Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0002664

Physical Location & Seq

Genomic Coordinates Forward (+)

68000295 .. 68001764

Gene Structure 1470 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00131390.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 966 bp

ATGTCTCCTCTCTTGTTCATCTTCCTCCTACACATAATAACCGGTGCGGCCACACACCTCCGGACGGGTTATTACTCGGGAGTGTGTCCAAAAGCCGAATACATCGTCCGAGATGTCATGAGGAGGGCTTTGATGAGAGAACCCCGGAGCCTCGCCTCAGTCATGCGACTCCAATTTCACGATTGCTTTGTTAATGGTTGTGATGCTTCATTGTTACTTGATGACACACCAACCATGCTCGGAGAGAAACTCGCCCTTTCAAATATAAATTCATTGAGATCTTATGAAGTTGTTGATGAAGCCAAGGAAGCCTTGGAGAATGTCTGTCCTGGAGTTGTTTCATGCGCGGATATCATAATCATGGCTTCTAGAGATGCTGTTGCCCTGACTGGAGGACCAGATTGGGAAGTGAAGTTGGGAAGATTGGATAGCTTAACAGCAAGCCAAGAAGCCTCAGACAATGTGATGCCAAGTCCAAGATCTAATGCAACCTTTCTCATTGATCTATTCAGCAAATTCAATCTTTCTGTCAAAGACATGGTTGCACTTTCTGGATCACACTCCATTGGCAAAGCTCGGTGCTTTTCCATCATGTTTCGCCTTTACAACCAATCCGGCACTGGCAGGCCGGATCCTGCCATTGAACCCAAGTTTAGAGAAAAGCTAGACAAGCTTTGCCCTTTGAATGTGGACCAAAACGTGACCGGTGACCTTGATGCAACATCAGTGCTATTTGATAATCAGTACTTCAAGGACTTGGTTTCCGGCAGAGGGTTCCTGAATTCGGATCAAACACTTTACACATTTCCACAGACTAGGGGATTTGTGAGGCAGTTTAGTATAGACCAAGGAACCTTTTTCAAGGCCTTTGTTGAGGGAATGATAAAATTGGGTGACTTGCAGATCCAGCAACCTGGGGAGGTGAGAAGGAATTGTAGGGTGGTCAATGCATTGGGGAAGTCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006725 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009505 GO:0009698 GO:0009699 GO:0009791 GO:0009808 GO:0009809 GO:0009987 GO:0010228 GO:0019438 GO:0019748 GO:0022414 GO:0030312 GO:0032501 GO:0032502 GO:0044237 GO:0044249 GO:0044424 GO:0044444 GO:0044464 GO:0044550 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0071944 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

peroxidase

Protein Analysis

321

Amino Acids

35.56

Weight (kDa)

6.44

Isoelectric Point (pI)

