360 FvH4_1g20360
malus_domestica	MD01G1034400.v1.1 MD01G1034500.v1.1 MD01G1034900.v1.1 MD15G1321200.v1.1 MD15G1321300.v1.1 MD15G1321400.v1.1
prunus_persica	Prupe.6G191800_v2.0.a1 Prupe.6G191900_v2.0.a1 Prupe.6G192000_v2.0.a1
pyrus_communis	pycom01g06150 pycom01g06160 pycom01g06190 pycom15g28200 pycom15g28210
rosa_chinensis	RchiOBHm_Chr2g0112481 RchiOBHm_Chr2g0112491
rosa_laevigata	RLG00000017984 RLG00000017985
rosa_multiflora	Rmu_co8298115.1_g000001 Rmu_co8310909.1_g000001 Rmu_sc0013522.1_g000001 Rmu_sc0026466.1_g000001
rosa_roxburghii	Rroxscaffold_2G00131380 Rroxscaffold_2G00131390
rosa_rugosa	Rorug02G0181300 Rorug02G0181300
rosa_samantha	Rh2AG234300 Rh2AG234400 Rh2BG247900 Rh2BG248000 Rh2CG238900 Rh2CG239000 Rh2DG241900 Rh2DG242000
rosa_wichuraiana	Rw2G018150 Rw2G018160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	356
Acc16I	TGCGCA	1 cut(s)	346
Acc36I	ACCTGC	1 cut(s)	92
AccB1I	GGYRCC	1 cut(s)	44
AccII	CGCG	1 cut(s)	53
AccIII	TCCGGA	1 cut(s)	808
AciI	CCGC	2 cut(s)	51, 61
AclI	AACGTT	1 cut(s)	462
AclWI	GGATC	4 cut(s)	474, 638, 795, 915
AcoI	YGGCCR	2 cut(s)	622, 626
AcsI	RAATTY	4 cut(s)	515, 821, 854, 962
AcuI	CTGAAG	1 cut(s)	733
AcyI	GRCGYC	2 cut(s)	45, 365
AfaI	GTAC	2 cut(s)	605, 746
AfiI	CCNNNNNNNGG	1 cut(s)	771
AgsI	TTSAA	1 cut(s)	862
AjnI	CCWGG	2 cut(s)	108, 913
AjuI	GAANNNNNNNTTGG	4 cut(s)	296, 328, 476, 508
AluBI	AGCT	6 cut(s)	95, 432, 575, 664, 673, 981
AluI	AGCT	6 cut(s)	95, 432, 575, 664, 673, 981
Alw26I	GTCTC	2 cut(s)	702, 806
AlwI	GGATC	4 cut(s)	474, 638, 795, 915
AlwNI	CAGNNNCTG	1 cut(s)	635
Aor13HI	TCCGGA	1 cut(s)	808
AoxI	GGCC	4 cut(s)	395, 502, 622, 626
ApoI	RAATTY	4 cut(s)	515, 821, 854, 962
AseI	ATTAAT	1 cut(s)	267
Asp700I	GAANNNNTTC	1 cut(s)	833
AspLEI	GCGC	4 cut(s)	47, 55, 347, 547
AspS9I	GGNCC	3 cut(s)	395, 535, 691
AsuC2I	CCSGG	1 cut(s)	330
AsuHPI	GGTGA	1 cut(s)	863
AvaII	GGWCC	2 cut(s)	535, 691
BanI	GGYRCC	1 cut(s)	44
BbsI	GAAGAC	1 cut(s)	456
BccI	CCATC	2 cut(s)	596, 883
BciT130I	CCWGG	2 cut(s)	110, 915
BclI	TGATCA	1 cut(s)	844
BcnI	CCSGG	1 cut(s)	330
BcoDI	GTCTC	2 cut(s)	702, 806
BfaI	CTAG	6 cut(s)	239, 251, 369, 665, 978, 982
BfoI	RGCGCY	1 cut(s)	48