33.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
peroxidase	PF00141	36 - 280	4.4e-75	Peroxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002664)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22420
fragaria_vesca	FvH4_1g20350 FvH4_1g20360 FvH4_1g20360
malus_domestica	MD01G1034400.v1.1 MD01G1034500.v1.1 MD01G1034900.v1.1 MD15G1321200.v1.1 MD15G1321300.v1.1 MD15G1321400.v1.1
prunus_persica	Prupe.6G191800_v2.0.a1 Prupe.6G191900_v2.0.a1 Prupe.6G192000_v2.0.a1
pyrus_communis	pycom01g06150 pycom01g06160 pycom01g06190 pycom15g28200 pycom15g28210
rosa_chinensis	RchiOBHm_Chr2g0112481 RchiOBHm_Chr2g0112491
rosa_laevigata	RLG00000017984 RLG00000017985
rosa_multiflora	Rmu_co8298115.1_g000001 Rmu_co8310909.1_g000001 Rmu_sc0013522.1_g000001 Rmu_sc0026466.1_g000001
rosa_roxburghii	Rroxscaffold_2G00131380 Rroxscaffold_2G00131390
rosa_rugosa	Rorug02G0181300 Rorug02G0181300
rosa_samantha	Rh2AG234300 Rh2AG234400 Rh2BG247900 Rh2BG248000 Rh2CG238900 Rh2CG239000 Rh2DG241900 Rh2DG242000
rosa_wichuraiana	Rw2G018150 Rw2G018160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	347
AccIII	TCCGGA	1 cut(s)	60
AciI	CCGC	2 cut(s)	47, 347
AclWI	GGATC	5 cut(s)	562, 626, 639, 795, 898
AcoI	YGGCCR	1 cut(s)	48
AcsI	RAATTY	3 cut(s)	268, 515, 781
AfaI	GTAC	1 cut(s)	746
AfiI	CCNNNNNNNGG	3 cut(s)	64, 771, 784
AgeI	ACCGGT	2 cut(s)	41, 704
AgsI	TTSAA	6 cut(s)	261, 520, 644, 685, 751, 862
AjnI	CCWGG	2 cut(s)	328, 913
AluBI	AGCT	4 cut(s)	432, 575, 664, 673
AluI	AGCT	4 cut(s)	432, 575, 664, 673
Alw26I	GTCTC	1 cut(s)	9
AlwI	GGATC	5 cut(s)	562, 626, 639, 795, 898
Ama87I	CYCGRG	1 cut(s)	76
Aor13HI	TCCGGA	1 cut(s)	60
AoxI	GGCC	3 cut(s)	48, 626, 864
ApoI	RAATTY	3 cut(s)	268, 515, 781
ArsI	GACNNNNNNTTYG	2 cut(s)	90, 122
AsiGI	ACCGGT	2 cut(s)	41, 704
AspLEI	GCGC	1 cut(s)	347
AspS9I	GGNCC	2 cut(s)	395, 691
AsuC2I	CCSGG	1 cut(s)	145
AsuHPI	GGTGA	3 cut(s)	719, 905, 934
AvaI	CYCGRG	1 cut(s)	76
AvaII	GGWCC	2 cut(s)	395, 691
BamHI	GGATCC	1 cut(s)	631
BccI	CCATC	1 cut(s)	596
BciT130I	CCWGG	2 cut(s)	330, 915
BcnI	CCSGG	1 cut(s)	145
BcoDI	GTCTC	1 cut(s)	9
BfaI	CTAG	4 cut(s)	369, 665, 816, 964
BglII	AGATCT	2 cut(s)	278, 479
BisI	GCNGC	1 cut(s)	48
BlsI	GCNGC	1 cut(s)	49
BmcAI	AGTACT	1 cut(s)	746
Bme1390I	CCNGG	3 cut(s)	145, 330, 915
Bme18I	GGWCC	2 cut(s)	395, 691
BmeT110I	CYCGRG	1 cut(s)	76
BmgT120I	GGNCC	2 cut(s)	395, 691
BmiI	GGNNCC	4 cut(s)	149, 633, 776, 853
BmrFI	CCNGG	3 cut(s)	145, 330, 915
BmsI	GCATC	4 cut(s)	193, 364, 456, 706
BplI	GAGNNNNNCTC	2 cut(s)	234, 266
BpmI	CTGGAG	2 cut(s)	351, 411
BpuMI	CCSGG	1 cut(s)	145
BsaJI	CCNNGG	5 cut(s)	143, 303, 312, 847, 914
BsaWI	WCCGGW	3 cut(s)	41, 60, 704
Bsc4I	CCNNNNNNNGG	3 cut(s)	64, 771, 784
Bse118I	RCCGGY	2 cut(s)	41, 704
Bse1I	ACTGG	2 cut(s)	394, 625
BseAI	TCCGGA	1 cut(s)	60
BseBI	CCWGG	2 cut(s)	330, 915
BseDI	CCNNGG	5 cut(s)	143, 303, 312, 847, 914
BseLI	CCNNNNNNNGG	3 cut(s)	64, 771, 784
BseMII	CTCAG	2 cut(s)	171, 468
BseNI	ACTGG	2 cut(s)	394, 625
BseRI	GAGGAG	1 cut(s)	136
Bsh1236I	CGCG	1 cut(s)	347
BshFI	GGCC	3 cut(s)	50, 628, 866
BshTI	ACCGGT	2 cut(s)	41, 704
BsiHKCI	CYCGRG	1 cut(s)	76
BsiSI	CCGG	7 cut(s)	42, 61, 145, 615, 629, 705, 765
BslI	CCNNNNNNNGG	3 cut(s)	64, 771, 784
BsmAI	GTCTC	1 cut(s)	9
BsnI	GGCC	3 cut(s)	50, 628, 866
BsoBI	CYCGRG	1 cut(s)	76
Bsp13I	TCCGGA	1 cut(s)	60
Bsp143I	GATC	7 cut(s)	278, 479, 502, 554, 631, 787, 903
BspACI	CCGC	2 cut(s)	47, 347
BspANI	GGCC	3 cut(s)	50, 628, 866
BspCNI	CTCAG	2 cut(s)	170, 467
BspEI	TCCGGA	1 cut(s)	60
BspFNI	CGCG	1 cut(s)	347
BspHI	TCATGA	1 cut(s)	117
BspLI	GGNNCC	4 cut(s)	149, 633, 776, 853
BspPI	GGATC	5 cut(s)	562, 626, 639, 795, 898
BsrFI	RCCGGY	2 cut(s)	41, 704
BsrI	ACTGG	2 cut(s)	394, 625
BssAI	RCCGGY	2 cut(s)	41, 704
BssECI	CCNNGG	5 cut(s)	143, 303, 312, 847, 914
BssMI	GATC	7 cut(s)	278, 479, 502, 554, 631, 787, 903
BssT1I	CCWWGG	3 cut(s)	303, 312, 847
Bst2UI	CCWGG	2 cut(s)	330, 915
BstC8I	GCNNGC	2 cut(s)	442, 626
BstDEI	CTNAG	2 cut(s)	157, 454
BstEII	GGTNACC	1 cut(s)	707
BstFNI	CGCG	1 cut(s)	347
BstHHI	GCGC	1 cut(s)	347
BstKTI	GATC	7 cut(s)	281, 482, 505, 557, 634, 790, 906
BstMAI	GTCTC	1 cut(s)	9
BstMBI	GATC	7 cut(s)	278, 479, 502, 554, 631, 787, 903
BstMWI	GCNNNNNNNGC	3 cut(s)	308, 670, 907
BstNI	CCWGG	2 cut(s)	330, 915
BstPI	GGTNACC	1 cut(s)	707
BstSCI	CCNGG	3 cut(s)	143, 328, 913
BstUI	CGCG	1 cut(s)	347
BstX2I	RGATCY	4 cut(s)	278, 479, 631, 903
BstXI	CCANNNNNNTGG	1 cut(s)	914
BstYI	RGATCY	4 cut(s)	278, 479, 631, 903
BsuRI	GGCC	3 cut(s)	50, 628, 866
BtsIMutI	CAGTG	2 cut(s)	618, 732
Cac8I	GCNNGC	2 cut(s)	442, 626
CciI	TCATGA	1 cut(s)	117
CfoI	GCGC	1 cut(s)	347