BfuAI	ACCTGC	1 cut(s)	92
BglII	AGATCT	1 cut(s)	278
BmcAI	AGTACT	1 cut(s)	746
Bme1390I	CCNGG	3 cut(s)	110, 330, 915
Bme18I	GGWCC	2 cut(s)	535, 691
BmgT120I	GGNCC	3 cut(s)	395, 535, 691
BmiI	GGNNCC	2 cut(s)	46, 396
BmrFI	CCNGG	3 cut(s)	110, 330, 915
BmrI	ACTGGG	1 cut(s)	412
BmsI	GCATC	3 cut(s)	193, 364, 706
BmuI	ACTGGG	1 cut(s)	412
BpiI	GAAGAC	1 cut(s)	456
BpuMI	CCSGG	1 cut(s)	330
BsaHI	GRCGYC	2 cut(s)	45, 365
BsaI	GGTCTC	1 cut(s)	702
BsaJI	CCNNGG	4 cut(s)	64, 143, 312, 914
BsaWI	WCCGGW	2 cut(s)	704, 808
BsaXI	ACNNNNNCTCC	2 cut(s)	308, 338
Bsc4I	CCNNNNNNNGG	1 cut(s)	771
Bse118I	RCCGGY	2 cut(s)	41, 624
Bse1I	ACTGG	2 cut(s)	407, 742
BseAI	TCCGGA	1 cut(s)	808
BseBI	CCWGG	2 cut(s)	110, 915
BseDI	CCNNGG	4 cut(s)	64, 143, 312, 914
BseGI	GGATG	3 cut(s)	24, 118, 973
BseLI	CCNNNNNNNGG	1 cut(s)	771
BseMII	CTCAG	2 cut(s)	266, 468
BseNI	ACTGG	2 cut(s)	407, 742
Bsh1236I	CGCG	1 cut(s)	53
BshFI	GGCC	4 cut(s)	397, 504, 624, 628
BshNI	GGYRCC	1 cut(s)	44
BsiSI	CCGG	7 cut(s)	42, 329, 615, 625, 705, 765, 809
BslFI	GGGAC	1 cut(s)	767
BslI	CCNNNNNNNGG	1 cut(s)	771
BsmAI	GTCTC	2 cut(s)	702, 806
BsmBI	CGTCTC	1 cut(s)	806
BsmFI	GGGAC	1 cut(s)	767
BsnI	GGCC	4 cut(s)	397, 504, 624, 628
Bso31I	GGTCTC	1 cut(s)	702
Bsp13I	TCCGGA	1 cut(s)	808
Bsp1407I	TGTACA	1 cut(s)	603
Bsp143I	GATC	7 cut(s)	159, 278, 479, 643, 787, 844, 907
BspACI	CCGC	2 cut(s)	51, 61
BspANI	GGCC	4 cut(s)	397, 504, 624, 628
BspCNI	CTCAG	2 cut(s)	267, 467
BspEI	TCCGGA	1 cut(s)	808
BspFNI	CGCG	1 cut(s)	53
BspHI	TCATGA	1 cut(s)	117
BspLI	GGNNCC	2 cut(s)	46, 396
BspMI	ACCTGC	1 cut(s)	92
BspPI	GGATC	4 cut(s)	474, 638, 795, 915
BspT107I	GGYRCC	1 cut(s)	44
BspTNI	GGTCTC	1 cut(s)	702
BsrFI	RCCGGY	2 cut(s)	41, 624
BsrGI	TGTACA	1 cut(s)	603
BsrI	ACTGG	2 cut(s)	407, 742
BssAI	RCCGGY	2 cut(s)	41, 624
BssECI	CCNNGG	4 cut(s)	64, 143, 312, 914
BssMI	GATC	7 cut(s)	159, 278, 479, 643, 787, 844, 907
BssNI	GRCGYC	2 cut(s)	45, 365
BssT1I	CCWWGG	1 cut(s)	312
Bst2UI	CCWGG	2 cut(s)	110, 915
Bst4CI	ACNGT	3 cut(s)	68, 174, 904
Bst6I	CTCTTC	2 cut(s)	26, 763
BstACI	GRCGYC	2 cut(s)	45, 365
BstAUI	TGTACA	1 cut(s)	603
BstC8I	GCNNGC	1 cut(s)	626
BstDEI	CTNAG	2 cut(s)	275, 454
BstDSI	CCRYGG	2 cut(s)	64, 143