Cfr10I	RCCGGY	2 cut(s)	41, 704
Cfr13I	GGNCC	2 cut(s)	395, 691
Csp6I	GTAC	1 cut(s)	745
CspAI	ACCGGT	2 cut(s)	41, 704
CviAII	CATG	7 cut(s)	118, 163, 235, 342, 361, 538, 592
CviQI	GTAC	1 cut(s)	745
DdeI	CTNAG	2 cut(s)	157, 454
DpnI	GATC	7 cut(s)	280, 481, 504, 556, 633, 789, 905
DpnII	GATC	7 cut(s)	278, 479, 502, 554, 631, 787, 903
EaeI	YGGCCR	1 cut(s)	48
Eco130I	CCWWGG	3 cut(s)	303, 312, 847
Eco147I	AGGCCT	1 cut(s)	866
Eco32I	GATATC	1 cut(s)	352
Eco47I	GGWCC	2 cut(s)	395, 691
Eco88I	CYCGRG	1 cut(s)	76
Eco91I	GGTNACC	1 cut(s)	707
EcoO65I	GGTNACC	1 cut(s)	707
EcoRI	GAATTC	1 cut(s)	781
EcoRII	CCWGG	2 cut(s)	328, 913
EcoRV	GATATC	1 cut(s)	352
EcoT14I	CCWWGG	3 cut(s)	303, 312, 847
EcoT22I	ATGCAT	1 cut(s)	952
ErhI	CCWWGG	3 cut(s)	303, 312, 847
FaeI	CATG	7 cut(s)	121, 166, 238, 345, 364, 541, 595
FalI	AAGNNNNNCTT	2 cut(s)	296, 328
FatI	CATG	7 cut(s)	117, 162, 234, 341, 360, 537, 591
Fnu4HI	GCNGC	1 cut(s)	48
Fsp4HI	GCNGC	1 cut(s)	48
FspBI	CTAG	4 cut(s)	369, 665, 816, 964
GlaI	GCGC	1 cut(s)	346
GluI	GCNGC	1 cut(s)	48
GsuI	CTGGAG	2 cut(s)	351, 411
HaeIII	GGCC	3 cut(s)	50, 628, 866
HapII	CCGG	7 cut(s)	42, 61, 145, 615, 629, 705, 765
HhaI	GCGC	1 cut(s)	347
Hin1II	CATG	7 cut(s)	121, 166, 238, 345, 364, 541, 595
Hin6I	GCGC	1 cut(s)	345
HinP1I	GCGC	1 cut(s)	345
HindIII	AAGCTT	1 cut(s)	671
HinfI	GANTC	1 cut(s)	168
HpaII	CCGG	7 cut(s)	42, 61, 145, 615, 629, 705, 765
HphI	GGTGA	3 cut(s)	719, 905, 934
Hpy166II	GTNNAC	1 cut(s)	691
Hpy188I	TCNGA	4 cut(s)	110, 242, 457, 787
Hpy188III	TCNNGA	7 cut(s)	61, 78, 118, 179, 369, 552, 778
Hpy8I	GTNNAC	1 cut(s)	691
HpyAV	CCTTC	1 cut(s)	921
HpyCH4IV	ACGT	1 cut(s)	699
HpyCH4V	TGCA	5 cut(s)	488, 545, 719, 901, 950
HpyF10VI	GCNNNNNNNGC	3 cut(s)	308, 670, 907
HpyF3I	CTNAG	2 cut(s)	157, 454
HpySE526I	ACGT	1 cut(s)	699
Hsp92II	CATG	7 cut(s)	121, 166, 238, 345, 364, 541, 595
HspAI	GCGC	1 cut(s)	345
Kpn2I	TCCGGA	1 cut(s)	60
Kzo9I	GATC	7 cut(s)	278, 479, 502, 554, 631, 787, 903
LmnI	GCTCC	1 cut(s)	147
LweI	GCATC	4 cut(s)	193, 364, 456, 706
MaeI	CTAG	4 cut(s)	369, 665, 816, 964
MaeII	ACGT	1 cut(s)	699
MaeIII	GTNAC	4 cut(s)	213, 700, 707, 893
MalI	GATC	7 cut(s)	280, 481, 504, 556, 633, 789, 905
MboI	GATC	7 cut(s)	278, 479, 502, 554, 631, 787, 903
MboII	GAAGA	2 cut(s)	13, 432
MflI	RGATCY	4 cut(s)	278, 479, 631, 903