BstF5I	GGATG	3 cut(s)	24, 118, 973
BstFNI	CGCG	1 cut(s)	53
BstH2I	RGCGCY	1 cut(s)	48
BstHHI	GCGC	4 cut(s)	47, 55, 347, 547
BstKTI	GATC	7 cut(s)	162, 281, 482, 646, 790, 847, 910
BstMAI	GTCTC	2 cut(s)	702, 806
BstMBI	GATC	7 cut(s)	159, 278, 479, 643, 787, 844, 907
BstMWI	GCNNNNNNNGC	1 cut(s)	670
BstNI	CCWGG	2 cut(s)	110, 915
BstSCI	CCNGG	3 cut(s)	108, 328, 913
BstUI	CGCG	1 cut(s)	53
BstV2I	GAAGAC	1 cut(s)	456
BstX2I	RGATCY	2 cut(s)	278, 479
BstYI	RGATCY	2 cut(s)	278, 479
BsuRI	GGCC	4 cut(s)	397, 504, 624, 628
BtgI	CCRYGG	2 cut(s)	64, 143
BtsCI	GGATG	3 cut(s)	24, 118, 973
BtsI	GCAGTG	1 cut(s)	625
BtsIMutI	CAGTG	2 cut(s)	272, 625
BveI	ACCTGC	1 cut(s)	92
Cac8I	GCNNGC	1 cut(s)	626
CaiI	CAGNNNCTG	1 cut(s)	635
CciI	TCATGA	1 cut(s)	117
CfoI	GCGC	4 cut(s)	47, 55, 347, 547
Cfr10I	RCCGGY	2 cut(s)	41, 624
Cfr13I	GGNCC	3 cut(s)	395, 535, 691
CseI	GACGC	1 cut(s)	354
Csp6I	GTAC	2 cut(s)	604, 745
CviAII	CATG	8 cut(s)	34, 118, 163, 179, 235, 361, 592, 880
CviQI	GTAC	2 cut(s)	604, 745
DdeI	CTNAG	2 cut(s)	275, 454
DinI	GGCGCC	1 cut(s)	46
DpnI	GATC	7 cut(s)	161, 280, 481, 645, 789, 846, 909
DpnII	GATC	7 cut(s)	159, 278, 479, 643, 787, 844, 907
EaeI	YGGCCR	2 cut(s)	622, 626
Eam1104I	CTCTTC	2 cut(s)	26, 763
EarI	CTCTTC	2 cut(s)	26, 763
EciI	GGCGGA	1 cut(s)	50
Eco130I	CCWWGG	1 cut(s)	312
Eco31I	GGTCTC	1 cut(s)	702
Eco47I	GGWCC	2 cut(s)	535, 691
Eco57I	CTGAAG	1 cut(s)	733
EcoO109I	RGGNCCY	2 cut(s)	395, 535
EcoRII	CCWGG	2 cut(s)	108, 913
EcoT14I	CCWWGG	1 cut(s)	312
EcoT22I	ATGCAT	1 cut(s)	975
EgeI	GGCGCC	1 cut(s)	46
EheI	GGCGCC	1 cut(s)	46
ErhI	CCWWGG	1 cut(s)	312
Esp3I	CGTCTC	1 cut(s)	806
FaeI	CATG	8 cut(s)	37, 121, 166, 182, 238, 364, 595, 883
FaqI	GGGAC	1 cut(s)	767
FatI	CATG	8 cut(s)	33, 117, 162, 178, 234, 360, 591, 879
FbaI	TGATCA	1 cut(s)	844
FokI	GGATG	3 cut(s)	11, 125, 960
FseI	GGCCGGCC	1 cut(s)	628
FspBI	CTAG	6 cut(s)	239, 251, 369, 665, 978, 982
FspI	TGCGCA	1 cut(s)	346
GlaI	GCGC	4 cut(s)	46, 54, 346, 546
HaeII	RGCGCY	1 cut(s)	48
HaeIII	GGCC	4 cut(s)	397, 504, 624, 628
HapII	CCGG	7 cut(s)	42, 329, 615, 625, 705, 765, 809
HgaI	GACGC	1 cut(s)	354
HhaI	GCGC	4 cut(s)	47, 55, 347, 547