MluCI	AATT	6 cut(s)	173, 268, 515, 781, 887, 931
MlyI	GAGTC	1 cut(s)	162
Mph1103I	ATGCAT	1 cut(s)	952
MroI	TCCGGA	1 cut(s)	60
MseI	TTAA	2 cut(s)	192, 434
MslI	CAYNNNNRTG	1 cut(s)	359
MspI	CCGG	7 cut(s)	42, 61, 145, 615, 629, 705, 765
MspR9I	CCNGG	3 cut(s)	145, 330, 915
MvaI	CCWGG	2 cut(s)	330, 915
MvnI	CGCG	1 cut(s)	347
MwoI	GCNNNNNNNGC	3 cut(s)	308, 670, 907
NciI	CCSGG	1 cut(s)	145
NdeII	GATC	7 cut(s)	278, 479, 502, 554, 631, 787, 903
NlaIII	CATG	7 cut(s)	121, 166, 238, 345, 364, 541, 595
NlaIV	GGNNCC	4 cut(s)	149, 633, 776, 853
NmuCI	GTSAC	3 cut(s)	700, 707, 893
NsiI	ATGCAT	1 cut(s)	952
PagI	TCATGA	1 cut(s)	117
PceI	AGGCCT	1 cut(s)	866
PfoI	TCCNGGA	1 cut(s)	328
PinAI	ACCGGT	2 cut(s)	41, 704
PkrI	GCNGC	1 cut(s)	49
PleI	GAGTC	1 cut(s)	162
PpsI	GAGTC	1 cut(s)	162
Psp6I	CCWGG	2 cut(s)	328, 913
PspEI	GGTNACC	1 cut(s)	707
PspGI	CCWGG	2 cut(s)	328, 913
PspN4I	GGNNCC	4 cut(s)	149, 633, 776, 853
PspPI	GGNCC	2 cut(s)	395, 691
PsuI	RGATCY	4 cut(s)	278, 479, 631, 903
RsaI	GTAC	1 cut(s)	746
RsaNI	GTAC	1 cut(s)	745
RseI	CAYNNNNRTG	1 cut(s)	359
SaqAI	TTAA	2 cut(s)	192, 434
SatI	GCNGC	1 cut(s)	48
Sau3AI	GATC	7 cut(s)	278, 479, 502, 554, 631, 787, 903
Sau96I	GGNCC	2 cut(s)	395, 691
ScaI	AGTACT	1 cut(s)	746
SchI	GAGTC	1 cut(s)	162
ScrFI	CCNGG	3 cut(s)	145, 330, 915
SfaNI	GCATC	4 cut(s)	193, 364, 456, 706
SinI	GGWCC	2 cut(s)	395, 691
SmiMI	CAYNNNNRTG	1 cut(s)	359
Sse9I	AATT	6 cut(s)	173, 268, 515, 781, 887, 931
SseBI	AGGCCT	1 cut(s)	866
SsiI	CCGC	2 cut(s)	47, 347
SspMI	CTAG	4 cut(s)	369, 665, 816, 964
StuI	AGGCCT	1 cut(s)	866
StyD4I	CCNGG	3 cut(s)	143, 328, 913
StyI	CCWWGG	3 cut(s)	303, 312, 847
TaiI	ACGT	1 cut(s)	702
TasI	AATT	6 cut(s)	173, 268, 515, 781, 887, 931
TatI	WGTACW	1 cut(s)	744
TauI	GCSGC	1 cut(s)	50
Tru1I	TTAA	2 cut(s)	192, 434
Tru9I	TTAA	2 cut(s)	192, 434
TscAI	CASTG	2 cut(s)	625, 732
TseFI	GTSAC	3 cut(s)	700, 707, 893
Tsp45I	GTSAC	3 cut(s)	700, 707, 893
TspDTI	ATGAA	6 cut(s)	7, 198, 261, 300, 312, 330
TspRI	CASTG	2 cut(s)	625, 732
VpaK11BI	GGWCC	2 cut(s)	395, 691
XapI	RAATTY	3 cut(s)	268, 515, 781
XbaI	TCTAGA	1 cut(s)	368
XcmI	CCANNNNNNNNNTGG	2 cut(s)	310, 617
XspI	CTAG	4 cut(s)	369, 665, 816, 964
ZrmI	AGTACT	1 cut(s)	746
Zsp2I	ATGCAT	1 cut(s)	952

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.