Hin1I	GRCGYC	2 cut(s)	45, 365
Hin1II	CATG	8 cut(s)	37, 121, 166, 182, 238, 364, 595, 883
Hin6I	GCGC	4 cut(s)	45, 53, 345, 545
HinP1I	GCGC	4 cut(s)	45, 53, 345, 545
HincII	GTYRAC	1 cut(s)	295
HindII	GTYRAC	1 cut(s)	295
HindIII	AAGCTT	1 cut(s)	671
HinfI	GANTC	3 cut(s)	133, 148, 452
HpaII	CCGG	7 cut(s)	42, 329, 615, 625, 705, 765, 809
HphI	GGTGA	1 cut(s)	863
Hpy166II	GTNNAC	3 cut(s)	170, 295, 691
Hpy188I	TCNGA	5 cut(s)	79, 387, 457, 780, 787
Hpy188III	TCNNGA	4 cut(s)	118, 137, 369, 809
Hpy8I	GTNNAC	3 cut(s)	170, 295, 691
HpyAV	CCTTC	3 cut(s)	115, 313, 868
HpyCH4III	ACNGT	3 cut(s)	68, 174, 904
HpyCH4IV	ACGT	3 cut(s)	462, 687, 803
HpyCH4V	TGCA	3 cut(s)	260, 936, 973
HpyF10VI	GCNNNNNNNGC	1 cut(s)	670
HpyF3I	CTNAG	2 cut(s)	275, 454
HpySE526I	ACGT	3 cut(s)	462, 687, 803
Hsp92I	GRCGYC	2 cut(s)	45, 365
Hsp92II	CATG	8 cut(s)	37, 121, 166, 182, 238, 364, 595, 883
HspAI	GCGC	4 cut(s)	45, 53, 345, 545
KasI	GGCGCC	1 cut(s)	44
Kpn2I	TCCGGA	1 cut(s)	808
KroI	GCCGGC	1 cut(s)	624
KroNI	GCCGGC	1 cut(s)	626
Ksp22I	TGATCA	1 cut(s)	844
Kzo9I	GATC	7 cut(s)	159, 278, 479, 643, 787, 844, 907
LweI	GCATC	3 cut(s)	193, 364, 706
MaeI	CTAG	6 cut(s)	239, 251, 369, 665, 978, 982
MaeII	ACGT	3 cut(s)	462, 687, 803
MaeIII	GTNAC	1 cut(s)	555
MalI	GATC	7 cut(s)	161, 280, 481, 645, 789, 846, 909
MboI	GATC	7 cut(s)	159, 278, 479, 643, 787, 844, 907
MboII	GAAGA	5 cut(s)	13, 432, 461, 780, 948
MflI	RGATCY	2 cut(s)	278, 479
MluCI	AATT	6 cut(s)	268, 515, 821, 854, 931, 962
Mly113I	GGCGCC	1 cut(s)	45
MlyI	GAGTC	2 cut(s)	157, 446
MnlI	CCTC	4 cut(s)	18, 506, 764, 810
Mph1103I	ATGCAT	1 cut(s)	975
MroI	TCCGGA	1 cut(s)	808
MroNI	GCCGGC	1 cut(s)	624
MroXI	GAANNNNTTC	1 cut(s)	833
MseI	TTAA	5 cut(s)	267, 434, 519, 683, 945
MslI	CAYNNNNRTG	1 cut(s)	122
MspI	CCGG	7 cut(s)	42, 329, 615, 625, 705, 765, 809
MspR9I	CCNGG	3 cut(s)	110, 330, 915
MvaI	CCWGG	2 cut(s)	110, 915
MvnI	CGCG	1 cut(s)	53
MwoI	GCNNNNNNNGC	1 cut(s)	670
NaeI	GCCGGC	1 cut(s)	626
NarI	GGCGCC	1 cut(s)	45
NciI	CCSGG	1 cut(s)	330
NdeII	GATC	7 cut(s)	159, 278, 479, 643, 787, 844, 907
NgoMIV	GCCGGC	1 cut(s)	624
NlaIII	CATG	8 cut(s)	37, 121, 166, 182, 238, 364, 595, 883
NlaIV	GGNNCC	2 cut(s)	46, 396
NmuCI	GTSAC	1 cut(s)	555
NsbI	TGCGCA	1 cut(s)	346
NsiI	ATGCAT	1 cut(s)	975
PagI	TCATGA	1 cut(s)	117
PcsI	WCGNNNNNNNCGW	1 cut(s)	800
PdiI	GCCGGC	1 cut(s)	626
PdmI	GAANNNNTTC	1 cut(s)	833
PfeI	GAWTC	1 cut(s)	133
PfoI	TCCNGGA	2 cut(s)	108, 328
PleI	GAGTC	2 cut(s)	156, 446
PluTI	GGCGCC	1 cut(s)	48
PpsI	GAGTC	2 cut(s)	156, 446
PpuMI	RGGWCCY	1 cut(s)	535
PshBI	ATTAAT	1 cut(s)	267
PsiI	TTATAA	1 cut(s)	356
Psp1406I	AACGTT	1 cut(s)	462
Psp5II	RGGWCCY	1 cut(s)	535
Psp6I	CCWGG	2 cut(s)	108, 913
PspGI	CCWGG	2 cut(s)	108, 913
PspN4I	GGNNCC	2 cut(s)	46, 396
PspPI	GGNCC	3 cut(s)	395, 535, 691
PspPPI	RGGWCCY	1 cut(s)	535
PstNI	CAGNNNCTG	1 cut(s)	635
PsuI	RGATCY	2 cut(s)	278, 479
RigI	GGCCGGCC	1 cut(s)	628
RsaI	GTAC	2 cut(s)	605, 746
RsaNI	GTAC	2 cut(s)	604, 745
RseI	CAYNNNNRTG	1 cut(s)	122
SaqAI	TTAA	5 cut(s)	267, 434, 519, 683, 945
Sau3AI	GATC	7 cut(s)	159, 278, 479, 643, 787, 844, 907
Sau96I	GGNCC	3 cut(s)	395, 535, 691
ScaI	AGTACT	1 cut(s)	746
SchI	GAGTC	2 cut(s)	157, 446
ScrFI	CCNGG	3 cut(s)	110, 330, 915
SfaNI	GCATC	3 cut(s)	193, 364, 706
SfoI	GGCGCC	1 cut(s)	46
SinI	GGWCC	2 cut(s)	535, 691
SmiMI	CAYNNNNRTG	1 cut(s)	122
Sse9I	AATT	6 cut(s)	268, 515, 821, 854, 931, 962
SsiI	CCGC	2 cut(s)	51, 61
SspDI	GGCGCC	1 cut(s)	44
SspI	AATATT	1 cut(s)	265
SspMI	CTAG	6 cut(s)	239, 251, 369, 665, 978, 982
StyD4I	CCNGG	3 cut(s)	108, 328, 913
StyI	CCWWGG	1 cut(s)	312
TaaI	ACNGT	3 cut(s)	68, 174, 904
TaiI	ACGT	3 cut(s)	465, 690, 806
TaqI	TCGA	2 cut(s)	136, 158
TasI	AATT	6 cut(s)	268, 515, 821, 854, 931, 962
TatI	WGTACW	2 cut(s)	603, 744
TfiI	GAWTC	1 cut(s)	133
Tru1I	TTAA	5 cut(s)	267, 434, 519, 683, 945
Tru9I	TTAA	5 cut(s)	267, 434, 519, 683, 945
TscAI	CASTG	2 cut(s)	279, 625
TseFI	GTSAC	1 cut(s)	555
Tsp45I	GTSAC	1 cut(s)	555
TspDTI	ATGAA	4 cut(s)	13, 134, 198, 300
TspGWI	ACGGA	1 cut(s)	160
TspRI	CASTG	2 cut(s)	279, 625
VpaK11BI	GGWCC	2 cut(s)	535, 691
VspI	ATTAAT	1 cut(s)	267
XapI	RAATTY	4 cut(s)	515, 821, 854, 962
XbaI	TCTAGA	1 cut(s)	368
XmnI	GAANNNNTTC	1 cut(s)	833
XspI	CTAG	6 cut(s)	239, 251, 369, 665, 978, 982
ZrmI	AGTACT	1 cut(s)	746
Zsp2I	ATGCAT	1 cut(s)	975

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.